View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8798_low_8 (Length: 257)

Name: NF8798_low_8
Description: NF8798
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8798_low_8
NF8798_low_8
[»] chr8 (9 HSPs)
chr8 (1-241)||(3326433-3326673)
chr8 (7-241)||(7166117-7166351)
chr8 (38-234)||(3263985-3264181)
chr8 (13-230)||(3287916-3288133)
chr8 (38-232)||(13786062-13786256)
chr8 (45-230)||(3268687-3268872)
chr8 (24-232)||(3408779-3408987)
chr8 (39-228)||(31174276-31174465)
chr8 (141-217)||(3393060-3393136)
[»] chr3 (2 HSPs)
chr3 (31-230)||(32412424-32412623)
chr3 (24-229)||(6907312-6907517)
[»] chr2 (1 HSPs)
chr2 (125-232)||(14768377-14768484)
[»] chr7 (3 HSPs)
chr7 (39-228)||(8373193-8373382)
chr7 (19-91)||(18929209-18929281)
chr7 (19-91)||(34727445-34727517)
[»] scaffold0468 (1 HSPs)
scaffold0468 (48-96)||(7851-7899)
[»] chr6 (1 HSPs)
chr6 (178-217)||(31060326-31060365)
[»] chr4 (1 HSPs)
chr4 (48-91)||(6834397-6834440)


Alignment Details
Target: chr8 (Bit Score: 217; Significance: 1e-119; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 3326673 - 3326433
Alignment:
Q  1 tacgcgtgcttaatttagttaaggttgactatgtatgtacaatgaaggaaatggacgaaaaggaatcccttgagcttttcagttggcatgcttttagaca 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  3326673 tacgcgtgcttaatttagttaaggttgactatgtatgtacaatgaaggaaatggacgaaaaggagtcccttgagcttttcagttggcatgcttttagaca 3326574  T
Q  101 acctagtcccatacaagactactgtcaactctccaaaaaagtagttgcttatcgtggaggattaccagctgctcttgaagtccttggttcttacttatat 200  Q
    ||||||||| ||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||| |||||||||    
T  3326573 acctagtccgatacaagactactgtaaactctccaaaaaagtagttgcttattgtggaggattaccagttgctcttgaagtccttggttcatacttatat 3326474  T
Q  201 gagaggacaaaacaagaatggataagtgtactcttgaaatt 241  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  3326473 gagaggacaaaacaagaatggataagtgtactcttgaaatt 3326433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 7 - 241
Target Start/End: Complemental strand, 7166351 - 7166117
Alignment:
Q  7 tgcttaatttagttaaggttgactatgtatgtacaatgaaggaaatggacgaaaaggaatcccttgagcttttcagttggcatgcttttagacaacctag 106  Q
    |||| ||||||||||||||||||||||| |||||||||||||||||||| ||||| ||  ||||||||||||||||||||||||||||| ||||||||||    
T  7166351 tgctcaatttagttaaggttgactatgtctgtacaatgaaggaaatggaagaaaaagacccccttgagcttttcagttggcatgcttttcgacaacctag 7166252  T
Q  107 tcccatacaagactactgtcaactctccaaaaaagtagttgcttatcgtggaggattaccagctgctcttgaagtccttggttcttacttatatgagagg 206  Q
    ||| ||| || ||| | || ||||||| |  |  |||||||| ||| ||||||||||||||   |||||||||||| | |||||||||||||| | ||||    
T  7166251 tccgataaaaaacttcagtgaactctcaaggaccgtagttgcctattgtggaggattaccactggctcttgaagtcatcggttcttacttatacgggagg 7166152  T
Q  207 acaaaacaagaatggataagtgtactcttgaaatt 241  Q
    |||||||||||||||  ||||||||||||||||||    
T  7166151 acaaaacaagaatgggaaagtgtactcttgaaatt 7166117  T

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Target: chr8; HSP #3
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 38 - 234
Target Start/End: Complemental strand, 3264181 - 3263985
Alignment:
Q  38 tacaatgaaggaaatggacgaaaaggaatcccttgagcttttcagttggcatgcttttagacaacctagtcccatacaagactactgtcaactctccaaa 137  Q
    |||||||||||||||| |||||| ||| ||||||||||||||||||||||||||||| |||| ||||| ||| ||| |||||| | || ||||||| | |    
T  3264181 tacaatgaaggaaatgaacgaaagggagtcccttgagcttttcagttggcatgctttcagacgacctattccaataaaagacttcagtgaactctcaaga 3264082  T
Q  138 aaagtagttgcttatcgtggaggattaccagctgctcttgaagtccttggttcttacttatatgagaggacaaaacaagaatggataagtgtactct 234  Q
    || |||||||||||| |  |||||||||||   ||||| |||||||| |||||||| || ||||||||||||||| ||||||||  |||| ||||||    
T  3264081 aacgtagttgcttattgcagaggattaccactggctctggaagtcctaggttcttagttgtatgagaggacaaaagaagaatgggaaagtatactct 3263985  T

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Target: chr8; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 13 - 230
Target Start/End: Complemental strand, 3288133 - 3287916
Alignment:
Q  13 atttagttaaggttgactatgtatgtacaatgaaggaaatggacgaaaaggaatcccttgagcttttcagttggcatgcttttagacaacctagtcccat 112  Q
    ||||| |||||||||||||||| |||| ||||||||||||||| ||||| || ||||||||||||||||| ||||||| |||||||||||||| ||| |     
T  3288133 atttatttaaggttgactatgtgtgtaaaatgaaggaaatggatgaaaatgagtcccttgagcttttcagctggcatgtttttagacaacctaatccaag 3288034  T
Q  113 acaagactactgtcaactctccaaaaaagtagttgcttatcgtggaggattaccagctgctcttgaagtccttggttcttacttatatgagaggacaaaa 212  Q
    | |||||| | || || |||| || |  |||||| ||||| ||||||||||||||   ||||| |||||| |||||||||||| | || ||| |||| |     
T  3288033 agaagacttcagtgaattctcaaagagggtagtttcttattgtggaggattaccactagctctagaagtcattggttcttactcaaatcagatgacagat 3287934  T
Q  213 caagaatggataagtgta 230  Q
     |||| ||||||||||||    
T  3287933 gaagattggataagtgta 3287916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 38 - 232
Target Start/End: Original strand, 13786062 - 13786256
Alignment:
Q  38 tacaatgaaggaaatggacgaaaaggaatcccttgagcttttcagttggcatgcttttagacaacctagtcccatacaagactactgtcaactctccaaa 137  Q
    ||||||||||||||||| ||||    | || |||||||||||  |||||||||||||||||||||||||||| ||| |||||| | || ||||||| |      
T  13786062 tacaatgaaggaaatggtcgaaggtaagtctcttgagcttttttgttggcatgcttttagacaacctagtccaatagaagacttcagtgaactctcaagg 13786161  T
Q  138 aaagtagttgcttatcgtggaggattaccagctgctcttgaagtccttggttcttacttatatgagaggacaaaacaagaatggataagtgtact 232  Q
    |  |||||||||||| ||||||||||||||   ||||||||| || |||| |||   ||| || | ||||||||||||||||||| |||||||||    
T  13786162 agcgtagttgcttattgtggaggattaccactggctcttgaaatcattgggtctatgttacattacaggacaaaacaagaatggagaagtgtact 13786256  T

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Target: chr8; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 45 - 230
Target Start/End: Complemental strand, 3268872 - 3268687
Alignment:
Q  45 aaggaaatggacgaaaaggaatcccttgagcttttcagttggcatgcttttagacaacctagtcccatacaagactactgtcaactctccaaaaaagtag 144  Q
    ||||||||||| |||||  | ||||||||||||||| ||||||||||||||||| |||| ||||| | |  ||||| | || ||||||| | || | |||    
T  3268872 aaggaaatggatgaaaacaagtcccttgagcttttctgttggcatgcttttagagaaccaagtccgaaaggagacttcagtgaactctcaagaagaatag 3268773  T
Q  145 ttgcttatcgtggaggattaccagctgctcttgaagtccttggttcttacttatatgagaggacaaaacaagaatggataagtgta 230  Q
    ||| |||  || |||||||||||   |||||||||||| |||| ||||||||   ||| ||||||| |||||||||||||||||||    
T  3268772 ttgtttactgtagaggattaccactggctcttgaagtcattggatcttacttgcgtgacaggacaatacaagaatggataagtgta 3268687  T

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Target: chr8; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 24 - 232
Target Start/End: Complemental strand, 3408987 - 3408779
Alignment:
Q  24 gttgactatgtatgtacaatgaaggaaatggacgaaaaggaatcccttgagcttttcagttggcatgcttttagacaacctagtcccatacaagactact 123  Q
    ||||||| ||| | || |||| |||||||| |  |||| || |||||||| || |||  |||||||||||||||| || ||||||| | |  || ||       
T  3408987 gttgactctgtctataaaatggaggaaatgcagaaaaacgagtcccttgaactattctcttggcatgcttttagaaaagctagtcctagaggaggcttta 3408888  T
Q  124 gtcaactctccaaaaaagtagttgcttatcgtggaggattaccagctgctcttgaagtccttggttcttacttatatgagaggacaaaacaagaatggat 223  Q
    || ||||||| | ||| || | ||||||| ||||||| ||||||   ||||||||||||||||| || ||||||| ||||||||||||||||||||||||    
T  3408887 gtgaactctcaagaaatgtggctgcttattgtggagggttaccactggctcttgaagtccttggatcctacttatttgagaggacaaaacaagaatggat 3408788  T
Q  224 aagtgtact 232  Q
    ||| |||||    
T  3408787 aagcgtact 3408779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 39 - 228
Target Start/End: Original strand, 31174276 - 31174465
Alignment:
Q  39 acaatgaaggaaatggacgaaaaggaatcccttgagcttttcagttggcatgcttttagacaacctagtcccatacaagactactgtcaactctccaaaa 138  Q
    ||||||| |||||||||| || |  | |||||||| |||||| ||||||||||||||  |||||| | ||| | | |||  |  ||| ||||| | ||||    
T  31174276 acaatgacggaaatggacaaataccagtcccttgaacttttctgttggcatgcttttcaacaaccaaatcctagagaaggtttttgtgaactcactaaaa 31174375  T
Q  139 aagtagttgcttatcgtggaggattaccagctgctcttgaagtccttggttcttacttatatgagaggacaaaacaagaatggataagtg 228  Q
    |||| ||||||||| | ||||||||||||   |||||||||||||||||   ||||||||    ||||| ||||| |||||||| |||||    
T  31174376 aagtggttgcttattgcggaggattaccattggctcttgaagtccttggaagttacttatcaatgaggaaaaaactagaatggaaaagtg 31174465  T

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Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 141 - 217
Target Start/End: Complemental strand, 3393136 - 3393060
Alignment:
Q  141 gtagttgcttatcgtggaggattaccagctgctcttgaagtccttggttcttacttatatgagaggacaaaacaaga 217  Q
    |||||||| ||| |||| ||| |||||   ||||||||||||||||| ||||||||||   |||||| |||||||||    
T  3393136 gtagttgcctattgtggtggaataccactagctcttgaagtccttggatcttacttattgaagaggagaaaacaaga 3393060  T

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Target: chr3 (Bit Score: 64; Significance: 4e-28; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 31 - 230
Target Start/End: Complemental strand, 32412623 - 32412424
Alignment:
Q  31 atgtatgtacaatgaaggaaatggacgaaaaggaatcccttgagcttttcagttggcatgcttttagacaacctagtcccatacaagactactgtcaact 130  Q
    |||| |||||||||||||| ||||| ||| | || |||||||| |||||||||||||||||||||||| |||| ||||| | | || |||    | ||||    
T  32412623 atgtttgtacaatgaaggagatggatgaagatgagtcccttgaacttttcagttggcatgcttttagagaaccaagtccaacaaaatactttactgaact 32412524  T
Q  131 ctccaaaaaagtagttgcttatcgtggaggattaccagctgctcttgaagtccttggttcttacttatatgagaggacaaaacaagaatggataagtgta 230  Q
    ||| | ||| || ||||||||  |||||||||| |||  |||||||||| ||||||| |||||||||||||  |||||||||  |||||||| |||||||    
T  32412523 ctctagaaatgttgttgcttactgtggaggattgccacttgctcttgaaatccttggatcttacttatatggaaggacaaaaagagaatggacaagtgta 32412424  T

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Target: chr3; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 24 - 229
Target Start/End: Complemental strand, 6907517 - 6907312
Alignment:
Q  24 gttgactatgtatgtacaatgaaggaaatggacgaaaaggaatcccttgagcttttcagttggcatgcttttagacaacctagtcccatacaagactact 123  Q
    ||||||| ||| ||||||  ||| |||||||| ||||| || ||||||||||||||||||||||||||||||||| |  | | ||| | |  | ||| |     
T  6907517 gttgactgtgtctgtacagcgaaagaaatggatgaaaatgagtcccttgagcttttcagttggcatgcttttagaaacgcaactccaagagcaaacttca 6907418  T
Q  124 gtcaactctccaaaaaagtagttgcttatcgtggaggattaccagctgctcttgaagtccttggttcttacttatatgagaggacaaaacaagaatggat 223  Q
    || | ||||| ||||| ||||||  |||  |||||||||||||    ||| |||||||||| || |||||||||| ||| ||||||||| |||||||||     
T  6907417 gtgatctctcaaaaaatgtagttaattactgtggaggattacccttggctgttgaagtcctcggatcttacttatttgaaaggacaaaagaagaatggaa 6907318  T
Q  224 aagtgt 229  Q
    ||||||    
T  6907317 aagtgt 6907312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 125 - 232
Target Start/End: Complemental strand, 14768484 - 14768377
Alignment:
Q  125 tcaactctccaaaaaagtagttgcttatcgtggaggattaccagctgctcttgaagtccttggttcttacttatatgagaggacaaaacaagaatggata 224  Q
    ||||||||| ||||| |||||||||||| |||||||||| |||   |||||||||||| |||| ||||||||||||| ||||||||||| |||||||  |    
T  14768484 tcaactctcaaaaaaggtagttgcttattgtggaggattgccattggctcttgaagtcattggatcttacttatatgggaggacaaaaccagaatgggaa 14768385  T
Q  225 agtgtact 232  Q
    ||||||||    
T  14768384 agtgtact 14768377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 46; Significance: 2e-17; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 39 - 228
Target Start/End: Complemental strand, 8373382 - 8373193
Alignment:
Q  39 acaatgaaggaaatggacgaaaaggaatcccttgagcttttcagttggcatgcttttagacaacctagtcccatacaagactactgtcaactctccaaaa 138  Q
    |||||||  ||||||||  |||| || |||||||| |||||||| |||||||||||| ||||| |  |||| | | |||| | | || ||||||| | ||    
T  8373382 acaatgattgaaatggataaaaacgagtcccttgaacttttcagctggcatgcttttcgacaatcatgtcctagaaaagatttcggtaaactctctagaa 8373283  T
Q  139 aagtagttgcttatcgtggaggattaccagctgctcttgaagtccttggttcttacttatatgagaggacaaaacaagaatggataagtg 228  Q
    | || ||| ||||| |   ||||||||||   ||||||||||||||||| |||||||||| | |||||||| |||||||||||| |||||    
T  8373282 atgtggtttcttattgcaaaggattaccactagctcttgaagtccttggatcttacttatctaagaggacagaacaagaatggagaagtg 8373193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 91
Target Start/End: Original strand, 18929209 - 18929281
Alignment:
Q  19 ttaaggttgactatgtatgtacaatgaaggaaatggacgaaaaggaatcccttgagcttttcagttggcatgc 91  Q
    |||| ||| ||||||| | || |||||| ||||||||||| || ||||| ||||||||||| |||||||||||    
T  18929209 ttaaagttcactatgtgtatagaatgaaagaaatggacgacaatgaatctcttgagctttttagttggcatgc 18929281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 91
Target Start/End: Complemental strand, 34727517 - 34727445
Alignment:
Q  19 ttaaggttgactatgtatgtacaatgaaggaaatggacgaaaaggaatcccttgagcttttcagttggcatgc 91  Q
    |||| ||||||||||| | || |||||| |||||||| |  || ||||| ||||||||||| |||||||||||    
T  34727517 ttaaagttgactatgtgtatagaatgaaagaaatggatggcaatgaatctcttgagctttttagttggcatgc 34727445  T

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Target: scaffold0468 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0468
Description:

Target: scaffold0468; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 48 - 96
Target Start/End: Complemental strand, 7899 - 7851
Alignment:
Q  48 gaaatggacgaaaaggaatcccttgagcttttcagttggcatgctttta 96  Q
    |||||||||||| | || |||||||||||||||||||||||||||||||    
T  7899 gaaatggacgaagatgagtcccttgagcttttcagttggcatgctttta 7851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 178 - 217
Target Start/End: Complemental strand, 31060365 - 31060326
Alignment:
Q  178 aagtccttggttcttacttatatgagaggacaaaacaaga 217  Q
    |||||||||||| |||||||| ||||||||||||||||||    
T  31060365 aagtccttggttgttacttatctgagaggacaaaacaaga 31060326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 48 - 91
Target Start/End: Original strand, 6834397 - 6834440
Alignment:
Q  48 gaaatggacgaaaaggaatcccttgagcttttcagttggcatgc 91  Q
    |||||||||||||  ||||| |||||||||||||||||||||||    
T  6834397 gaaatggacgaaagtgaatctcttgagcttttcagttggcatgc 6834440  T

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