View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8801_low_4 (Length: 306)

Name: NF8801_low_4
Description: NF8801
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8801_low_4
NF8801_low_4
[»] chr6 (13 HSPs)
chr6 (17-134)||(31026778-31026894)
chr6 (199-298)||(31026959-31027058)
chr6 (74-133)||(9566469-9566528)
chr6 (17-133)||(78405-78518)
chr6 (17-132)||(11366388-11366497)
chr6 (239-291)||(31069880-31069932)
chr6 (236-295)||(31080519-31080578)
chr6 (19-133)||(32748050-32748161)
chr6 (239-298)||(31035393-31035452)
chr6 (17-132)||(10670507-10670618)
chr6 (60-133)||(10772383-10772456)
chr6 (238-283)||(31045854-31045899)
chr6 (241-293)||(31110415-31110467)
[»] chr2 (9 HSPs)
chr2 (17-133)||(6705140-6705252)
chr2 (17-133)||(40899749-40899862)
chr2 (17-132)||(27888299-27888410)
chr2 (23-132)||(33543927-33544033)
chr2 (19-132)||(28165415-28165525)
chr2 (75-133)||(14951453-14951511)
chr2 (56-133)||(38531955-38532033)
chr2 (91-132)||(1532826-1532867)
chr2 (64-132)||(6186865-6186933)
[»] chr1 (14 HSPs)
chr1 (17-133)||(15495507-15495620)
chr1 (47-132)||(29099063-29099148)
chr1 (47-133)||(26842700-26842784)
chr1 (47-132)||(47896349-47896435)
chr1 (17-132)||(10494319-10494431)
chr1 (47-133)||(4654204-4654290)
chr1 (55-133)||(40581094-40581172)
chr1 (47-132)||(27787275-27787360)
chr1 (56-132)||(8038864-8038940)
chr1 (47-125)||(11814179-11814257)
chr1 (17-132)||(25537235-25537348)
chr1 (57-132)||(2077979-2078054)
chr1 (17-133)||(14351740-14351854)
chr1 (87-132)||(10494262-10494307)
[»] chr5 (8 HSPs)
chr5 (17-132)||(26331927-26332039)
chr5 (17-132)||(40680507-40680618)
chr5 (51-130)||(24867608-24867687)
chr5 (17-100)||(26331585-26331665)
chr5 (47-133)||(42220944-42221030)
chr5 (57-132)||(40600436-40600511)
chr5 (57-130)||(42269357-42269430)
chr5 (64-133)||(12155739-12155808)
[»] chr4 (9 HSPs)
chr4 (51-133)||(12130140-12130222)
chr4 (54-132)||(14440735-14440813)
chr4 (17-129)||(45872652-45872761)
chr4 (17-132)||(56092812-56092924)
chr4 (17-132)||(42678108-42678218)
chr4 (56-133)||(19676903-19676980)
chr4 (66-130)||(52635137-52635201)
chr4 (19-133)||(19676164-19676275)
chr4 (65-133)||(52721850-52721918)
[»] scaffold0083 (1 HSPs)
scaffold0083 (17-125)||(2672-2777)
[»] chr8 (6 HSPs)
chr8 (17-133)||(15050546-15050659)
chr8 (47-133)||(38498865-38498951)
chr8 (55-132)||(10181587-10181664)
chr8 (20-133)||(25142523-25142633)
chr8 (58-133)||(6443322-6443397)
chr8 (55-132)||(39582135-39582211)
[»] chr3 (5 HSPs)
chr3 (47-133)||(52991834-52991920)
chr3 (47-132)||(46743422-46743507)
chr3 (19-132)||(3460949-3461059)
chr3 (47-100)||(54594299-54594352)
chr3 (17-131)||(31625481-31625593)
[»] chr7 (8 HSPs)
chr7 (54-129)||(21591077-21591152)
chr7 (51-133)||(10365417-10365499)
chr7 (47-132)||(32978745-32978828)
chr7 (19-133)||(31038619-31038730)
chr7 (17-132)||(34293916-34294025)
chr7 (17-133)||(43048207-43048320)
chr7 (17-92)||(7437029-7437101)
chr7 (65-133)||(25970000-25970068)
[»] scaffold0974 (1 HSPs)
scaffold0974 (17-133)||(2918-3031)
[»] scaffold0005 (1 HSPs)
scaffold0005 (55-132)||(269590-269667)


Alignment Details
Target: chr6 (Bit Score: 102; Significance: 1e-50; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 17 - 134
Target Start/End: Original strand, 31026778 - 31026894
Alignment:
Q  17 catatatacggcacacttttccttttgtaaatgttgctttttaagtctcctagcctaacattccttatgcttgctaggattcttagtgttttaaataaat 116  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  31026778 catatatacggcacacttttccttt-gtaaatgttgctttttaagtcttctagcctaacatttcttatgcttgctaggattcttagtgttttaaataaat 31026876  T
Q  117 ttcattttaacttcttcg 134  Q
    ||||||||||||||||||    
T  31026877 ttcattttaacttcttcg 31026894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 199 - 298
Target Start/End: Original strand, 31026959 - 31027058
Alignment:
Q  199 aatacattataccagacttggctaaataactggaaaatacaacttgttggatttggaattggattaatatttgcttcaaatattggagtttcttcttctc 298  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31026959 aatacattataccagacttggctaaataactggaaaatacaacttgttggatttggaattggattaatatttgcttcaaatattggagtttcttcttctc 31027058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 74 - 133
Target Start/End: Complemental strand, 9566528 - 9566469
Alignment:
Q  74 acattccttatgcttgctaggattcttagtgttttaaataaatttcattttaacttcttc 133  Q
    ||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  9566528 acattccttgtgcttgctaggattctttgtgttttaaataaatttcattttaacttcttc 9566469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 17 - 133
Target Start/End: Complemental strand, 78518 - 78405
Alignment:
Q  17 catatatacggcacacttttccttttgtaaatgttgctttttaagtctcctagcctaacattccttatgcttgctaggattcttagtgttttaaataaat 116  Q
    |||||||||||| |||||||||||| |||  |||| || |||||||||||||||| | |||| ||| ||||||||||||||||| | ||||| ||||||     
T  78518 catatatacggctcacttttccttt-gta--tgttcctatttaagtctcctagccaagcatttcttgtgcttgctaggattctttgcgttttgaataaac 78422  T
Q  117 ttcattttaacttcttc 133  Q
    ||||||||| |||||||    
T  78421 ttcattttagcttcttc 78405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 17 - 132
Target Start/End: Complemental strand, 11366497 - 11366388
Alignment:
Q  17 catatatacggcacacttttccttttgtaaatgttgctttttaagtctcctagcctaacattccttatgcttgctaggattcttagtgttttaaataaat 116  Q
    ||||||||||| ||||||||||||| |||  ||||||| |||||||||  |||  || ||||||||||||||||||  |||||  |||||||||||||||    
T  11366497 catatatacgg-acacttttccttt-gta--tgttgctctttaagtcttttaggttagcattccttatgcttgctaaaattct--gtgttttaaataaat 11366404  T
Q  117 ttcattttaacttctt 132  Q
    ||||||||||||||||    
T  11366403 ttcattttaacttctt 11366388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 239 - 291
Target Start/End: Original strand, 31069880 - 31069932
Alignment:
Q  239 aacttgttggatttggaattggattaatatttgcttcaaatattggagtttct 291  Q
    |||||||||||||||||||||||||| ||||||||||| ||||||||||||||    
T  31069880 aacttgttggatttggaattggattagtatttgcttcagatattggagtttct 31069932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 236 - 295
Target Start/End: Original strand, 31080519 - 31080578
Alignment:
Q  236 tacaacttgttggatttggaattggattaatatttgcttcaaatattggagtttcttctt 295  Q
    |||| |||||||||||||||||||||| | | ||| ||||||| ||||||||||||||||    
T  31080519 tacagcttgttggatttggaattggatgattgtttccttcaaaaattggagtttcttctt 31080578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 19 - 133
Target Start/End: Original strand, 32748050 - 32748161
Alignment:
Q  19 tatatacggcacacttttccttttgtaaatgttgctttttaagtctcctagcctaacattccttatgcttgctaggattcttagtgttttaaataaattt 118  Q
    |||| |||||||||| ||||||| |||  ||||||| ||||||| || ||||||| |||||||| |||| | || |||||||    |||| |||||||||    
T  32748050 tatacacggcacactattccttt-gta--tgttgctatttaagtatcttagcctagcattccttgtgctagatatgattctttacattttgaataaattt 32748146  T
Q  119 cattttaacttcttc 133  Q
    |||||||||||||||    
T  32748147 cattttaacttcttc 32748161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 239 - 298
Target Start/End: Original strand, 31035393 - 31035452
Alignment:
Q  239 aacttgttggatttggaattggattaatatttgcttcaaatattggagtttcttcttctc 298  Q
    ||||||||||||||||||||| |||| ||||| |||   || ||||||||||||||||||    
T  31035393 aacttgttggatttggaattgaattagtatttcctttggattttggagtttcttcttctc 31035452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 17 - 132
Target Start/End: Original strand, 10670507 - 10670618
Alignment:
Q  17 catatatacggcacacttttccttttgtaaatgttgctttttaagtctcctagcctaacattccttatgcttgctaggattcttagtgttttaaataaat 116  Q
    |||||||||| || ||||||||||| |||  ||||| ||||||||||||||| | || |||| ||| |||||  ||| |||||  | |||||||||||||    
T  10670507 catatatacgacaaacttttccttt-gta--tgttgttttttaagtctcctaacttagcattacttgtgcttattagaattct--gggttttaaataaat 10670601  T
Q  117 tt-cattttaacttctt 132  Q
    || ||||||||||||||    
T  10670602 ttccattttaacttctt 10670618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 60 - 133
Target Start/End: Complemental strand, 10772456 - 10772383
Alignment:
Q  60 agtctcctagcctaacattccttatgcttgctaggattcttagtgttttaaataaatttcattttaacttcttc 133  Q
    |||||||||||| | |||||||| ||||||| |||||  || | ||||| ||| || |||||||||||||||||    
T  10772456 agtctcctagccaagcattccttgtgcttgcaaggatattttgcgttttgaattaacttcattttaacttcttc 10772383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 238 - 283
Target Start/End: Original strand, 31045854 - 31045899
Alignment:
Q  238 caacttgttggatttggaattggattaatatttgcttcaaatattg 283  Q
    ||||||||||||||||||||||||||| ||||| ||| | ||||||    
T  31045854 caacttgttggatttggaattggattagtatttcctttatatattg 31045899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 241 - 293
Target Start/End: Original strand, 31110415 - 31110467
Alignment:
Q  241 cttgttggatttggaattggattaatatttgcttcaaatattggagtttcttc 293  Q
    ||||||||||||||||||| |||| ||||| ||| | |||||||||| |||||    
T  31110415 cttgttggatttggaattgaattagtatttcctttagatattggagtatcttc 31110467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 70; Significance: 1e-31; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 17 - 133
Target Start/End: Complemental strand, 6705252 - 6705140
Alignment:
Q  17 catatatacggcacacttttccttttgtaaatgttgctttttaagtctcctagcctaacattccttatgcttgctaggattcttagtgttttaaataaat 116  Q
    |||||||||| |||||||||||||| |||  ||||| |||||||||||||||||||| ||||||||||||||||| ||| ||||||||||||||||||||    
T  6705252 catatatacgacacacttttccttt-gta--tgttgttttttaagtctcctagcctagcattccttatgcttgctggga-tcttagtgttttaaataaat 6705157  T
Q  117 ttcattttaacttcttc 133  Q
    ||||||||| |||||||    
T  6705156 ttcattttagcttcttc 6705140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 17 - 133
Target Start/End: Complemental strand, 40899862 - 40899749
Alignment:
Q  17 catatatacggcacacttttccttttgtaaatgttgctttttaagtctcctagcctaacattccttatgcttgctaggattcttagtgttttaaataaat 116  Q
    |||||||||| |||||||||||||| |||  ||||| ||||||||| || ||| ||| |||||||| ||||||||||| ||||| |||||||||||||||    
T  40899862 catatatacgacacacttttccttt-gta--tgttgttttttaagtatcatagtctagcattccttgtgcttgctagggttctttgtgttttaaataaat 40899766  T
Q  117 ttcattttaacttcttc 133  Q
    || ||||||||||||||    
T  40899765 tttattttaacttcttc 40899749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 17 - 132
Target Start/End: Complemental strand, 27888410 - 27888299
Alignment:
Q  17 catatatacggcacacttttccttttgtaaatgttgctttttaagtctcctagcctaacattccttatgcttgctaggattcttagtgttttaaataaat 116  Q
    ||||||||||| ||||||||||||| |||  ||||||| ||||| ||||||||  || ||||| || |||||||||||||||||  ||||||||||||||    
T  27888410 catatatacgg-acacttttccttt-gta--tgttgctctttaattctcctagtttagcattcgttgtgcttgctaggattctttatgttttaaataaat 27888315  T
Q  117 ttcattttaacttctt 132  Q
    |||||||||| |||||    
T  27888314 ttcattttaatttctt 27888299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 23 - 132
Target Start/End: Complemental strand, 33544033 - 33543927
Alignment:
Q  23 tacggcacacttttccttttgtaaatgttgctttttaagtctcctagcctaacattccttatgcttgctaggattcttagtgttttaaataaatttcatt 122  Q
    |||| |||||||||| |||||||  ||||| | ||||||||||||| | ||  ||| || ||||| | ||||||||||  |||||| |||||||||||||    
T  33544033 tacgacacacttttc-ttttgta--tgttgttatttaagtctcctaacttagtatttctcatgctagttaggattctttctgttttgaataaatttcatt 33543937  T
Q  123 ttaacttctt 132  Q
    ||||||||||    
T  33543936 ttaacttctt 33543927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 19 - 132
Target Start/End: Original strand, 28165415 - 28165525
Alignment:
Q  19 tatatacggcacacttttccttttgtaaatgttgctttttaagtctcctagcctaacattccttatgcttgctaggattcttagtgttttaaataaattt 118  Q
    |||||||| |||||||||||||   || |||||||| ||||||| || ||||||| |||||||| |||| | || |||| ||   ||||| ||||||||     
T  28165415 tatatacgacacacttttcctt---tatatgttgctatttaagtatcttagcctagcattccttgtgctagataagattatttacgttttgaataaattc 28165511  T
Q  119 cattttaacttctt 132  Q
    ||||||| ||||||    
T  28165512 cattttatcttctt 28165525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 75 - 133
Target Start/End: Original strand, 14951453 - 14951511
Alignment:
Q  75 cattccttatgcttgctaggattcttagtgttttaaataaatttcattttaacttcttc 133  Q
    |||||||| |||| ||| ||||| || | ||||| ||||||||||||||||||||||||    
T  14951453 cattccttgtgctcgctgggattgtttgcgttttgaataaatttcattttaacttcttc 14951511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 56 - 133
Target Start/End: Original strand, 38531955 - 38532033
Alignment:
Q  56 tttaagtctcctagcctaacattccttatgcttgctaggattcttagtgttttaaataaattt-cattttaacttcttc 133  Q
    |||||| ||||||| ||| | |||||| |||| ||||||||| || | ||||| ||||||||| |||||||||||||||    
T  38531955 tttaagactcctagtctagcgttccttgtgctcgctaggattatttgcgttttgaataaattttcattttaacttcttc 38532033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 91 - 132
Target Start/End: Complemental strand, 1532867 - 1532826
Alignment:
Q  91 taggattcttagtgttttaaataaatttcattttaacttctt 132  Q
    |||||||||| |||||| ||||||||||||||||| ||||||    
T  1532867 taggattctttgtgtttgaaataaatttcattttaccttctt 1532826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 64 - 132
Target Start/End: Original strand, 6186865 - 6186933
Alignment:
Q  64 tcctagcctaacattccttatgcttgctaggattcttagtgttttaaataaatttcattttaacttctt 132  Q
    |||||| ||| |||| ||| |||| |||||||||||| |  |||| |||||||||||||||| ||||||    
T  6186865 tcctagtctagcattgcttgtgctcgctaggattctttgcattttgaataaatttcattttagcttctt 6186933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 70; Significance: 1e-31; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 17 - 133
Target Start/End: Complemental strand, 15495620 - 15495507
Alignment:
Q  17 catatatacggcacacttttccttttgtaaatgttgctttttaagtctcctagcctaacattccttatgcttgctaggattcttagtgttttaaataaat 116  Q
    |||||||| |||||||||||||||| |||  |||||||||||||||||||||||||| |||| ||| ||| ||||| |||||||||||||||||||||||    
T  15495620 catatataaggcacacttttccttt-gta--tgttgctttttaagtctcctagcctagcatttcttgtgcatgctatgattcttagtgttttaaataaat 15495524  T
Q  117 ttcattttaacttcttc 133  Q
    ||||||||| |||||||    
T  15495523 ttcattttagcttcttc 15495507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 47 - 132
Target Start/End: Complemental strand, 29099148 - 29099063
Alignment:
Q  47 atgttgctttttaagtctcctagcctaacattccttatgcttgctaggattcttagtgttttaaataaatttcattttaacttctt 132  Q
    |||||| |||||||||||||||||||| | |||||| ||||||||||||||||| |||||||||||||||||||||||||||||||    
T  29099148 atgttgttttttaagtctcctagcctagcgttccttgtgcttgctaggattctttgtgttttaaataaatttcattttaacttctt 29099063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 47 - 133
Target Start/End: Complemental strand, 26842784 - 26842700
Alignment:
Q  47 atgttgctttttaagtctcctagcctaacattccttatgcttgctaggattcttagtgttttaaataaatttcattttaacttcttc 133  Q
    |||||||||||||||||||||| |||| |||||||| ||||||||||||||||  |||||||||||||||||||||||| |||||||    
T  26842784 atgttgctttttaagtctcctaacctagcattccttgtgcttgctaggattct--gtgttttaaataaatttcattttagcttcttc 26842700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 47 - 132
Target Start/End: Complemental strand, 47896435 - 47896349
Alignment:
Q  47 atgttgct-ttttaagtctcctagcctaacattccttatgcttgctaggattcttagtgttttaaataaatttcattttaacttctt 132  Q
    |||||||| |||||||||| ||| | ||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||    
T  47896435 atgttgctcttttaagtcttctaacttaacattccttatgcttgctaggattctttgtattttaaataaatttcattttaacttctt 47896349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 17 - 132
Target Start/End: Complemental strand, 10494431 - 10494319
Alignment:
Q  17 catatatacggcacacttttccttttgtaaatgttgctttttaagtctcctagcctaacattccttatgcttgctaggattcttagtgttttaaataaat 116  Q
    |||||||||  |||||||||||||| |||  ||||||| ||||||||||||||||  ||||||||| ||||||||||||||||| | ||||| |||||||    
T  10494431 catatatacaacacacttttccttt-gta--tgttgctatttaagtctcctagccagacattccttgtgcttgctaggattctttgcgttttgaataaat 10494335  T
Q  117 ttcattttaacttctt 132  Q
    ||||||||| ||||||    
T  10494334 ttcattttagcttctt 10494319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 47 - 133
Target Start/End: Original strand, 4654204 - 4654290
Alignment:
Q  47 atgttgctttttaagtctcctagcctaacattccttatgcttgctaggattcttagtgttttaaataaatttcattttaacttcttc 133  Q
    |||||||| ||||||||| ||||| || |||||| | ||||||||||||||||| ||||||||||||| |||||||||| |||||||    
T  4654204 atgttgctctttaagtcttctagcttagcattccctgtgcttgctaggattctttgtgttttaaataattttcattttagcttcttc 4654290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 55 - 133
Target Start/End: Original strand, 40581094 - 40581172
Alignment:
Q  55 ttttaagtctcctagcctaacattccttatgcttgctaggattcttagtgttttaaataaatttcattttaacttcttc 133  Q
    |||||||||| ||||| || |||||||| ||||||||| ||||||| |||||||||||||||||||||||| |||||||    
T  40581094 ttttaagtcttctagcttagcattccttgtgcttgctaagattctttgtgttttaaataaatttcattttagcttcttc 40581172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 47 - 132
Target Start/End: Original strand, 27787275 - 27787360
Alignment:
Q  47 atgttgctttttaagtctcctagcctaacattccttatgcttgctaggattcttagtgttttaaataaatttcattttaacttctt 132  Q
    |||||| | ||||||||||||||| || |||||||| ||||||||| ||||||| ||| |||||||||||||||||||| ||||||    
T  27787275 atgttgttctttaagtctcctagcttagcattccttgtgcttgctaagattctttgtgctttaaataaatttcattttagcttctt 27787360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 56 - 132
Target Start/End: Complemental strand, 8038940 - 8038864
Alignment:
Q  56 tttaagtctcctagcctaacattccttatgcttgctaggattcttagtgttttaaataaatttcattttaacttctt 132  Q
    ||||||||| ||||| || |||||||| |||||||||||||| || |||||||||||||||||||||||| ||||||    
T  8038940 tttaagtcttctagcttagcattccttgtgcttgctaggattttttgtgttttaaataaatttcattttagcttctt 8038864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 47 - 125
Target Start/End: Complemental strand, 11814257 - 11814179
Alignment:
Q  47 atgttgctttttaagtctcctagcctaacattccttatgcttgctaggattcttagtgttttaaataaatttcatttta 125  Q
    |||||||| |||||||||||||||| | | |||||| |||||| |||||||||| | ||||| ||||||||||||||||    
T  11814257 atgttgctatttaagtctcctagccaagctttccttctgcttgttaggattctttgcgttttgaataaatttcatttta 11814179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 17 - 132
Target Start/End: Complemental strand, 25537348 - 25537235
Alignment:
Q  17 catatatacggcacacttttccttttgtaaatgttg-ctttttaagtctcctagcctaacattccttatgcttgctaggattcttagtgttttaaataaa 115  Q
    |||||||||| |||||||||||   |||  ||||||  |||||||||||||||||||| ||||| || ||||||||||||||||| |  | |||||||||    
T  25537348 catatatacgacacacttttcc---tgtgtatgttgtttttttaagtctcctagcctagcattctttgtgcttgctaggattctttgcatgttaaataaa 25537252  T
Q  116 tttcattttaacttctt 132  Q
    | |||||||| ||||||    
T  25537251 tatcattttagcttctt 25537235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 57 - 132
Target Start/End: Original strand, 2077979 - 2078054
Alignment:
Q  57 ttaagtctcctagcctaacattccttatgcttgctaggattcttagtgttttaaataaatttcattttaacttctt 132  Q
    ||||||||||||||| | ||||||||||| |||||||||||||| |  |||| |||||| ||||||||| ||||||    
T  2077979 ttaagtctcctagccaagcattccttatgtttgctaggattctttgcattttgaataaacttcattttaccttctt 2078054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 17 - 133
Target Start/End: Original strand, 14351740 - 14351854
Alignment:
Q  17 catatatacggcacacttttccttttgtaaatgttgctt-tttaagtctcctagcctaacattccttatgcttgctaggattcttagtgttttaaataaa 115  Q
    |||||||||| |||||||||||||| |||  |||||||  ||||||  |||||| ||| |||||||| |||| |||||||||||| |  |||| ||||||    
T  14351740 catatatacgacacacttttccttt-gta--tgttgctactttaagattcctagtctagcattccttgtgctcgctaggattctttgcattttgaataaa 14351836  T
Q  116 tttcattttaacttcttc 133  Q
    |||||||||| |||||||    
T  14351837 tttcattttagcttcttc 14351854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 87 - 132
Target Start/End: Complemental strand, 10494307 - 10494262
Alignment:
Q  87 ttgctaggattcttagtgttttaaataaatttcattttaacttctt 132  Q
    ||||||| |||||| ||||||| |||||||||||||||| ||||||    
T  10494307 ttgctagaattctttgtgttttgaataaatttcattttaccttctt 10494262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 65; Significance: 1e-28; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 17 - 132
Target Start/End: Original strand, 26331927 - 26332039
Alignment:
Q  17 catatatacggcacacttttccttttgtaaatgttgctttttaagtctcctagcctaacattccttatgcttgctaggattcttagtgttttaaataaat 116  Q
    ||||||||||  ||||||||||||| |||  ||||||||||||| |||||||||||| |||||||| ||||||||||||||||   ||||||||||||||    
T  26331927 catatatacgaaacacttttccttt-gta--tgttgctttttaaatctcctagcctagcattccttgtgcttgctaggattctatttgttttaaataaat 26332023  T
Q  117 ttcattttaacttctt 132  Q
    ||||||||||||||||    
T  26332024 ttcattttaacttctt 26332039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 17 - 132
Target Start/End: Complemental strand, 40680618 - 40680507
Alignment:
Q  17 catatatacggcacacttttccttttgtaaatgttgctttttaagtctcctagcctaacattccttatgcttgctaggattcttagtgttttaaataaat 116  Q
    ||||||||||||||||||||||||| |||  |||||||||||||||||| || |||| |||||||| |||||||||| || |||||||||||||||||||    
T  40680618 catatatacggcacacttttccttt-gta--tgttgctttttaagtctcttaacctagcattccttgtgcttgctagaat-cttagtgttttaaataaat 40680523  T
Q  117 ttcattttaacttctt 132  Q
    ||||||||| ||||||    
T  40680522 ttcattttaccttctt 40680507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 51 - 130
Target Start/End: Original strand, 24867608 - 24867687
Alignment:
Q  51 tgctttttaagtctcctagcctaacattccttatgcttgctaggattcttagtgttttaaataaatttcattttaacttc 130  Q
    |||||||||||||| ||| |||| |||||||| |||||||||| |||||| |||||||||||||||||||||||||||||    
T  24867608 tgctttttaagtcttctaacctatcattccttgtgcttgctagtattctttgtgttttaaataaatttcattttaacttc 24867687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 17 - 100
Target Start/End: Original strand, 26331585 - 26331665
Alignment:
Q  17 catatatacggcacacttttccttttgtaaatgttgctttttaagtctcctagcctaacattccttatgcttgctaggattctt 100  Q
    ||||||||||  ||||||||||||| |||  ||||||||||||| |||||||||||| |||||||| |||||||||||||||||    
T  26331585 catatatacgaaacacttttccttt-gta--tgttgctttttaaatctcctagcctagcattccttgtgcttgctaggattctt 26331665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 47 - 133
Target Start/End: Complemental strand, 42221030 - 42220944
Alignment:
Q  47 atgttgctttttaagtctcctagcctaacattccttatgcttgctaggattcttagtgttttaaataaatttcattttaacttcttc 133  Q
    |||||||| |||||||||||||||||| | |||||  |||| |||||||||||| | ||||| ||| |||||||||||| |||||||    
T  42221030 atgttgctatttaagtctcctagcctagccttcctcgtgctagctaggattctttgcgttttgaattaatttcattttagcttcttc 42220944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 57 - 132
Target Start/End: Original strand, 40600436 - 40600511
Alignment:
Q  57 ttaagtctcctagcctaacattccttatgcttgctaggattcttagtgttttaaataaatttcattttaacttctt 132  Q
    |||||||||||| || ||||||||||||| |||||||||||||| | ||||| |||||| || |||||| ||||||    
T  40600436 ttaagtctcctaaccaaacattccttatgtttgctaggattctttgcgttttgaataaactttattttagcttctt 40600511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 57 - 130
Target Start/End: Original strand, 42269357 - 42269430
Alignment:
Q  57 ttaagtctcctagcctaacattccttatgcttgctaggattcttagtgttttaaataaatttcattttaacttc 130  Q
    ||||||||||||||  | |||||||||||||||||| ||||||| | ||||| |||||| ||||||||| ||||    
T  42269357 ttaagtctcctagctaagcattccttatgcttgctaagattctttgcgttttgaataaacttcattttagcttc 42269430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 64 - 133
Target Start/End: Complemental strand, 12155808 - 12155739
Alignment:
Q  64 tcctagcctaacattccttatgcttgctaggattcttagtgttttaaataaatttcattttaacttcttc 133  Q
    |||||| ||| |||||||| || | |||||||||||| |  |||| |||||||||||||||| |||||||    
T  12155808 tcctagtctagcattccttgtgatcgctaggattctttgcattttgaataaatttcattttagcttcttc 12155739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 63; Significance: 2e-27; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 51 - 133
Target Start/End: Complemental strand, 12130222 - 12130140
Alignment:
Q  51 tgctttttaagtctcctagcctaacattccttatgcttgctaggattcttagtgttttaaataaatttcattttaacttcttc 133  Q
    ||||||||||||||||||||||| |||||||| ||| |||||||||||||||||||||||||| ||||||||||| |||||||    
T  12130222 tgctttttaagtctcctagcctagcattccttctgcatgctaggattcttagtgttttaaatagatttcattttagcttcttc 12130140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 54 - 132
Target Start/End: Complemental strand, 14440813 - 14440735
Alignment:
Q  54 tttttaagtctcctagcctaacattccttatgcttgctaggattcttagtgttttaaataaatttcattttaacttctt 132  Q
    |||||||||||||||| |||||||| ||| |||||| ||||||||||||||||||||||||||||||||||| ||||||    
T  14440813 tttttaagtctcctagtctaacatttcttgtgcttgttaggattcttagtgttttaaataaatttcattttagcttctt 14440735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 17 - 129
Target Start/End: Complemental strand, 45872761 - 45872652
Alignment:
Q  17 catatatacggcacacttttccttttgtaaatgttgctttttaagtctcctagcctaacattccttatgcttgctaggattcttagtgttttaaataaat 116  Q
    ||||||||||| |||||||| |||| |||  ||||| |||||||||||| |||||||  ||||||| |||||||||||||| |  |||||||||||||||    
T  45872761 catatatacggaacactttttcttt-gta--tgttgttttttaagtctcatagcctagtattccttgtgcttgctaggattatatgtgttttaaataaat 45872665  T
Q  117 ttcattttaactt 129  Q
    |||||||||||||    
T  45872664 ttcattttaactt 45872652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 17 - 132
Target Start/End: Original strand, 56092812 - 56092924
Alignment:
Q  17 catatatacggcacacttttccttttgtaaatgttgctttttaagtctcctagcctaacattccttatgcttgctaggattcttagtgttttaaataaat 116  Q
    |||||||||| ||||||||||||   ||  || ||| ||||||| |||||||||||| |||||||| ||||||||||||||||| |  | ||||||||||    
T  56092812 catatatacgacacacttttcct---gtgtatattgttttttaattctcctagcctagcattccttgtgcttgctaggattctttgcatgttaaataaat 56092908  T
Q  117 ttcattttaacttctt 132  Q
    ||||||||| ||||||    
T  56092909 ttcattttagcttctt 56092924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 17 - 132
Target Start/End: Original strand, 42678108 - 42678218
Alignment:
Q  17 catatatacggcacacttttccttttgtaaatgttgctttttaagtctcctagcctaacattccttatgcttgctaggattcttagtgttttaaataaat 116  Q
    ||||||||||  ||||||||||||||    ||||| ||||||||||||||||||||| |||| ||  ||||||||||||||||   ||||||||| ||||    
T  42678108 catatatacgagacacttttccttttt---atgttactttttaagtctcctagcctagcatttctcgtgcttgctaggattct--ctgttttaaacaaat 42678202  T
Q  117 ttcattttaacttctt 132  Q
    | ||||||||||||||    
T  42678203 tccattttaacttctt 42678218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 56 - 133
Target Start/End: Original strand, 19676903 - 19676980
Alignment:
Q  56 tttaagtctcctagcctaacattccttatgcttgctaggattcttagtgttttaaataaatttcattttaacttcttc 133  Q
    ||||||| || |||||||||||||||| |||| | ||||||||||   ||||| |||||||| |||||||||||||||    
T  19676903 tttaagtatcttagcctaacattccttgtgctagataggattctttacgttttgaataaattccattttaacttcttc 19676980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 66 - 130
Target Start/End: Complemental strand, 52635201 - 52635137
Alignment:
Q  66 ctagcctaacattccttatgcttgctaggattcttagtgttttaaataaatttcattttaacttc 130  Q
    |||| ||| ||||||||||||| |||||| ||||| | ||||| |||||||||||||||||||||    
T  52635201 ctagtctagcattccttatgctcgctagggttctttgcgttttgaataaatttcattttaacttc 52635137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 19 - 133
Target Start/End: Original strand, 19676164 - 19676275
Alignment:
Q  19 tatatacggcacacttttccttttgtaaatgttgctttttaagtctcctagcctaacattccttatgcttgctaggattcttagtgttttaaataaattt 118  Q
    ||||| ||||||||||||  |||||||  ||||||| ||||||| |  |||||||||||||||| |||| | ||||||||||   ||||| ||| ||||     
T  19676164 tatattcggcacacttttt-ttttgta--tgttgctatttaagtattttagcctaacattccttgtgctagataggattctttacgttttgaatcaattc 19676260  T
Q  119 cattttaacttcttc 133  Q
    |||||||||||||||    
T  19676261 cattttaacttcttc 19676275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 65 - 133
Target Start/End: Original strand, 52721850 - 52721918
Alignment:
Q  65 cctagcctaacattccttatgcttgctaggattcttagtgttttaaataaatttcattttaacttcttc 133  Q
    ||||| ||| |||||||| |||| | |||||||| | ||| ||| |||||||||||||||| |||||||    
T  52721850 cctagtctagcattccttgtgctggttaggattcattgtgattttaataaatttcattttagcttcttc 52721918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0083 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: scaffold0083
Description:

Target: scaffold0083; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 17 - 125
Target Start/End: Complemental strand, 2777 - 2672
Alignment:
Q  17 catatatacggcacacttttccttttgtaaatgttgctttttaagtctcctagcctaacattccttatgcttgctaggattcttagtgttttaaataaat 116  Q
    ||||||||||||||||||||||||| |||  |||||||| ||||||||||||| ||| |||||||| ||||||||||||||||| | ||||| ||||| |    
T  2777 catatatacggcacacttttccttt-gta--tgttgcttgttaagtctcctagtctagcattccttgtgcttgctaggattctttgcgttttgaataagt 2681  T
Q  117 ttcatttta 125  Q
    |||||||||    
T  2680 ttcatttta 2672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 55; Significance: 1e-22; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 17 - 133
Target Start/End: Original strand, 15050546 - 15050659
Alignment:
Q  17 catatatacggcacacttttccttttgtaaatgttgctttttaagtctcctagcctaacattccttatgcttgctaggattcttagtgttttaaataaat 116  Q
    |||||||||||||||||||||||   ||  |||||| ||||||| |||||||||||| |||||||| |||||||||| |||||| |  | ||||||||||    
T  15050546 catatatacggcacacttttcct---gtgtatgttgttttttaattctcctagcctagcattccttgtgcttgctagaattctttgcatgttaaataaat 15050642  T
Q  117 ttcattttaacttcttc 133  Q
    ||||||||| |||||||    
T  15050643 ttcattttagcttcttc 15050659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 47 - 133
Target Start/End: Complemental strand, 38498951 - 38498865
Alignment:
Q  47 atgttgctttttaagtctcctagcctaacattccttatgcttgctaggattcttagtgttttaaataaatttcattttaacttcttc 133  Q
    |||||||| |||||||||  | || ||||||||| | ||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  38498951 atgttgctctttaagtcttatggcttaacattccctgtgcttgctaggattctttgtgttttaaataaatttcattttaacttcttc 38498865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 55 - 132
Target Start/End: Complemental strand, 10181664 - 10181587
Alignment:
Q  55 ttttaagtctcctagcctaacattccttatgcttgctaggattcttagtgttttaaataaatttcattttaacttctt 132  Q
    ||||||||||| |||| ||||||| ||||| |||| |||||||||| ||||||| |||||||||||||||| ||||||    
T  10181664 ttttaagtctcttagcttaacatttcttatacttgttaggattctttgtgttttcaataaatttcattttagcttctt 10181587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 20 - 133
Target Start/End: Complemental strand, 25142633 - 25142523
Alignment:
Q  20 atatacggcacacttttccttttgtaaatgttgctttttaagtctcctagcctaacattccttatgcttgctaggattcttagtgttttaaataaatttc 119  Q
    ||||||| ||||||||||||||  |   ||||| | ||||||| || ||| ||| ||||||||||||| | || |||||||  |||||| ||||||||||    
T  25142633 atatacgacacacttttcctttgtt---tgttgttatttaagtatcttagtctagcattccttatgctagataagattctttatgttttgaataaatttc 25142537  T
Q  120 attttaacttcttc 133  Q
    |||||| |||||||    
T  25142536 attttagcttcttc 25142523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 58 - 133
Target Start/End: Complemental strand, 6443397 - 6443322
Alignment:
Q  58 taagtctcctagcctaacattccttatgcttgctaggattcttagtgttttaaataaatttcattttaacttcttc 133  Q
    |||| ||||||||||| || ||||| |||| | |||||||| | ||| ||| |||||||||||||||| |||||||    
T  6443397 taagactcctagcctagcactccttgtgctggttaggattcattgtgattttaataaatttcattttagcttcttc 6443322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 55 - 132
Target Start/End: Original strand, 39582135 - 39582211
Alignment:
Q  55 ttttaagtctcctagcctaacattccttatgcttgctaggattcttagtgttttaaataaatttcattttaacttctt 132  Q
    ||||||||||| ||||||| ||||| || |||||| ||||||| |  || |||||||||||||| |||||| ||||||    
T  39582135 ttttaagtctcatagcctagcattctttgtgcttgttaggattgtgtgt-ttttaaataaattttattttagcttctt 39582211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 55; Significance: 1e-22; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 47 - 133
Target Start/End: Original strand, 52991834 - 52991920
Alignment:
Q  47 atgttgctttttaagtctcctagcctaacattccttatgcttgctaggattcttagtgttttaaataaatttcattttaacttcttc 133  Q
    |||||| ||||||||||||||| |||| |||| ||| || |||||||||||||| |||||||||||||||||||||||| |||||||    
T  52991834 atgttgttttttaagtctcctaacctagcatttcttgtgtttgctaggattctttgtgttttaaataaatttcattttagcttcttc 52991920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 47 - 132
Target Start/End: Original strand, 46743422 - 46743507
Alignment:
Q  47 atgttgctttttaagtctcctagcctaacattccttatgcttgctaggattcttagtgttttaaataaatttcattttaacttctt 132  Q
    |||||||| ||||| ||||||| | || |||||||| ||||||||||||||||| |||||||||||||||||||||||| ||||||    
T  46743422 atgttgctctttaaatctcctaacttagcattccttgtgcttgctaggattctttgtgttttaaataaatttcattttaccttctt 46743507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 19 - 132
Target Start/End: Original strand, 3460949 - 3461059
Alignment:
Q  19 tatatacggcacacttttccttttgtaaatgttgctttttaagtctcctagcctaacattccttatgcttgctaggattcttagtgttttaaataaattt 118  Q
    ||||||||| ||||||||||||| |||  ||||||| ||||||||| |||||||| |||||||  |||| | ||||||||||   ||||| |||||||||    
T  3460949 tatatacggtacacttttccttt-gta--tgttgctatttaagtcttctagcctagcattcctcgtgctagttaggattctttacgttttgaataaattt 3461045  T
Q  119 cattttaacttctt 132  Q
    ||||||||||||||    
T  3461046 cattttaacttctt 3461059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 47 - 100
Target Start/End: Original strand, 54594299 - 54594352
Alignment:
Q  47 atgttgctttttaagtctcctagcctaacattccttatgcttgctaggattctt 100  Q
    ||||||||||||||||||||||| ||| |||||||||| |||||||||||||||    
T  54594299 atgttgctttttaagtctcctagtctagcattccttattcttgctaggattctt 54594352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 17 - 131
Target Start/End: Complemental strand, 31625593 - 31625481
Alignment:
Q  17 catatatacggcacacttttccttttgtaaatgttgcttt-ttaagtctcctagcctaacattccttatgcttgctaggattcttagtgttttaaataaa 115  Q
    |||||||||| |||||||||||||| |||  ||||||| | ||||  ||||||| |||  ||||||| |||| |||| ||||||| | ||||| ||||||    
T  31625593 catatatacgacacacttttccttt-gta--tgttgctatattaaaactcctagtctagtattccttgtgctcgctatgattctttgcgttttgaataaa 31625497  T
Q  116 tttcattttaacttct 131  Q
    ||||||||||||||||    
T  31625496 tttcattttaacttct 31625481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 52; Significance: 8e-21; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 54 - 129
Target Start/End: Original strand, 21591077 - 21591152
Alignment:
Q  54 tttttaagtctcctagcctaacattccttatgcttgctaggattcttagtgttttaaataaatttcattttaactt 129  Q
    ||||||||||||||| | || |||||||| |||||||||| |||||| ||||||||||||||||||||||||||||    
T  21591077 tttttaagtctcctaacttagcattccttgtgcttgctagaattctttgtgttttaaataaatttcattttaactt 21591152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 51 - 133
Target Start/End: Complemental strand, 10365499 - 10365417
Alignment:
Q  51 tgctttttaagtctcctagcctaacattccttatgcttgctaggattcttagtgttttaaataaatttcattttaacttcttc 133  Q
    |||| ||||||||| ||||| || ||||| || ||||||||||||||||| |||||||||||||||||||||||| |||||||    
T  10365499 tgctctttaagtcttctagcttagcattctttgtgcttgctaggattctttgtgttttaaataaatttcattttagcttcttc 10365417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 47 - 132
Target Start/End: Complemental strand, 32978828 - 32978745
Alignment:
Q  47 atgttgctttttaagtctcctagcctaacattccttatgcttgctaggattcttagtgttttaaataaatttcattttaacttctt 132  Q
    ||||| || |||||||||| |||| ||| ||||||||||||||||||||||||  ||||||||| |||||||||||||||||||||    
T  32978828 atgttactctttaagtctcatagcttaatattccttatgcttgctaggattct--gtgttttaattaaatttcattttaacttctt 32978745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 19 - 133
Target Start/End: Complemental strand, 31038730 - 31038619
Alignment:
Q  19 tatatacggcacacttttccttttgtaaatgttgctttttaagtctcctagcctaacattccttatgcttgctaggattcttagtgttttaaataaattt 118  Q
    |||||||| |||||||||||||| |||  ||||||| ||||||| || ||||||| |||||||| |||| | || |||||||   |||||||||||||||    
T  31038730 tatatacgacacacttttccttt-gta--tgttgctatttaagtatcttagcctagcattccttgtgctagataagattctttacgttttaaataaattt 31038634  T
Q  119 cattttaacttcttc 133  Q
    ||||||| |||||||    
T  31038633 cattttagcttcttc 31038619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 17 - 132
Target Start/End: Original strand, 34293916 - 34294025
Alignment:
Q  17 catatatacggcacacttttccttttgtaaatgttgctttttaagtctcctagcctaacattccttatgcttgctaggattcttagtgttttaaataaat 116  Q
    ||||||||||| ||||||||||||| |||  || |||| ||| ||||| ||||| |||||||  || ||||||||||||||||  |||||||||||||||    
T  34293916 catatatacgg-acacttttccttt-gta--tggtgctctttcagtcttctagcttaacattttttgtgcttgctaggattct--gtgttttaaataaat 34294009  T
Q  117 ttcattttaacttctt 132  Q
    ||||||||| ||||||    
T  34294010 ttcattttagcttctt 34294025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 17 - 133
Target Start/End: Original strand, 43048207 - 43048320
Alignment:
Q  17 catatatacggcacacttttccttttgtaaatgttgctttttaagtctcctagcctaacattccttatgcttgctaggattcttagtgttttaaataaat 116  Q
    |||||||||| |||| ||||||||| |||  |||| ||  |||||||||||| || | |||||||| || ||| ||||||||||  | |||| ||||||     
T  43048207 catatatacgacacatttttccttt-gta--tgttcctacttaagtctcctaaccaagcattccttgtgtttgttaggattctttatattttgaataaac 43048303  T
Q  117 ttcattttaacttcttc 133  Q
    |||||||||||||||||    
T  43048304 ttcattttaacttcttc 43048320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 17 - 92
Target Start/End: Complemental strand, 7437101 - 7437029
Alignment:
Q  17 catatatacggcacacttttccttttgtaaatgttgctttttaagtctcctagcctaacattccttatgcttgcta 92  Q
    ||||||||||| |||||||| |||| |||  ||||||| |||||||||||||||||| || |||| ||||| ||||    
T  7437101 catatatacggtacactttttcttt-gta--tgttgctatttaagtctcctagcctagcaatcctcatgctagcta 7437029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 65 - 133
Target Start/End: Original strand, 25970000 - 25970068
Alignment:
Q  65 cctagcctaacattccttatgcttgctaggattcttagtgttttaaataaatttcattttaacttcttc 133  Q
    ||||| ||| |||||||| |||| | |||||||  | ||| ||| ||||||||||||||||||||||||    
T  25970000 cctagtctagcattccttgtgctggttaggattaattgtgattttaataaatttcattttaacttcttc 25970068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0974 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: scaffold0974
Description:

Target: scaffold0974; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 17 - 133
Target Start/End: Original strand, 2918 - 3031
Alignment:
Q  17 catatatacggcacacttttccttttgtaaatgttgctttttaagtctcctagcctaacattccttatgcttgctaggattcttagtgttttaaataaat 116  Q
    |||||||||| |||||||||| |||   | ||||| ||  ||||||||||||||| |||||||||| ||||||||||||||||| || |||||||||||     
T  2918 catatatacgacacacttttctttt---atatgttcctacttaagtctcctagccaaacattccttgtgcttgctaggattctttgtcttttaaataaac 3014  T
Q  117 ttcattttaacttcttc 133  Q
     |||||||| |||||||    
T  3015 ctcattttatcttcttc 3031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 55 - 132
Target Start/End: Complemental strand, 269667 - 269590
Alignment:
Q  55 ttttaagtctcctagcctaacattccttatgcttgctaggattcttagtgttttaaataaatttcattttaacttctt 132  Q
    |||||||||| ||||| || |||| |||||||||||||  |||||  | |||||||||||||||||||||||||||||    
T  269667 ttttaagtcttctagcttagcatttcttatgcttgctaaaattctctgagttttaaataaatttcattttaacttctt 269590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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