View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8801_low_2 (Length: 418)
Name: NF8801_low_2
Description: NF8801
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8801_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 363; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 1 - 399
Target Start/End: Complemental strand, 3602995 - 3602596
Alignment:
| Q |
1 |
aaaattaatataagctaagaaacaaaaatcaaagcatacgaagtctcttccacgactaggaatcatcagctctagcgtttgcttcccatgggcgtattga |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
3602995 |
aaaattaatataagctaagaaacaaaaatcaaagcatacgaagtctcttccacgactaggaatcatcagctctagcgtttgcttcccttgggcgtattga |
3602896 |
T |
|
| Q |
101 |
tgatgactcgatcaacgacaactccatgttcagtcatcataggtgaattaatcttgcataaagcctaggcgagttattttagaatagatgttctgcaatt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3602895 |
tgatgactcgatcaacgacaactccatgttcagtcatcataggtgaattaatcttgcataaagcctaggcgagttattttagaatagatgttctgcaatt |
3602796 |
T |
|
| Q |
201 |
gatcaattagtaactaactcactacattaaccaagggctaacttatggaaaccattttattaataacataaggatttgccaaaagctttatgatggttga |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3602795 |
gatcaattagtaactaactcactacattaaccaagggctaacttatggaaaccattttattaataacataaggatttgccaaaagctttatgatggttga |
3602696 |
T |
|
| Q |
301 |
taaaactaaattgaaaatttctttttccaac-nnnnnnnagactcttgagatatttagatctactgcttccgaactgattaacaatttgtgggtgttgtg |
399 |
Q |
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||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3602695 |
taaaactaaatcgaaaatttctttttccaacttttttttagactcttgagatatttagatctactgcttccgaactgattaacaatttgtgggtgttgtg |
3602596 |
T |
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