View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8800_high_5 (Length: 324)
Name: NF8800_high_5
Description: NF8800
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8800_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 1 - 305
Target Start/End: Original strand, 35246737 - 35247040
Alignment:
| Q |
1 |
tagcttcttactttgcatttcaacggatgtaataacacagtaacacaactcaataattaagtagcaacttaccatagagcaacaggaagaggctaccatt |
100 |
Q |
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||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
35246737 |
tagcttcttactttgcatttcaatggatgtaata-cacagtaacacaactcaataattaagtagcaacttaccatagagcaacatgaagaggctaccatt |
35246835 |
T |
|
| Q |
101 |
cggaagatattcatacgccagaagtttctcttgctgagagcaatagtatgcaacaggtgacattacaagagtatgcttcacttgagctattaagttcatc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35246836 |
cggaagatattcatacgccagaagtttctcttgctgagagcaatagtatgcaacaggtgacattacaagagtatgcttcacttgagctattaagttcatc |
35246935 |
T |
|
| Q |
201 |
cttctctcgaattcatgcttcgaaatcccccaatccttgatcctcttaacagccaaaagcacaccattatctagcataactttgtataggcttccatgtt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35246936 |
cttctctcgaattcatgcttcgaaatcccccaatccttgatcctcttaacagccaaaagcacaccattatctagcataactttgtataggcttccatgtt |
35247035 |
T |
|
| Q |
301 |
ttcct |
305 |
Q |
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||||| |
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| T |
35247036 |
ttcct |
35247040 |
T |
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