View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8801_low_1 (Length: 437)
Name: NF8801_low_1
Description: NF8801
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8801_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 369; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 18 - 426
Target Start/End: Original strand, 31357512 - 31357920
Alignment:
| Q |
18 |
catcagagtctctcccaaaagaaaagatgttctttgaggttgttccaatattttcattctccaactgcatcctcaacaatgattgttcttgagagaagaa |
117 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
31357512 |
catcagagtctctcccaaaagaaaagatgttctttgaggttgttccaatattctcattctccaactgcatcctcaacagcaattgttcttgagagaagaa |
31357611 |
T |
|
| Q |
118 |
aaagtttgacgaattcccgaccattgaggttaggttcaaatcagcagttattacttcagctaaaggataaacatccatttgttttgaagaggatgaaatg |
217 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
31357612 |
aaagtttgacgaattcccgaccattgaggtttggttcaaatcagcagctattacttcagctaaaggataaacatccaattgttttgaagaggatgaaatg |
31357711 |
T |
|
| Q |
218 |
ttcaagatgctagtttcattgttatgaacaatgttgtcatcttgtgattttggtttcaccttgttttgagagaaatcagaaagagtgttttggttttcac |
317 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
31357712 |
ttcaagatactagtttcattgttatgaacaatgttgtcatcttgtgattttggtttcaccttgttttgagagaaatcagaaagagtggtttggttttcac |
31357811 |
T |
|
| Q |
318 |
tattgtatggagaagaatccaataattgaggcaattgagattcattagtatttgatggtccttctctagaggagttaaaccttccatgttttgaaccatc |
417 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31357812 |
tattgtatggagaagaatccaataattgaggcaatagagattcattagtatttgatggtccttctctagaggagttaaaccttccatgttttgaaccatc |
31357911 |
T |
|
| Q |
418 |
ctttttctt |
426 |
Q |
| |
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||||||||| |
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| T |
31357912 |
ctttttctt |
31357920 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 50 - 426
Target Start/End: Original strand, 31346884 - 31347260
Alignment:
| Q |
50 |
tttgaggttgttccaatattttcattctccaactgcatcctcaacaatgattgttcttgagagaagaaaaagtttgacgaattcccgaccattgaggtta |
149 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
31346884 |
tttgaggttgttccaatattctcattctccaactgcatcctcaacagcgattggtcttgagagaagaaaaagtttgacgaatttccgaccattgaggttt |
31346983 |
T |
|
| Q |
150 |
ggttcaaatcagcagttattacttcagctaaaggataaacatccatttgttttgaagaggatgaaatgttcaagatgctagtttcattgttatgaacaat |
249 |
Q |
| |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
31346984 |
ggttcaaatcagcagctattacttcagctaaaggataaacatccatttgttttgaagaggatgaaatgttcaagatactagtttcattgttatgaacaat |
31347083 |
T |
|
| Q |
250 |
gttgtcatcttgtgattttggtttcaccttgttttgagagaaatcagaaagagtgttttggttttcactattgtatggagaagaatccaataattgaggc |
349 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31347084 |
gttgtcatcttgtgattttggtttcaccttgttttgagagaaatcagaaagagtggtttggttttcactattgtatggagaagaatccaataattgaggc |
31347183 |
T |
|
| Q |
350 |
aattgagattcattagtatttgatggtccttctctagaggagttaaaccttccatgttttgaaccatcctttttctt |
426 |
Q |
| |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
31347184 |
aatagagattcattagtatttgatggtccttctctagaggagttaaaccttccatgttttgaaacatcctttttctt |
31347260 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 103; Significance: 4e-51; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 121 - 274
Target Start/End: Complemental strand, 29272460 - 29272304
Alignment:
| Q |
121 |
gtttgacgaattcccgaccattgaggttaggttcaaatcagcagttattacttcagctaaagg---ataaacatccatttgttttgaagaggatgaaatg |
217 |
Q |
| |
|
|||||| ||||||||||||||||||||| |||| |||||||| || || ||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
29272460 |
gtttgatgaattcccgaccattgaggtttggttggaatcagcaattgttgcttcagctaaagggttataaacatccatttgttttgaagaggatgaaatg |
29272361 |
T |
|
| Q |
218 |
ttcaagatgctagtttcattgttatgaacaatgttgtcatcttgtgattttggtttc |
274 |
Q |
| |
|
|||||||| |||||||||||||| |||||||||||||||||||||| |||||||||| |
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|
| T |
29272360 |
ttcaagatactagtttcattgttgtgaacaatgttgtcatcttgtgtttttggtttc |
29272304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 99; Significance: 1e-48; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 104 - 274
Target Start/End: Complemental strand, 2925822 - 2925652
Alignment:
| Q |
104 |
tcttgagagaagaaaaagtttgacgaattcccgaccattgaggttaggttcaaatcagcagttattacttcagctaaaggataaacatccatttgttttg |
203 |
Q |
| |
|
||||| ||||||||||||||||| ||||||||| |||||||||||||||| |||||| | || || |||||||||| ||||||||||||||||||| |
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| T |
2925822 |
tcttgggagaagaaaaagtttgaagaattcccggccattgaggttaggttgggatcagccactgttgctccagctaaagggtaaacatccatttgttttg |
2925723 |
T |
|
| Q |
204 |
aagaggatgaaatgttcaagatgctagtttcattgttatgaacaatgttgtcatcttgtgattttggtttc |
274 |
Q |
| |
|
|||| ||||||||||||||||| || |||||||||||||||||||||||||||| ||||| |||||||||| |
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| T |
2925722 |
aagacgatgaaatgttcaagatacttgtttcattgttatgaacaatgttgtcatattgtgtttttggtttc |
2925652 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 114 - 274
Target Start/End: Complemental strand, 2920430 - 2920267
Alignment:
| Q |
114 |
agaaaaagtttgacgaattcccgaccattgaggttaggttcaaatcagcagttattacttcagctaaagg---ataaacatccatttgttttgaagagga |
210 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||| |||| |||||||| | || ||||||| ||||| ||||||||||||||||||||||||||| |
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| T |
2920430 |
agaaaaagtttgatgaattcccgaccattgaggtttggttggaatcagcaactgttccttcagcgaaagggttataaacatccatttgttttgaagagga |
2920331 |
T |
|
| Q |
211 |
tgaaatgttcaagatgctagtttcattgttatgaacaatgttgtcatcttgtgattttggtttc |
274 |
Q |
| |
|
||||||||||||||| | ||||||||||||||||||||||||||||||||||| ||||| |||| |
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| T |
2920330 |
tgaaatgttcaagatacaagtttcattgttatgaacaatgttgtcatcttgtgtttttgatttc |
2920267 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 287 - 426
Target Start/End: Complemental strand, 2925612 - 2925470
Alignment:
| Q |
287 |
gagaaatcagaaagagtgttttggttttcactattgtatggagaagaatccaataattgaggcaattgagattc---attagtatttgatggtccttctc |
383 |
Q |
| |
|
|||||||||| || |||| ||| |||||||||||||| |||||| | ||||| ||| ||| | || ||||| | |||||||||||||||| |||||| |
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|
| T |
2925612 |
gagaaatcaggaatagtgattttattttcactattgtagggagaaaattccaaaaatggagcccatagagatgctgcattagtatttgatggttcttctc |
2925513 |
T |
|
| Q |
384 |
tagaggagttaaaccttccatgttttgaaccatcctttttctt |
426 |
Q |
| |
|
||||||||||| |||||||| |||||||||||| | ||||||| |
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|
| T |
2925512 |
tagaggagttagaccttccaagttttgaaccattcattttctt |
2925470 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 345 - 416
Target Start/End: Complemental strand, 2920241 - 2920170
Alignment:
| Q |
345 |
gaggcaattgagattcattagtatttgatggtccttctctagaggagttaaaccttccatgttttgaaccat |
416 |
Q |
| |
|
|||||||| ||| | ||||||||||||||||||||||||||||||||||| |||||||| |||||||||||| |
|
|
| T |
2920241 |
gaggcaatagagttgcattagtatttgatggtccttctctagaggagttagaccttccaagttttgaaccat |
2920170 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 88; Significance: 4e-42; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 115 - 274
Target Start/End: Complemental strand, 9447837 - 9447671
Alignment:
| Q |
115 |
gaaaaagtttgacgaattcccgaccattgaggttaggttcaaatcagcagttattacttcagctaaagg---ataaacatccatttgttttgaagaggat |
211 |
Q |
| |
|
|||||||||||| ||||||||||| ||||||||| |||| ||| |||| || || ||||||||||||| |||||||||||||||||||||||||||| |
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|
| T |
9447837 |
gaaaaagtttgatgaattcccgacaattgaggtttggttggaataagcaattgttgcttcagctaaagggttataaacatccatttgttttgaagaggat |
9447738 |
T |
|
| Q |
212 |
gaaatgttcaagatg----ctagtttcattgttatgaacaatgttgtcatcttgtgattttggtttc |
274 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||| ||||||| |||||||||| |
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|
| T |
9447737 |
gaaatgttcaagatatatactagtttcattgttatgaacaatgttgtcgtcttgtgtttttggtttc |
9447671 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 325 - 387
Target Start/End: Complemental strand, 9447611 - 9447549
Alignment:
| Q |
325 |
tggagaagaatccaataattgaggcaattgagattcattagtatttgatggtccttctctaga |
387 |
Q |
| |
|
||||||| ||||||| ||| |||||||| ||||| |||||||||||||||||||||||||||| |
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|
| T |
9447611 |
tggagaataatccaacaatggaggcaatagagatgcattagtatttgatggtccttctctaga |
9447549 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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