View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8799_low_1 (Length: 421)
Name: NF8799_low_1
Description: NF8799
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8799_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 180; Significance: 5e-97; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 180; E-Value: 5e-97
Query Start/End: Original strand, 20 - 228
Target Start/End: Complemental strand, 35698184 - 35697974
Alignment:
| Q |
20 |
tatgaataaatccccgacaaagaaaataaaccatagtagagtagaattaaaattcccaaatccttattatctttaactaacgaaaagacggacactaagt |
119 |
Q |
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| T |
35698184 |
tatgaataaatccccgacaaagaaaataaaccatagtagagtagaattaaaattcccaaatctttattatctttaactaacgaaaagacggacactaagt |
35698085 |
T |
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| Q |
120 |
catcgctgtatgaaacagtggagttggaaaaacttcatcgatgaatcaaaatgtgcagaagaagtttagtctgcaacacaaag--ctacaattggtgtga |
217 |
Q |
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| T |
35698084 |
catcgttgtatgaaacagtggagttggaaaaacttcattgatgaatcaaaatgtgcagaagaagtttagtctgcaatacaaagctctacaattggtgtga |
35697985 |
T |
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| Q |
218 |
gttttatcact |
228 |
Q |
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|||||||||| |
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| T |
35697984 |
attttatcact |
35697974 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 158; E-Value: 6e-84
Query Start/End: Original strand, 224 - 405
Target Start/End: Complemental strand, 35697897 - 35697717
Alignment:
| Q |
224 |
tcactcttttatgctgagttaaaattcattggtgttaaacattttacatgtcttcttgattttatctgcaagcactcgatcactatgttagcaatattac |
323 |
Q |
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|||||||||||||| ||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
35697897 |
tcactcttttatgcagagttaaaattcactggtgttagacattttacatgtcttcttgattttatctgcaagcactcaatcactatgttagcaatattac |
35697798 |
T |
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| Q |
324 |
ttttgcttcattgcttgtaatttagtaattacaccacttctttgtaccttgttgtatgcttaattattaatgaagatctttt |
405 |
Q |
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| T |
35697797 |
ttttgcttcattgcttgtaatttagtaattacaccacttc-ttgtaccttgttgtatgcttaattattaatgaagatctttt |
35697717 |
T |
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