View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8798_low_6 (Length: 340)
Name: NF8798_low_6
Description: NF8798
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8798_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 216; Significance: 1e-118; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 53 - 310
Target Start/End: Original strand, 43576604 - 43576858
Alignment:
| Q |
53 |
tatggtgtttgtagaatgtttttcttgttgcatttcctgctatagaagtgtttgcaataatcagtgagatagctgcagatttccaattgacagtgttgtt |
152 |
Q |
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| T |
43576604 |
tatggagtttgtagaatgtttttcttgttgcatttcctgctatagaagtgtttgcaataatcattgagatagc---agatttccaattgacagtgttgtt |
43576700 |
T |
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| Q |
153 |
attgaatcttgctttgatttctagcaaaccagatgctgttaaataagttgatcaaagcagatgaaataacaaccttacattgaggagaccaaggtaaatc |
252 |
Q |
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| T |
43576701 |
attgaatcttgctttgatttctagcaaaccagatgctgttaaataagttgatcaaagcagataaaataacaaccttacattgaggagaccaaggtaaatc |
43576800 |
T |
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| Q |
253 |
acaaacattccaaagctcctctatgctagagaaattcaaagatatattgagtgcaaaa |
310 |
Q |
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| T |
43576801 |
gcaaactttccaaagctcctctaggctagcgaaattcaaagatatattgagtgcaaaa |
43576858 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 172; Significance: 2e-92; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 53 - 314
Target Start/End: Original strand, 32247536 - 32247792
Alignment:
| Q |
53 |
tatggtgtttgtagaatgtttttcttgttgcatttcctgctatagaagtgtttgcaataatcagtgagatagctgcagatttccaattgacagtgttgtt |
152 |
Q |
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| T |
32247536 |
tatggagtttgtagaa-gtttttcatgttgcatttcctgctatagaagtgtttgcaataatcattgcgatagc---agatttccaattgacagttttgtt |
32247631 |
T |
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| Q |
153 |
attgaatcttgctttgatttctagcaaaccagatgctgttaaataagttgatcaaagcagatgaaataacaaccttacattgaggagaccaaggtaaatc |
252 |
Q |
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| T |
32247632 |
attaaatcttgctt-gatttctagcaaaccagatgctgttaaataagttgatcaaagcagataaaattacaaccttacattgaggagaccaaggtaaatc |
32247730 |
T |
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| Q |
253 |
acaaacattccaaagctcctctatgctagagaaattcaaagatatattgagtgcaaaagcca |
314 |
Q |
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|||||| ||||||| ||||| || |||| ||||||| |||||||||||||||||| |||||| |
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| T |
32247731 |
acaaactttccaaacctcctgtaggctatagaaatttaaagatatattgagtgcagaagcca |
32247792 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 32240160 - 32240198
Alignment:
| Q |
1 |
atatgtagctgggtgctacgcctgttcctttttactttc |
39 |
Q |
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| T |
32240160 |
atatgtagctgggtgctacgcctgttcctttttactttc |
32240198 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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