View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8798_low_9 (Length: 227)
Name: NF8798_low_9
Description: NF8798
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8798_low_9 |
 | |
|
| [»] chr8 (1 HSPs) |
| |
|
| [»] chr6 (24 HSPs) |
| |
|
| [»] scaffold0349 (1 HSPs) |
| | |
|
| [»] scaffold1870 (1 HSPs) |
| | |
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| [»] scaffold0277 (2 HSPs) |
| | |
|
| [»] scaffold0419 (1 HSPs) |
| | |
|
| [»] scaffold0003 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 29272406 - 29272180
Alignment:
| Q |
1 |
aagagcctggagaaagaagtaggttatgctgccaggatgatatagttcgtgttttaagagaaaacactgtgagtaagattgatatatatgatcattttgt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
29272406 |
aagagcctggagaaagaagtaggttatgctgccaggatgatctagttcgtgttttaagagaaaacactgtgagtaagattgatatctatgatcattttgt |
29272307 |
T |
|
| Q |
101 |
tatttagttttaatacgactttgctctttttggactaaatattatcatctgatactagcatttcttttcactcaattgcatgttaatatttgtacatctt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
29272306 |
tatttagttttaatacgactttgctctttttggactaaatattatcatctgatactagcatttattttcactcaattgcatgttaatatttgtacatctt |
29272207 |
T |
|
| Q |
201 |
atttttattgtggttgattcatgtttt |
227 |
Q |
| |
|
|||||||||||||||||||||| |||| |
|
|
| T |
29272206 |
atttttattgtggttgattcatatttt |
29272180 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 191; Significance: 1e-104; HSPs: 24)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 27609688 - 27609462
Alignment:
| Q |
1 |
aagagcctggagaaagaagtaggttatgctgccaggatgatatagttcgtgttttaagagaaaacactgtgagtaagattgatatatatgatcattttgt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
27609688 |
aagagcctggagaaagaagtaggttatgctgtcaggatgatatagttcgtgttttaagagaaaacactgtgagtaagattgatatctatgatcattttgt |
27609589 |
T |
|
| Q |
101 |
tatttagttttaatacgactttgctctttttggactaaatattatcatctgatactagcatttcttttcactcaattgcatgttaatatttgtacatctt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||| ||||||||||| | || |||| |
|
|
| T |
27609588 |
tatttagttttaatacgactttgctctttttgcactaaatatgatcatctgatactagcatttcttttcactcaattacatgttaatatatctatgtctt |
27609489 |
T |
|
| Q |
201 |
atttttattgtggttgattcatgtttt |
227 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
27609488 |
atttttattgtggttgattcatgtttt |
27609462 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 27697157 - 27696931
Alignment:
| Q |
1 |
aagagcctggagaaagaagtaggttatgctgccaggatgatatagttcgtgttttaagagaaaacactgtgagtaagattgatatatatgatcattttgt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||| ||| ||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
27697157 |
aagagcctggagaaagaagtaggttatgctgtcaggatgatataactcgggttttaagagaaaacactgtgagtaagattgatatctatgatcattttgt |
27697058 |
T |
|
| Q |
101 |
tatttagttttaatacgactttgctctttttggactaaatattatcatctgatactagcatttcttttcactcaattgcatgttaatatttgtacatctt |
200 |
Q |
| |
|
||||||||||||||||||||||||||| |||| ||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||| || ||||| |
|
|
| T |
27697057 |
tatttagttttaatacgactttgctctatttgcactaaatatgatcatctgatactagcatttcttttcactcaattacatgttaatatttctatatctt |
27696958 |
T |
|
| Q |
201 |
atttttattgtggttgattcatgtttt |
227 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
27696957 |
atttttattgtggttgattcatgtttt |
27696931 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 27717067 - 27716841
Alignment:
| Q |
1 |
aagagcctggagaaagaagtaggttatgctgccaggatgatatagttcgtgttttaagagaaaacactgtgagtaagattgatatatatgatcattttgt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
27717067 |
aagagcctggagaaagaagtaggttatgctgtcaggatgatatagttcgtgttttaagagaaaacactgtgagtaagattgatatctatgatcattttgt |
27716968 |
T |
|
| Q |
101 |
tatttagttttaatacgactttgctctttttggactaaatattatcatctgatactagcatttcttttcactcaattgcatgttaatatttgtacatctt |
200 |
Q |
| |
|
|||||||||||||||| ||||||||||||||| ||||||||| ||||||| | || ||||||||||||||||||||| ||||||||||||| || ||||| |
|
|
| T |
27716967 |
tatttagttttaatacaactttgctctttttgaactaaatatgatcatctaaaacgagcatttcttttcactcaattacatgttaatatttctatatctt |
27716868 |
T |
|
| Q |
201 |
atttttattgtggttgattcatgtttt |
227 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
27716867 |
atttttattgtggttgattcatgtttt |
27716841 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 27680576 - 27680802
Alignment:
| Q |
1 |
aagagcctggagaaagaagtaggttatgctgccaggatgatatagttcgtgttttaagagaaaacactgtgagtaagattgatatatatgatcattttgt |
100 |
Q |
| |
|
|||||||||||||| ||||||||||||| | || || |||||| ||| |||||||| ||||||||||||||||| ||||||||| |||||||||||||| |
|
|
| T |
27680576 |
aagagcctggagaacgaagtaggttatggcgtcaagaagatataattcatgttttaaaagaaaacactgtgagtatgattgatatctatgatcattttgt |
27680675 |
T |
|
| Q |
101 |
tatttagttttaatacgactttgctctttttggactaaatattatcatctgatactagcatttcttttcactcaattgcatgttaatatttgtacatctt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||| ||||||||||| | || |||| |
|
|
| T |
27680676 |
tatttagttttaatacgactttgctctttttgcactaaatatgatcatctgatactagcatttcttttcactcaattacatgttaatatatctatgtctt |
27680775 |
T |
|
| Q |
201 |
atttttattgtggttgattcatgtttt |
227 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
27680776 |
atttttattgtggttgattcatgtttt |
27680802 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 1 - 163
Target Start/End: Complemental strand, 27704831 - 27704669
Alignment:
| Q |
1 |
aagagcctggagaaagaagtaggttatgctgccaggatgatatagttcgtgttttaagagaaaacactgtgagtaagattgatatatatgatcattttgt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||| ||| |||| ||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
27704831 |
aagagcctggagaaagaagtaggttatgctgccatgatgatatagttaatgtcttaaaagaaaacactgtgagtaagattgatatctatgatcattttgt |
27704732 |
T |
|
| Q |
101 |
tatttagttttaatacgactttgctctttttggactaaatattatcatctgatactagcattt |
163 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||| | ||||| ||||||| |||| |
|
|
| T |
27704731 |
tatttagttttaatatgactttgctctttttggactaaatatgaccatctcatactagtattt |
27704669 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 1 - 169
Target Start/End: Original strand, 28787867 - 28788035
Alignment:
| Q |
1 |
aagagcctggagaaagaagtaggttatgctgccaggatgatatagttcgtgttttaagagaaaacactgtgagtaagattgatatatatgatcattttgt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||| || || |||||||||||| |||||||| ||||||||| ||||||| ||||||||| |||| ||| ||||| |
|
|
| T |
28787867 |
aagagcctggagaaagaagtaggttatggtgtcaagatgatatagttaatgttttaaaagaaaacaccgtgagtatgattgatatttatgttcaatttgt |
28787966 |
T |
|
| Q |
101 |
tatttagttttaatacgactttgctctttttggactaaatattatcatctgatactagcatttcttttc |
169 |
Q |
| |
|
|||||| |||| |||||||||||||||||||||||||||||| | ||||| ||||||| |||| ||||| |
|
|
| T |
28787967 |
tatttaattttgatacgactttgctctttttggactaaatatgaccatctcatactagtatttgttttc |
28788035 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 1 - 169
Target Start/End: Original strand, 28793988 - 28794156
Alignment:
| Q |
1 |
aagagcctggagaaagaagtaggttatgctgccaggatgatatagttcgtgttttaagagaaaacactgtgagtaagattgatatatatgatcattttgt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||| || || |||||||||||| |||||||| ||||||||| ||||||| ||||||||| |||| ||| ||||| |
|
|
| T |
28793988 |
aagagcctggagaaagaagtaggttatggtgtcaagatgatatagttaatgttttaaaagaaaacaccgtgagtatgattgatatttatgttcaatttgt |
28794087 |
T |
|
| Q |
101 |
tatttagttttaatacgactttgctctttttggactaaatattatcatctgatactagcatttcttttc |
169 |
Q |
| |
|
|||||| |||| |||||||||||||||||||||||||||||| | ||||| ||||||| |||| ||||| |
|
|
| T |
28794088 |
tatttaattttgatacgactttgctctttttggactaaatatgaccatctcatactagtatttgttttc |
28794156 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 1 - 183
Target Start/End: Complemental strand, 27603263 - 27603080
Alignment:
| Q |
1 |
aagagcctggagaaagaagtaggttatgctgccaggatgatatagttcgtgttttaagagaaaacactgtgagtaagattgatatatatgatcattttgt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||| || || || |||||||||| |||| ||| |||||||||||||||||||||||||||||| |||| ||||| |
|
|
| T |
27603263 |
aagagcctggagaaagaagtaggttatggtgtcaagacgatatagttcatgttctaacagaaaacactgtgagtaagattgatatataatatcaatttgt |
27603164 |
T |
|
| Q |
101 |
tatttagttttaatacgac-tttgctctttttggactaaatattatcatctgatactagcatttcttttcactcaattgcatgt |
183 |
Q |
| |
|
||||||||||||||| ||| |||| |||||||||||||||||| ||||||| |||||| |||| ||| |||| |||| ||||| |
|
|
| T |
27603163 |
tatttagttttaatatgacttttggtctttttggactaaatatgatcatctcatactattatttttttccacttaattacatgt |
27603080 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 1 - 183
Target Start/End: Complemental strand, 27591583 - 27591401
Alignment:
| Q |
1 |
aagagcctggagaaagaagtaggttatgctgccaggatgatatagttcgtgttttaagagaaaacactgtgagtaagattgatatatatgatcattttgt |
100 |
Q |
| |
|
||||||||||||||||||| |||||||| | || ||||||||||||| |||||||| ||||||||||||| ||||||||||||| |||| ||| ||||| |
|
|
| T |
27591583 |
aagagcctggagaaagaagcaggttatggtctcaagatgatatagttcatgttttaaaagaaaacactgtgcgtaagattgatatctatgttcaatttgt |
27591484 |
T |
|
| Q |
101 |
tatttagttttaatacgactttgctctttttggactaaatattatcatctgatactagcatttcttttcactcaattgcatgt |
183 |
Q |
| |
|
|||||||||||||||| ||||||||| ||||||||||||||| | ||||| ||||||| || | ||| |||| |||| ||||| |
|
|
| T |
27591483 |
tatttagttttaatacaactttgctcattttggactaaatatgaccatctcatactagtatatttttccacttaattacatgt |
27591401 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 1 - 168
Target Start/End: Complemental strand, 27676182 - 27676015
Alignment:
| Q |
1 |
aagagcctggagaaagaagtaggttatgctgccaggatgatatagttcgtgttttaagagaaaacactgtgagtaagattgatatatatgatcattttgt |
100 |
Q |
| |
|
||||||||||||||||||| |||||||| | || ||||||||||||| |||||||| ||||||||||||||||||||||||||| |||| ||| ||||| |
|
|
| T |
27676182 |
aagagcctggagaaagaagcaggttatggtctcaagatgatatagttcatgttttaacagaaaacactgtgagtaagattgatatctatgttcaatttgt |
27676083 |
T |
|
| Q |
101 |
tatttagttttaatacgactttgctctttttggactaaatattatcatctgatactagcatttctttt |
168 |
Q |
| |
|
|||||||||||||||| | ||||||| ||||||||||||||| | ||||| ||| ||| |||| |||| |
|
|
| T |
27676082 |
tatttagttttaatacaattttgctcattttggactaaatatgaccatctcatattagtatttttttt |
27676015 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 1 - 134
Target Start/End: Original strand, 26624876 - 26625009
Alignment:
| Q |
1 |
aagagcctggagaaagaagtaggttatgctgccaggatgatatagttcgtgttttaagagaaaacactgtgagtaagattgatatatatgatcattttgt |
100 |
Q |
| |
|
|||||||||||||| ||||||| ||||| || || ||||||||| ||| |||||||| |||||||| |||||||||||||||||| |||||||| ||| | |
|
|
| T |
26624876 |
aagagcctggagaacgaagtagattatggtgtcaagatgatatatttcatgttttaaaagaaaacagtgtgagtaagattgatatctatgatcaatttat |
26624975 |
T |
|
| Q |
101 |
tatttagttttaatacgactttgctctttttgga |
134 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||| |
|
|
| T |
26624976 |
tatttagttttaatactactttgctctttttgga |
26625009 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 1 - 126
Target Start/End: Original strand, 26648084 - 26648209
Alignment:
| Q |
1 |
aagagcctggagaaagaagtaggttatgctgccaggatgatatagttcgtgttttaagagaaaacactgtgagtaagattgatatatatgatcattttgt |
100 |
Q |
| |
|
|||||||||||||| |||||||||||| || || ||||| ||||||| |||||||| |||||||||||||||||||||| |||| |||||||| ||||| |
|
|
| T |
26648084 |
aagagcctggagaacaaagtaggttatggtgtcaagatgaaatagttcatgttttaaaagaaaacactgtgagtaagattaatatctatgatcaatttgt |
26648183 |
T |
|
| Q |
101 |
tatttagttttaatacgactttgctc |
126 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
26648184 |
tatttagttttaatacgactttgctc |
26648209 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 1 - 134
Target Start/End: Original strand, 26730853 - 26730986
Alignment:
| Q |
1 |
aagagcctggagaaagaagtaggttatgctgccaggatgatatagttcgtgttttaagagaaaacactgtgagtaagattgatatatatgatcattttgt |
100 |
Q |
| |
|
|||||||||||||| ||||||| ||||| || || ||||||||| ||| |||||||| |||||||| |||||||||||||||||| |||||||| ||| | |
|
|
| T |
26730853 |
aagagcctggagaacgaagtagattatggtgtcaagatgatatatttcatgttttaaaagaaaacagtgtgagtaagattgatatctatgatcaatttat |
26730952 |
T |
|
| Q |
101 |
tatttagttttaatacgactttgctctttttgga |
134 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||| |
|
|
| T |
26730953 |
tatttagttttaatactactttgctctttttgga |
26730986 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #14
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 1 - 126
Target Start/End: Original strand, 26754052 - 26754177
Alignment:
| Q |
1 |
aagagcctggagaaagaagtaggttatgctgccaggatgatatagttcgtgttttaagagaaaacactgtgagtaagattgatatatatgatcattttgt |
100 |
Q |
| |
|
|||||||||||||| |||||||||||| || || ||||| ||||||| |||||||| |||||||||||||||||||||| |||| |||||||| ||||| |
|
|
| T |
26754052 |
aagagcctggagaacaaagtaggttatggtgtcaagatgaaatagttcatgttttaaaagaaaacactgtgagtaagattaatatctatgatcaatttgt |
26754151 |
T |
|
| Q |
101 |
tatttagttttaatacgactttgctc |
126 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
26754152 |
tatttagttttaatacgactttgctc |
26754177 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #15
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 31286170 - 31286385
Alignment:
| Q |
1 |
aagagcctggagaaagaagtaggttatgctgccaggatgatatagttcgtgttttaagagaaaacactgtgagtaagattgatatatatgatcattttgt |
100 |
Q |
| |
|
||||||| ||||||||||||||| |||| || || ||||||||||||| || ||||| |||||||||||||||||||||||||| |||| ||| ||||| |
|
|
| T |
31286170 |
aagagccaggagaaagaagtaggctatggtgtcaagatgatatagttcatgctttaaatgaaaacactgtgagtaagattgatatctatgttcaatttgt |
31286269 |
T |
|
| Q |
101 |
tatttagttttaatacgactttgctctttttggactaaatattatcatctgatactagcatttcttttcactcaattgcatgttaatatttgtacatctt |
200 |
Q |
| |
|
||||||||||||| |||||||||||||||| ||| | ||||| ||||||| |||| |||| ||| |||| ||||| ||| | | | ||||| |
|
|
| T |
31286270 |
tatttagttttaaaacgactttgctctttt---------tatgaccatctcatactagtatttatttttacttaattacatgtaaatttctccatatctt |
31286360 |
T |
|
| Q |
201 |
atttttattgtggttgattcatgtt |
225 |
Q |
| |
|
||||||||||||||||||| ||||| |
|
|
| T |
31286361 |
atttttattgtggttgatttatgtt |
31286385 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #16
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 16 - 219
Target Start/End: Original strand, 26804087 - 26804291
Alignment:
| Q |
16 |
gaagtaggttatgctgccaggatgatatagttcgtgttttaagagaaaacactgtgagtaagattgatatatatgatcattttgttatttagttttaata |
115 |
Q |
| |
|
||||||||||||| | || || |||||||||| |||| ||| |||||||| |||||||||||||||||| |||| ||| ||||||||||||||| ||| |
|
|
| T |
26804087 |
gaagtaggttatggcgtcatgaagatatagttcatgttataaaagaaaacattgtgagtaagattgatatttatgttcaatttgttatttagtttagata |
26804186 |
T |
|
| Q |
116 |
cgactttgctctttttggactaaatattatcatctgatactagca-tttcttttcactcaattgcatgttaatatttgtacatcttatttttattgtggt |
214 |
Q |
| |
|
||||||||| |||| |||||| |||| | ||||| ||||||| | ||| |||||||| |||| ||| | ||| | | || |||||||| |||||||| | |
|
|
| T |
26804187 |
cgactttgcatttttaggactacatatgaccatctcatactagtatttttttttcacttaattacatataaatttctctatatcttattgttattgtgat |
26804286 |
T |
|
| Q |
215 |
tgatt |
219 |
Q |
| |
|
||||| |
|
|
| T |
26804287 |
tgatt |
26804291 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #17
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 9 - 85
Target Start/End: Original strand, 26813171 - 26813247
Alignment:
| Q |
9 |
ggagaaagaagtaggttatgctgccaggatgatatagttcgtgttttaagagaaaacactgtgagtaagattgatat |
85 |
Q |
| |
|
|||||| |||||||| |||| || || ||||||||||||| |||||||| |||||||| |||||||||||||||||| |
|
|
| T |
26813171 |
ggagaacgaagtaggctatggtgtcaagatgatatagttcatgttttaaaagaaaacattgtgagtaagattgatat |
26813247 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #18
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 136
Target Start/End: Original strand, 26863185 - 26863320
Alignment:
| Q |
1 |
aagagcctggagaaagaagtaggttatgctgccaggatgatatagttcgtgttttaagagaaaacactgtgagtaagattgatatatatgatcattttgt |
100 |
Q |
| |
|
||||||| || ||| ||||||||||||| || || ||||||||| | | |||||| ||||||||||||||||||||||||||| ||||| || | ||| |
|
|
| T |
26863185 |
aagagccgggtgaacgaagtaggttatggtgtcatgatgatataatccacgttttagaagaaaacactgtgagtaagattgatatttatgaacaatctgt |
26863284 |
T |
|
| Q |
101 |
tatttagt-tttaatacgactttgctctttttggact |
136 |
Q |
| |
|
|| ||||| ||||| || ||||||||| |||| |||| |
|
|
| T |
26863285 |
ta-ttagtctttaacacaactttgctcgttttagact |
26863320 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #19
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 59 - 134
Target Start/End: Complemental strand, 27426125 - 27426049
Alignment:
| Q |
59 |
agaaaacactgtgagtaagattgatatatatgatcattttgttatttag-ttttaatacgactttgctctttttgga |
134 |
Q |
| |
|
||||||||||||||||||||||||||| | || || |||||||||||| |||||| | |||||||||||||||||| |
|
|
| T |
27426125 |
agaaaacactgtgagtaagattgatatgcaggaacaatttgttatttagcttttaacatgactttgctctttttgga |
27426049 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #20
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 38 - 132
Target Start/End: Complemental strand, 27529838 - 27529741
Alignment:
| Q |
38 |
tgatatagttcgtgttttaagagaaaacactgtgagtaagattgatatatatgatcattttgtt--atttag-ttttaatacgactttgctctttttg |
132 |
Q |
| |
|
||||||||||| |||||||| | ||||||||||||||||||||||||| || || || |||||| |||||| |||||| | ||| |||||||||||| |
|
|
| T |
27529838 |
tgatatagttcatgttttaaaaaaaaacactgtgagtaagattgatatctaggaacaatttgttaaatttagcttttaacatgacattgctctttttg |
27529741 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #21
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 6 - 91
Target Start/End: Complemental strand, 25491870 - 25491785
Alignment:
| Q |
6 |
cctggagaaagaagtaggttatgctgccaggatgatatagttcgtgttttaagagaaaacactgtgagtaagattgatatatatga |
91 |
Q |
| |
|
||||||||| | |||||||| || || | |||||||| |||| ||||||||||||||||| || |||||||||||||| ||||| |
|
|
| T |
25491870 |
cctggagaacgtagtaggttgtggtgtcccgatgatatggttcaagttttaagagaaaacacggtaagtaagattgatatctatga |
25491785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 196 - 227
Target Start/End: Original strand, 26625031 - 26625062
Alignment:
| Q |
196 |
atcttatttttattgtggttgattcatgtttt |
227 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
26625031 |
atcttatttttattgtggttgattcatgtttt |
26625062 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #23
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 196 - 227
Target Start/End: Original strand, 26731008 - 26731039
Alignment:
| Q |
196 |
atcttatttttattgtggttgattcatgtttt |
227 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
26731008 |
atcttatttttattgtggttgattcatgtttt |
26731039 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #24
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 26885696 - 26885751
Alignment:
| Q |
1 |
aagagcctggagaaagaagtaggttatgctgccaggatgatatagttcgtgtttta |
56 |
Q |
| |
|
|||||||||||||| | ||||||||||| || || ||||||||||||| ||||||| |
|
|
| T |
26885696 |
aagagcctggagaacgtagtaggttatggtgtcacgatgatatagttcatgtttta |
26885751 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0349 (Bit Score: 123; Significance: 2e-63; HSPs: 1)
Name: scaffold0349
Description:
Target: scaffold0349; HSP #1
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 1 - 150
Target Start/End: Complemental strand, 2107 - 1957
Alignment:
| Q |
1 |
aagagcctggagaaagaagtaggttatgctgccaggatgatatagttcgtgttttaagagaaaacactgtgagtaagattgatatatatgatcattttgt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
2107 |
aagagcctggagaaagaagtaggttatgctgtcaggatgatatagttcgtgttttaagagaaaacactgtgagtaagattgatatctatgatcattttgt |
2008 |
T |
|
| Q |
101 |
tatttagttttaatacgactttgctctttttg-gactaaatattatcatct |
150 |
Q |
| |
|
|||||||||||||||| ||||||||||||||| ||||||||| ||||||| |
|
|
| T |
2007 |
tatttagttttaatacaactttgctctttttgtaactaaatatgatcatct |
1957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1870 (Bit Score: 101; Significance: 3e-50; HSPs: 1)
Name: scaffold1870
Description:
Target: scaffold1870; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 1 - 169
Target Start/End: Original strand, 395 - 563
Alignment:
| Q |
1 |
aagagcctggagaaagaagtaggttatgctgccaggatgatatagttcgtgttttaagagaaaacactgtgagtaagattgatatatatgatcattttgt |
100 |
Q |
| |
|
||||||| |||||||||||||||||||| || || |||||||||||| |||||||| ||||||||||||||||||||||||||| |||| ||| ||||| |
|
|
| T |
395 |
aagagccaggagaaagaagtaggttatggtgtcaagatgatatagttaatgttttaaaagaaaacactgtgagtaagattgatatctatgttcaatttgt |
494 |
T |
|
| Q |
101 |
tatttagttttaatacgactttgctctttttggactaaatattatcatctgatactagcatttcttttc |
169 |
Q |
| |
|
||||||||||| ||| |||||||||||||||||||||||||| | ||||| ||||||| |||| ||||| |
|
|
| T |
495 |
tatttagttttgatatgactttgctctttttggactaaatatgaccatctcatactagtattttttttc |
563 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 99; Significance: 5e-49; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 1 - 163
Target Start/End: Complemental strand, 266917 - 266755
Alignment:
| Q |
1 |
aagagcctggagaaagaagtaggttatgctgccaggatgatatagttcgtgttttaagagaaaacactgtgagtaagattgatatatatgatcattttgt |
100 |
Q |
| |
|
|||||||||||||| ||||||||||||| || || ||||||||||||| |||||||| ||||||||||||||||||||||||| ||||||| ||||| |
|
|
| T |
266917 |
aagagcctggagaacgaagtaggttatggtgtcaagatgatatagttcatgttttaaataaaaacactgtgagtaagattgatatcaatgatcaatttgt |
266818 |
T |
|
| Q |
101 |
tatttagttttaatacgactttgctctttttggactaaatattatcatctgatactagcattt |
163 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||| | ||||| ||||||| |||| |
|
|
| T |
266817 |
tatttagttttaatacgactttgctctttttggacaaaatatgaccatctcatactagtattt |
266755 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0277 (Bit Score: 97; Significance: 8e-48; HSPs: 2)
Name: scaffold0277
Description:
Target: scaffold0277; HSP #1
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 1 - 169
Target Start/End: Complemental strand, 3271 - 3103
Alignment:
| Q |
1 |
aagagcctggagaaagaagtaggttatgctgccaggatgatatagttcgtgttttaagagaaaacactgtgagtaagattgatatatatgatcattttgt |
100 |
Q |
| |
|
|||||||||||||||||||||| ||||| || | |||||||||||| |||||||| ||||||||||||||||||||||||||| |||| ||| ||||| |
|
|
| T |
3271 |
aagagcctggagaaagaagtagattatggtgtgaagatgatatagttaatgttttaaaagaaaacactgtgagtaagattgatatctatgttcaatttgt |
3172 |
T |
|
| Q |
101 |
tatttagttttaatacgactttgctctttttggactaaatattatcatctgatactagcatttcttttc |
169 |
Q |
| |
|
||||||||||| ||| |||||||||||||||||||||||||| | ||||| ||||||| |||| ||||| |
|
|
| T |
3171 |
tatttagttttgatatgactttgctctttttggactaaatatgaccatctcatactagtattttttttc |
3103 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0277; HSP #2
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 1 - 169
Target Start/End: Complemental strand, 12234 - 12066
Alignment:
| Q |
1 |
aagagcctggagaaagaagtaggttatgctgccaggatgatatagttcgtgttttaagagaaaacactgtgagtaagattgatatatatgatcattttgt |
100 |
Q |
| |
|
|||||||||||||||||||||| ||||| || | |||||||||||| |||||||| ||||||||||||||||||||||||||| |||| ||| ||||| |
|
|
| T |
12234 |
aagagcctggagaaagaagtagattatggtgtgaagatgatatagttaatgttttaaaagaaaacactgtgagtaagattgatatctatgttcaatttgt |
12135 |
T |
|
| Q |
101 |
tatttagttttaatacgactttgctctttttggactaaatattatcatctgatactagcatttcttttc |
169 |
Q |
| |
|
||||||||||| ||| |||||||||||||||||||||||||| | ||||| ||||||| |||| ||||| |
|
|
| T |
12134 |
tatttagttttgatatgactttgctctttttggactaaatatgaccatctcatactagtattttttttc |
12066 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0419 (Bit Score: 96; Significance: 3e-47; HSPs: 1)
Name: scaffold0419
Description:
Target: scaffold0419; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 1 - 168
Target Start/End: Original strand, 9113 - 9280
Alignment:
| Q |
1 |
aagagcctggagaaagaagtaggttatgctgccaggatgatatagttcgtgttttaagagaaaacactgtgagtaagattgatatatatgatcattttgt |
100 |
Q |
| |
|
||||||| |||||||||||||||||||| || || |||||||||||| |||||||| ||||||||||||||||||||||||||| |||| ||| ||||| |
|
|
| T |
9113 |
aagagccaggagaaagaagtaggttatggtgtcaagatgatatagttaatgttttaaaagaaaacactgtgagtaagattgatatctatgttcaatttgt |
9212 |
T |
|
| Q |
101 |
tatttagttttaatacgactttgctctttttggactaaatattatcatctgatactagcatttctttt |
168 |
Q |
| |
|
||||||||||| ||| |||||||||||||||||||||||||| | ||||| ||| ||| |||| |||| |
|
|
| T |
9213 |
tatttagttttgatatgactttgctctttttggactaaatatgaccatctcatattagtatttttttt |
9280 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 59 - 134
Target Start/End: Original strand, 61238 - 61314
Alignment:
| Q |
59 |
agaaaacactgtgagtaagattgatatatatgatcattttgttatttag-ttttaatacgactttgctctttttgga |
134 |
Q |
| |
|
||||||||||||||||||||||||||| | || || |||||||||||| |||||| | |||||||||||||||||| |
|
|
| T |
61238 |
agaaaacactgtgagtaagattgatatgcaggaacaatttgttatttagcttttaacatgactttgctctttttgga |
61314 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 59 - 134
Target Start/End: Original strand, 18075430 - 18075506
Alignment:
| Q |
59 |
agaaaacactgtgagtaagattgatatatatgatcattttgttatttag-ttttaatacgactttgctctttttgga |
134 |
Q |
| |
|
||||||||||||||||||||||||||| | || || |||||||||||| |||||| | |||||||||||||||||| |
|
|
| T |
18075430 |
agaaaacactgtgagtaagattgatatgcaggaacaatttgttatttagcttttaacatgactttgctctttttgga |
18075506 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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