View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8801_low_3 (Length: 405)
Name: NF8801_low_3
Description: NF8801
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8801_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 316; Significance: 1e-178; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 1 - 380
Target Start/End: Original strand, 8304828 - 8305207
Alignment:
| Q |
1 |
atttgtaggcttagcatattatggagtcaggtcgcgagtttggataaaattgcgcattggccagatctagaacaattaccccacatcattgttcgatgga |
100 |
Q |
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| T |
8304828 |
atttgtaggcttagcatattatggagtcaggtcgcgagtttggatagaattgcacattggccagatctagaacaattaccccacatcatagttcgatgga |
8304927 |
T |
|
| Q |
101 |
gaggataattgacttaagagtttgcatcgttgaggccaatgcctgaaattcgaggaaaatgaccatgtgagttgctgatgtcatatattcttcaccttaa |
200 |
Q |
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||||||||||||| |||||||||||||| |||||| ||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
8304928 |
gaggataattgacctaagagtttgcatcattgaggtcaaggtctgaaattcgaggaaaatgaccatgtgagttgctgatgtcatatattcttcactttaa |
8305027 |
T |
|
| Q |
201 |
gcagtgaagactgaagaatatgacagaacacttaaatgtaagactgccaaagaaatttcgaacaccttataaactcagcataaaggcattaggcatgtgg |
300 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||| |||||||||||||||| ||||||| |
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| T |
8305028 |
acagtgaagactgaaaaatatgacagaacacttaaatgtaagacttccaaagaaattttaaacaccttataaacttagcataaaggcattagtcatgtgg |
8305127 |
T |
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| Q |
301 |
aggaaacaatggttgatattggagtaagaaaaactgaaatgttttagatgaaggatgatgcatccatagatgaaatgtat |
380 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8305128 |
aggaaacaatggttgatattggagtaagaaaaactgaaatgttttagatgaaggatgatgcatccatagatgaaatgtat |
8305207 |
T |
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