View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8798_low_7 (Length: 270)
Name: NF8798_low_7
Description: NF8798
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8798_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 56; Significance: 3e-23; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 192 - 251
Target Start/End: Original strand, 39386128 - 39386187
Alignment:
| Q |
192 |
agggaaacagaattttataatgttcaatttttaccttccaacgattttcaactgtgtccc |
251 |
Q |
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| T |
39386128 |
agggaaacagaattttataatgttcaatttttaccttccaacgattttcaaccgtgtccc |
39386187 |
T |
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Target: chr3; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 20 - 79
Target Start/End: Complemental strand, 39386187 - 39386128
Alignment:
| Q |
20 |
gggacacagttgaaaatcgttggaaggtaaaaattgaacattataaaattctgtttccct |
79 |
Q |
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| T |
39386187 |
gggacacggttgaaaatcgttggaaggtaaaaattgaacattataaaattctgtttccct |
39386128 |
T |
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