View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8800_high_7 (Length: 268)

Name: NF8800_high_7
Description: NF8800
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8800_high_7
NF8800_high_7
[»] chr3 (8 HSPs)
chr3 (29-268)||(35246497-35246736)
chr3 (171-221)||(28779328-28779378)
chr3 (171-216)||(48807685-48807730)
chr3 (102-179)||(2923530-2923607)
chr3 (176-221)||(19679381-19679426)
chr3 (175-216)||(23249535-23249576)
chr3 (175-216)||(24235735-24235776)
chr3 (171-216)||(45590641-45590686)
[»] chr5 (5 HSPs)
chr5 (175-221)||(18704088-18704134)
chr5 (171-221)||(36539718-36539768)
chr5 (175-216)||(34205216-34205257)
chr5 (175-208)||(14470337-14470370)
chr5 (175-211)||(34245706-34245742)
[»] chr7 (7 HSPs)
chr7 (171-212)||(25507330-25507371)
chr7 (171-212)||(25558239-25558280)
chr7 (171-212)||(25558437-25558478)
chr7 (98-174)||(30751576-30751652)
chr7 (175-221)||(23721478-23721524)
chr7 (175-216)||(24909641-24909682)
chr7 (181-221)||(49060512-49060552)
[»] chr6 (4 HSPs)
chr6 (171-216)||(2117380-2117425)
chr6 (175-221)||(4006686-4006732)
chr6 (181-214)||(31420937-31420970)
chr6 (182-214)||(10452419-10452451)
[»] chr4 (8 HSPs)
chr4 (175-214)||(42866047-42866086)
chr4 (182-221)||(46175852-46175891)
chr4 (100-174)||(2996630-2996704)
chr4 (171-221)||(18628591-18628641)
chr4 (171-216)||(7694058-7694103)
chr4 (171-216)||(30581725-30581770)
chr4 (176-221)||(49219111-49219156)
chr4 (171-215)||(19250525-19250568)
[»] chr1 (5 HSPs)
chr1 (181-216)||(29007774-29007809)
chr1 (175-214)||(42556683-42556722)
chr1 (175-216)||(4078201-4078242)
chr1 (171-216)||(15488931-15488976)
chr1 (188-216)||(6262716-6262744)
[»] chr8 (2 HSPs)
chr8 (175-221)||(29973053-29973099)
chr8 (177-221)||(45071174-45071218)
[»] chr2 (4 HSPs)
chr2 (183-221)||(31740019-31740057)
chr2 (175-221)||(35485889-35485935)
chr2 (175-216)||(10143149-10143190)
chr2 (171-216)||(37276723-37276768)


Alignment Details
Target: chr3 (Bit Score: 220; Significance: 1e-121; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 29 - 268
Target Start/End: Original strand, 35246497 - 35246736
Alignment:
Q  29 ttattctgagtctaaatttcattaattcaggcatgtgcttgtaggctaacacattaattgcttactgtataaacttatttattgacataagcacttgata 128  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  35246497 ttattctgagtctaaatttcatcaattcaggcatgtgcttgtaggctaacaaattaattgcttactgtataaacttatttattgacataagcacttgata 35246596  T
Q  129 aagtgtttggtagagcttatacaaacaacttatagcatgtccataacttataaaaacaacttatagcttatataaaaatagtttgactatattgtctctt 228  Q
    |||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35246597 aagtgtttggtagagcttatgcaaacaacttataacatgtccataacttataaaaacaacttatagcttatataaaaatagtttgactatattgtctctt 35246696  T
Q  229 agactataacttatggataagtgcataaaacttcgcacac 268  Q
    ||||||||||||||||||||| ||||||||||||||||||    
T  35246697 agactataacttatggataagcgcataaaacttcgcacac 35246736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 171 - 221
Target Start/End: Complemental strand, 28779378 - 28779328
Alignment:
Q  171 ataacttataaaaacaacttatagcttatataaaaatagtttgactatatt 221  Q
    |||||||| |||||||||||||||||||||| |||||||||||||| ||||    
T  28779378 ataacttacaaaaacaacttatagcttatatgaaaatagtttgactttatt 28779328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 171 - 216
Target Start/End: Complemental strand, 48807730 - 48807685
Alignment:
Q  171 ataacttataaaaacaacttatagcttatataaaaatagtttgact 216  Q
    ||||||||| ||||||||||||||||| ||| ||||||||||||||    
T  48807730 ataacttatgaaaacaacttatagcttctatgaaaatagtttgact 48807685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 102 - 179
Target Start/End: Complemental strand, 2923607 - 2923530
Alignment:
Q  102 cttatttattgacataagcacttgataaagtgtttggtagagcttatacaaacaacttatagcatgtccataacttat 179  Q
    ||||| |||||||||||| |||||| | | ||||||| ||| |||||| ||||||||||   ||||||||||| ||||    
T  2923607 cttatctattgacataagtacttgaaagactgtttggaagaacttatagaaacaacttactacatgtccataagttat 2923530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 176 - 221
Target Start/End: Original strand, 19679381 - 19679426
Alignment:
Q  176 ttataaaaacaacttatagcttatataaaaatagtttgactatatt 221  Q
    |||||||||||||||||||||||||  |||| ||||||||| ||||    
T  19679381 ttataaaaacaacttatagcttataagaaaacagtttgactttatt 19679426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 175 - 216
Target Start/End: Complemental strand, 23249576 - 23249535
Alignment:
Q  175 cttataaaaacaacttatagcttatataaaaatagtttgact 216  Q
    ||||| ||||||||||||| |||||||||||| |||||||||    
T  23249576 cttatgaaaacaacttatatcttatataaaaacagtttgact 23249535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 175 - 216
Target Start/End: Original strand, 24235735 - 24235776
Alignment:
Q  175 cttataaaaacaacttatagcttatataaaaatagtttgact 216  Q
    ||||| |||||||||||||||||||||  |||||||||||||    
T  24235735 cttatgaaaacaacttatagcttatattcaaatagtttgact 24235776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 171 - 216
Target Start/End: Complemental strand, 45590686 - 45590641
Alignment:
Q  171 ataacttataaaaacaacttatagcttatataaaaatagtttgact 216  Q
    ||||||||| ||||||||||||| ||||||| ||||||| ||||||    
T  45590686 ataacttatgaaaacaacttatatcttatatgaaaatagattgact 45590641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.00000000009; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 175 - 221
Target Start/End: Original strand, 18704088 - 18704134
Alignment:
Q  175 cttataaaaacaacttatagcttatataaaaatagtttgactatatt 221  Q
    ||||| ||||||||||||||||||||||||||||| |||||| ||||    
T  18704088 cttatgaaaacaacttatagcttatataaaaatagcttgactttatt 18704134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 171 - 221
Target Start/End: Complemental strand, 36539768 - 36539718
Alignment:
Q  171 ataacttataaaaacaacttatagcttatataaaaatagtttgactatatt 221  Q
    ||||||||||||||||||||||||||||||| |||| || |||||| ||||    
T  36539768 ataacttataaaaacaacttatagcttatatgaaaacaggttgactttatt 36539718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 175 - 216
Target Start/End: Complemental strand, 34205257 - 34205216
Alignment:
Q  175 cttataaaaacaacttatagcttatataaaaatagtttgact 216  Q
    ||||| |||||||||||||||||||||||||||| |||||||    
T  34205257 cttatgaaaacaacttatagcttatataaaaataatttgact 34205216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 175 - 208
Target Start/End: Complemental strand, 14470370 - 14470337
Alignment:
Q  175 cttataaaaacaacttatagcttatataaaaata 208  Q
    ||||||||||||| ||||||||||||||||||||    
T  14470370 cttataaaaacaaattatagcttatataaaaata 14470337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 175 - 211
Target Start/End: Complemental strand, 34245742 - 34245706
Alignment:
Q  175 cttataaaaacaacttatagcttatataaaaatagtt 211  Q
    ||||||||||||||||||||||||||| |||| ||||    
T  34245742 cttataaaaacaacttatagcttatattaaaacagtt 34245706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 171 - 212
Target Start/End: Complemental strand, 25507371 - 25507330
Alignment:
Q  171 ataacttataaaaacaacttatagcttatataaaaatagttt 212  Q
    ||||||||| ||||||||||||||||||||| ||||||||||    
T  25507371 ataacttatgaaaacaacttatagcttatatgaaaatagttt 25507330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 171 - 212
Target Start/End: Original strand, 25558239 - 25558280
Alignment:
Q  171 ataacttataaaaacaacttatagcttatataaaaatagttt 212  Q
    ||||||||| ||||||||||||||||||||| ||||||||||    
T  25558239 ataacttatgaaaacaacttatagcttatatgaaaatagttt 25558280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 171 - 212
Target Start/End: Original strand, 25558437 - 25558478
Alignment:
Q  171 ataacttataaaaacaacttatagcttatataaaaatagttt 212  Q
    ||||||||| ||||||||||||||||||||| ||||||||||    
T  25558437 ataacttatgaaaacaacttatagcttatatgaaaatagttt 25558478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 98 - 174
Target Start/End: Complemental strand, 30751652 - 30751576
Alignment:
Q  98 taaacttatttattgacataagcacttgataaagtgtttggtagagcttatacaaacaacttatagcatgtccataa 174  Q
    ||||||||| || |||||||||||||||    | ||||||| |||||||||| |||||  |||||||||||||||||    
T  30751652 taaacttatctactgacataagcacttgtgcgactgtttgggagagcttatagaaacagtttatagcatgtccataa 30751576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 175 - 221
Target Start/End: Complemental strand, 23721524 - 23721478
Alignment:
Q  175 cttataaaaacaacttatagcttatataaaaatagtttgactatatt 221  Q
    |||||||||||||||||||| ||| || |||||||||||||| ||||    
T  23721524 cttataaaaacaacttatagtttaaatgaaaatagtttgactttatt 23721478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 175 - 216
Target Start/End: Complemental strand, 24909682 - 24909641
Alignment:
Q  175 cttataaaaacaacttatagcttatataaaaatagtttgact 216  Q
    ||||| ||||||||||||||||||||| |||||| |||||||    
T  24909682 cttatgaaaacaacttatagcttatatgaaaataatttgact 24909641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 181 - 221
Target Start/End: Complemental strand, 49060552 - 49060512
Alignment:
Q  181 aaaacaacttatagcttatataaaaatagtttgactatatt 221  Q
    |||| ||||||||||||||||||||||| ||||||| ||||    
T  49060552 aaaataacttatagcttatataaaaataatttgactttatt 49060512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000004; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 171 - 216
Target Start/End: Complemental strand, 2117425 - 2117380
Alignment:
Q  171 ataacttataaaaacaacttatagcttatataaaaatagtttgact 216  Q
    ||||||||| |||||||||||||| |||||| ||||||||||||||    
T  2117425 ataacttatgaaaacaacttatagattatatgaaaatagtttgact 2117380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 175 - 221
Target Start/End: Complemental strand, 4006732 - 4006686
Alignment:
Q  175 cttataaaaacaacttatagcttatataaaaatagtttgactatatt 221  Q
    ||||| |||||||||||||||||||||||||| | ||||||| ||||    
T  4006732 cttatgaaaacaacttatagcttatataaaaacaatttgactttatt 4006686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 181 - 214
Target Start/End: Complemental strand, 31420970 - 31420937
Alignment:
Q  181 aaaacaacttatagcttatataaaaatagtttga 214  Q
    ||||||||||||| ||||||||||||||||||||    
T  31420970 aaaacaacttatatcttatataaaaatagtttga 31420937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 182 - 214
Target Start/End: Original strand, 10452419 - 10452451
Alignment:
Q  182 aaacaacttatagcttatataaaaatagtttga 214  Q
    |||||||||||||||||||| ||||||||||||    
T  10452419 aaacaacttatagcttatatgaaaatagtttga 10452451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.000000006; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 175 - 214
Target Start/End: Complemental strand, 42866086 - 42866047
Alignment:
Q  175 cttataaaaacaacttatagcttatataaaaatagtttga 214  Q
    ||||| |||||||||||||||||||||||||| |||||||    
T  42866086 cttatgaaaacaacttatagcttatataaaaacagtttga 42866047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 182 - 221
Target Start/End: Original strand, 46175852 - 46175891
Alignment:
Q  182 aaacaacttatagcttatataaaaatagtttgactatatt 221  Q
    ||||||||| ||||||||||||||| ||||||||||||||    
T  46175852 aaacaacttttagcttatataaaaacagtttgactatatt 46175891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 100 - 174
Target Start/End: Complemental strand, 2996704 - 2996630
Alignment:
Q  100 aacttatttattgacataagcacttgataaagtgtttggtagagcttatacaaacaacttatagcatgtccataa 174  Q
    |||||||||||||||||||||||||   | | ||||||  |||||||||  |||||||||||  |||||||||||    
T  2996704 aacttatttattgacataagcacttttgagactgtttgagagagcttatgaaaacaacttatgacatgtccataa 2996630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 171 - 221
Target Start/End: Original strand, 18628591 - 18628641
Alignment:
Q  171 ataacttataaaaacaacttatagcttatataaaaatagtttgactatatt 221  Q
    ||||||||| ||||||  ||||| |||||||||||| ||||||||||||||    
T  18628591 ataacttatgaaaacagtttataacttatataaaaacagtttgactatatt 18628641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 171 - 216
Target Start/End: Original strand, 7694058 - 7694103
Alignment:
Q  171 ataacttataaaaacaacttatagcttatataaaaatagtttgact 216  Q
    ||||||||| |||||| ||||||||||||| ||||| |||||||||    
T  7694058 ataacttatgaaaacagcttatagcttatacaaaaacagtttgact 7694103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 171 - 216
Target Start/End: Original strand, 30581725 - 30581770
Alignment:
Q  171 ataacttataaaaacaacttatagcttatataaaaatagtttgact 216  Q
    ||||||||| |||||| |||||||||||||  ||||||||||||||    
T  30581725 ataacttattaaaacagcttatagcttatacgaaaatagtttgact 30581770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 176 - 221
Target Start/End: Complemental strand, 49219156 - 49219111
Alignment:
Q  176 ttataaaaacaacttatagcttatataaaaatagtttgactatatt 221  Q
    |||| ||||||||||||||||||||| |||||| ||||||| ||||    
T  49219156 ttatgaaaacaacttatagcttatatgaaaataatttgactttatt 49219111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 171 - 215
Target Start/End: Complemental strand, 19250568 - 19250525
Alignment:
Q  171 ataacttataaaaacaacttatagcttatataaaaatagtttgac 215  Q
    ||||||||||||||||||||||||| ||||| |||| ||||||||    
T  19250568 ataacttataaaaacaacttatagc-tatatcaaaacagtttgac 19250525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.000000006; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 181 - 216
Target Start/End: Original strand, 29007774 - 29007809
Alignment:
Q  181 aaaacaacttatagcttatataaaaatagtttgact 216  Q
    ||||||||||||||||||||| ||||||||||||||    
T  29007774 aaaacaacttatagcttatatgaaaatagtttgact 29007809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 175 - 214
Target Start/End: Original strand, 42556683 - 42556722
Alignment:
Q  175 cttataaaaacaacttatagcttatataaaaatagtttga 214  Q
    ||||| ||||||||||||||||||||||||| ||||||||    
T  42556683 cttatgaaaacaacttatagcttatataaaagtagtttga 42556722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 175 - 216
Target Start/End: Original strand, 4078201 - 4078242
Alignment:
Q  175 cttataaaaacaacttatagcttatataaaaatagtttgact 216  Q
    ||||| |||||||||||||| |||||| ||||||||||||||    
T  4078201 cttatgaaaacaacttatagattatatgaaaatagtttgact 4078242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 171 - 216
Target Start/End: Complemental strand, 15488976 - 15488931
Alignment:
Q  171 ataacttataaaaacaacttatagcttatataaaaatagtttgact 216  Q
    ||||||||| || ||||| |||| ||||||||||||||||||||||    
T  15488976 ataacttatgaagacaacgtatatcttatataaaaatagtttgact 15488931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 188 - 216
Target Start/End: Complemental strand, 6262744 - 6262716
Alignment:
Q  188 cttatagcttatataaaaatagtttgact 216  Q
    |||||||||||||||||||||||||||||    
T  6262744 cttatagcttatataaaaatagtttgact 6262716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 175 - 221
Target Start/End: Complemental strand, 29973099 - 29973053
Alignment:
Q  175 cttataaaaacaacttatagcttatataaaaatagtttgactatatt 221  Q
    ||||| ||||||||||||||||||| | |||||||||||||| ||||    
T  29973099 cttatgaaaacaacttatagcttatgtgaaaatagtttgactttatt 29973053  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 177 - 221
Target Start/End: Complemental strand, 45071218 - 45071174
Alignment:
Q  177 tataaaaacaacttatagcttatataaaaatagtttgactatatt 221  Q
    |||||||||| ||||||||||||||||||| | ||||||| ||||    
T  45071218 tataaaaacagcttatagcttatataaaaacaatttgactttatt 45071174  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 183 - 221
Target Start/End: Original strand, 31740019 - 31740057
Alignment:
Q  183 aacaacttatagcttatataaaaatagtttgactatatt 221  Q
    ||||||||||||||||||| |||||||||||||| ||||    
T  31740019 aacaacttatagcttatatgaaaatagtttgactttatt 31740057  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 175 - 221
Target Start/End: Complemental strand, 35485935 - 35485889
Alignment:
Q  175 cttataaaaacaacttatagcttatataaaaatagtttgactatatt 221  Q
    ||||||||||||||||||||||||||   ||||||||||||| ||||    
T  35485935 cttataaaaacaacttatagcttataatgaaatagtttgactttatt 35485889  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 175 - 216
Target Start/End: Complemental strand, 10143190 - 10143149
Alignment:
Q  175 cttataaaaacaacttatagcttatataaaaatagtttgact 216  Q
    ||||| |||| ||||||||||||||||||||| |||||||||    
T  10143190 cttatgaaaaaaacttatagcttatataaaaacagtttgact 10143149  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 171 - 216
Target Start/End: Complemental strand, 37276768 - 37276723
Alignment:
Q  171 ataacttataaaaacaacttatagcttatataaaaatagtttgact 216  Q
    ||||||||| ||||||||||||| ||||||| |||| |||||||||    
T  37276768 ataacttatgaaaacaacttataacttatatgaaaacagtttgact 37276723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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