View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8800_high_2 (Length: 487)
Name: NF8800_high_2
Description: NF8800
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8800_high_2 |
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Alignment Details
Target: chr8 (Bit Score: 439; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 439; E-Value: 0
Query Start/End: Original strand, 17 - 471
Target Start/End: Original strand, 41810654 - 41811108
Alignment:
| Q |
17 |
gaactggaagagcagaagattgttaaaagtaatgaagcttcaactcgggccgaaagcaatacaaatgaggtgaatgtattgcggcaggaagtggagtctc |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41810654 |
gaactggaagagcagaagattgttaaaagtaatgaagcttcaactcgggccgaaagcaatacaaatgaggtgaatgtattgcggcaggaagtggagtctc |
41810753 |
T |
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| Q |
117 |
tacaacaccagaaatctgacttggaagttcagcttgtggaaaaaagccgagaaaattctgagtgtacgattcaaattcaaagtctgaaagaggaggttgg |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41810754 |
tacaacaccagaaatctgacttggaagttcagcttgtggaaaaaagccgagaaaattctgagtgtacgattcaaattcaaagtctgaaagaggaggttga |
41810853 |
T |
|
| Q |
217 |
gagaaaaaccctggagcaagagagacttatggaagataaagaaaatttaacgatgcgtataaggagtctggaattggagatgggcactataaagagcaaa |
316 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41810854 |
gagaaaaaccctggagcaagagagacttacggaagataaagaaaatttaacgatgcatataaggagtctggaattggagatgggcactataaagagcaaa |
41810953 |
T |
|
| Q |
317 |
agtagcgaagatgaagagcaaataaaggctaacatccaagtgattagtcatctgacacagcagaagttggagctacacgacagaatagcaaaattagaga |
416 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41810954 |
agtagcgaagatgaagagcaaataaaggccaacatccaagtgattagtcatctgacacagcagaagttggagctacacgacagaatagcaaaattagaga |
41811053 |
T |
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| Q |
417 |
aaatatcagatgagagagaatcggagttattagttttccaagataagcttaataa |
471 |
Q |
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| T |
41811054 |
aaatatcagatgagagagaatcggagttattagttttccaagataagcttaataa |
41811108 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 173; E-Value: 8e-93
Query Start/End: Original strand, 17 - 369
Target Start/End: Original strand, 41797465 - 41797817
Alignment:
| Q |
17 |
gaactggaagagcagaagattgttaaaagtaatgaagcttcaactcgggccgaaagcaatacaaatgaggtgaatgtattgcggcaggaagtggagtctc |
116 |
Q |
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|||||||||||| | | ||| |||||||||||||||| |||||||| | ||||||| |||||||||| ||||||| |||| ||||||||||||||||| |
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| T |
41797465 |
gaactggaagagaaaataatttttaaaagtaatgaagcctcaactcgagttgaaagcattacaaatgagctgaatgttttgcagcaggaagtggagtctc |
41797564 |
T |
|
| Q |
117 |
tacaacaccagaaatctgacttggaagttcagcttgtggaaaaaagccgagaaaattctgagtgtacgattcaaattcaaagtctgaaagaggaggttgg |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||| | |||||||||||| ||||||| |||||| ||| |
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| T |
41797565 |
tacaacaccagaaatctgacttggaagttcagcttgtggaaaaaagccaagaaaattccgagtgttcaattcaaattcaatgtctgaaggaggagtttga |
41797664 |
T |
|
| Q |
217 |
gagaaaaaccctggagcaagagagacttatggaagataaagaaaatttaacgatgcgtataaggagtctggaattggagatgggcactataaagagcaaa |
316 |
Q |
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|||||| ||||||| |||||||||||||||||||| | |||||||||||| | || |||| || ||||||| |||||||| | || || ||||||||| |
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| T |
41797665 |
cagaaaatccctggaacaagagagacttatggaagacagagaaaatttaaccaggcagataaagaatctggaactggagatgagtaccattaagagcaaa |
41797764 |
T |
|
| Q |
317 |
agtagcgaagatgaagagcaaataaaggctaacatccaagtgattagtcatct |
369 |
Q |
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| |||| |||| ||||||||||||| | | ||| |||||||||| |||||||| |
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| T |
41797765 |
aatagcaaagacgaagagcaaataaggaccaacgtccaagtgatcagtcatct |
41797817 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 17 - 264
Target Start/End: Original strand, 41797072 - 41797319
Alignment:
| Q |
17 |
gaactggaagagcagaagattgttaaaagtaatgaagcttcaactcgggccgaaagcaatacaaatgaggtgaatgtattgcggcaggaagtggagtctc |
116 |
Q |
| |
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||||||||||| || | ||| |||||||||||||||| |||||||| | |||||||| |||||||||| |||||| ||| | ||||||||||||||||| |
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| T |
41797072 |
gaactggaagaacatataattcttaaaagtaatgaagcctcaactcgagtcgaaagcattacaaatgagctgaatgcattacagcaggaagtggagtctc |
41797171 |
T |
|
| Q |
117 |
tacaacaccagaaatctgacttggaagttcagcttgtggaaaaaagccgagaaaattctgagtgtacgattcaaattcaaagtctgaaagaggaggttgg |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| | |||||||||| |||||||||||||||||||| |
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| T |
41797172 |
tacaacaccagaaatctgacttggaagttcagcttgtggaaaaaagccaagaaaattctgagtgttcaattcaaattcgaagtctgaaagaggaggttga |
41797271 |
T |
|
| Q |
217 |
gagaaaaaccctggagcaagagagacttatggaagataaagaaaattt |
264 |
Q |
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|||||| ||||||| ||||||||||||| |||||| | ||||||||| |
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| T |
41797272 |
cagaaaatccctggaacaagagagacttacggaagacagagaaaattt |
41797319 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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