View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8800_low_3 (Length: 359)
Name: NF8800_low_3
Description: NF8800
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8800_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 315; Significance: 1e-177; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 18 - 355
Target Start/End: Original strand, 2498285 - 2498623
Alignment:
| Q |
18 |
attagtttcaaaatttatttaagaataaaacttaaattctactaatctttcaccaaaaaatcccttaaattctaatcacacaaattacaaaattcaaggg |
117 |
Q |
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| T |
2498285 |
attagtttcaaaatttatttaagaataaaacttaaattctactaatctttcaccaagaaatcccttaaattctaatcacacaaattacaaaattcaaggg |
2498384 |
T |
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| Q |
118 |
attttaaacacaactaacataaccacaaaaccactcataatataaacaaacataatctcagcaaataacataattttatatgcaattta-tttttaaaaa |
216 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||| |
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| T |
2498385 |
attttaaacacaactcacataaccacaaaaccactcataatataaacaaacataatctcagcaaataacataattttatatgaaatttattttttaaaaa |
2498484 |
T |
|
| Q |
217 |
ctatgatatatcatatccaaaattattaattaatcaactgattagactcaagcggttaataagatacaattaaaggaaagaatccgagttcaaattctaa |
316 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2498485 |
ctatgatatatcatatccaaaattattaattaatcaagtgattagactcaagcggttaataagatacaattaaaggaaagaatccgagttcaaattctaa |
2498584 |
T |
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| Q |
317 |
cttgaacaatcattacttactgccaccgaactccaaact |
355 |
Q |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
2498585 |
cttgaacaatcattacttactgccaccgaactccaaact |
2498623 |
T |
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