View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8801_low_6 (Length: 250)
Name: NF8801_low_6
Description: NF8801
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8801_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 143; Significance: 3e-75; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 1 - 147
Target Start/End: Complemental strand, 55560734 - 55560588
Alignment:
| Q |
1 |
aacatcatacgaactctaatgaatattataataattagctagccaaattgcgtatctattttctttgagtcacatactcacacatgttttaaattcattt |
100 |
Q |
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| T |
55560734 |
aacatcatacgaactctaatgaatattataataattagctagccaaattgcgtatctattttctttgagtcacatactcacacatgttttaaattcattt |
55560635 |
T |
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| Q |
101 |
gtcattgtaggttggcaagaaactgaatttgtcagaccaaaataaga |
147 |
Q |
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| T |
55560634 |
gtcattgtaggttggcaagaaactgaatttgtcaaaccaaaataaga |
55560588 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 143 - 240
Target Start/End: Complemental strand, 55549435 - 55549338
Alignment:
| Q |
143 |
taagaatgttttcgttaagcttacatctctcgatgaccgcataaatcacaagcttggaatcattttcaactataatataggtaaaatcttcttctctg |
240 |
Q |
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|||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
55549435 |
taagaatgttttcgttaagcttacatatctcgatgaccgtataaatcacaagcttggaatcattttcaactataaaataggtaaaatcttcttctctg |
55549338 |
T |
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