View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8800_high_1 (Length: 522)
Name: NF8800_high_1
Description: NF8800
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8800_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 345; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 156 - 504
Target Start/End: Original strand, 14337744 - 14338092
Alignment:
| Q |
156 |
atgctattgctacataatctttattttattttggtcctatggttttgtgtttgaagatttggacgatcttgtagtcaaagaaggcttcatcttcactata |
255 |
Q |
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| T |
14337744 |
atgctattgctacataatctttattttattttggtcctatggttttgtgtttgaagatttggacgatcttgtagtcaaagaaggcttcatcttcactata |
14337843 |
T |
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| Q |
256 |
ttttcatcactaactcccattttctttgcataacgacctgcttcaaagaacctcttaactgcttcatccatgtaatattttccttgcttaacactcatgt |
355 |
Q |
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| T |
14337844 |
ttttcatcactaactcccattttctttgcataacgacctgcttcaaagaacctcttaactgcttcatccatgtaatattttccttgcttaacactcatgt |
14337943 |
T |
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| Q |
356 |
ctttccctatagtatttggataactagtgaagatattgtctccttttagcactgctgcaagttggatcaactcctgctgaaattcacttagctttgcatc |
455 |
Q |
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| T |
14337944 |
ctttccctatagtatttggataactagtgaagatattgtctccttttagcactgctgcaagttggatcaactcctgctgaaattcacttagctttgcatc |
14338043 |
T |
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| Q |
456 |
ttcatttgcctctccctttcttaactttatcggggttggaagctgttct |
504 |
Q |
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| T |
14338044 |
ttcatttgcctctccctttcttaactttatcggggtcggaagctgttct |
14338092 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 48 - 93
Target Start/End: Original strand, 14337635 - 14337680
Alignment:
| Q |
48 |
aaaccatatatttaagttctcattatgttttaaagaaagcatattg |
93 |
Q |
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| T |
14337635 |
aaaccatatatttaagttctcattattttttaaagaaagcatattg |
14337680 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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