View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8801_high_4 (Length: 236)
Name: NF8801_high_4
Description: NF8801
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8801_high_4 |
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Alignment Details
Target: chr6 (Bit Score: 190; Significance: 1e-103; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 13 - 218
Target Start/End: Complemental strand, 35033001 - 35032796
Alignment:
| Q |
13 |
ataatactgtttattgagttattaataaataagcaaataataaccatcatgataatttgtacaggtaccttccaccttacacctcattcctcccttggga |
112 |
Q |
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| T |
35033001 |
ataatactgtttactgagttattaataaataagcaaataataaccatcatgataatttgtacaggtaccttccaccttacacctcattcctcccttggga |
35032902 |
T |
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| Q |
113 |
agacaatgggaaaatgtcagaaagcagtgagaggaagcagaataagagaagagaaaaagtaacagagaataaagtattatctcgaatatcttatttagtc |
212 |
Q |
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|||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
35032901 |
agacaatgggaaaatgtcggaaagcagtgagagaaagcagaataagagaagagaaaaagtaacagagaataaaatattatctcgaatatcttatttagtc |
35032802 |
T |
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| Q |
213 |
attttc |
218 |
Q |
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|||||| |
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| T |
35032801 |
attttc |
35032796 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 75 - 182
Target Start/End: Complemental strand, 34953392 - 34953288
Alignment:
| Q |
75 |
aggtaccttccaccttacacctcattcctcccttgggaagacaatgggaaaatgtcagaaagcagtgagaggaagcagaataagagaagagaaaaagtaa |
174 |
Q |
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||||||||||| |||||||||||||||||||| | | || | |||||||||| ||||||| |||| | |||| ||| |||||||||| |||||| | |
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| T |
34953392 |
aggtaccttcctccttacacctcattcctcccattgaaatatgatgggaaaatttcagaaaacagt---aagaagatgaaaaagagaagaggaaaagtta |
34953296 |
T |
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| Q |
175 |
cagagaat |
182 |
Q |
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|||||||| |
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| T |
34953295 |
cagagaat |
34953288 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 70 - 106
Target Start/End: Complemental strand, 34972106 - 34972070
Alignment:
| Q |
70 |
tgtacaggtaccttccaccttacacctcattcctccc |
106 |
Q |
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| T |
34972106 |
tgtacaggtaccttcctccttacacctcattcctccc |
34972070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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