View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8803_high_4 (Length: 323)
Name: NF8803_high_4
Description: NF8803
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8803_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 17 - 291
Target Start/End: Complemental strand, 43471154 - 43470877
Alignment:
| Q |
17 |
catgatatatagcgcgacataccatctcacaagagtatcacgacacctgtaatg----tgcagtgggtcacttttactttcatcaagttattcgtggtgt |
112 |
Q |
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| T |
43471154 |
catgatatatagcgcgacataccatctcacaagagtatcacgacacctgtaatgcatttgcagtgggtcccttttactttcatcaagttattcgtggtgt |
43471055 |
T |
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| Q |
113 |
gctcgcgattttttcattcgctgtatatagcatttgttcatggaaaatgtttaatgttacgacagagtcttgcacgaatttagacgaatggtaattattc |
212 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||| | |||| |
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| T |
43471054 |
gctcgcgattttttcattcgctgtatatagcatttgttcatggaaaatgcttaatgttacgacagagtcttgcacaaatttagacgaatggtgactattt |
43470955 |
T |
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| Q |
213 |
attttatttttaaaaatacagtaagttagattaaatttctataaagtatacaagtagtaaccaccatccgccaacactt |
291 |
Q |
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| T |
43470954 |
attttatttgt-aaaacacagcaagctagattaaatttctataaagtatacaagtagtaaccaccatctgccaacactt |
43470877 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 66; Significance: 4e-29; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 154 - 291
Target Start/End: Original strand, 4086158 - 4086293
Alignment:
| Q |
154 |
ggaaaatgtttaatgttacgacagagtcttgcacgaatttagacgaatggtaattattcattttatttttaaaaatacagtaagttagattaaatttcta |
253 |
Q |
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| T |
4086158 |
ggaaaatgcttaatgttaccacatagtcttgcataaatttagacgaatggtaattattcattttattttcaaaacc-caacaagctagattaaatttcta |
4086256 |
T |
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| Q |
254 |
taaagtatacaagtagtaaccaccatccgccaacactt |
291 |
Q |
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| T |
4086257 |
tagagtatac-agcagtaaccaccatctgccaacactt |
4086293 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 152 - 291
Target Start/End: Original strand, 7755504 - 7755643
Alignment:
| Q |
152 |
atggaaaatgtttaatgttacgacaga--gtcttgcacgaatttagacgaatggtaattattcattttatttttaaaaatacagtaagttagattaaatt |
249 |
Q |
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|||||||||| |||||||||||| | | || ||| ||||||||| |||||| |||| |||||||||||||||||||| || ||| ||||||||||| |
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| T |
7755504 |
atggaaaatgcttaatgttacgagacacggtattgtacgaatttatacgaatagtaactattcattttatttttaaaacc-caacaagctagattaaatt |
7755602 |
T |
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| Q |
250 |
tctataaagtatacaagtagtaaccaccatccgccaacactt |
291 |
Q |
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| T |
7755603 |
tctataaagtata-taggagtaactaccatctgccaacactt |
7755643 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 154 - 252
Target Start/End: Original strand, 26153223 - 26153320
Alignment:
| Q |
154 |
ggaaaatgtttaatgttacgacagagtcttgcacgaatttagacgaatggtaattattcattttatttttaaaaatacagtaagttagattaaatttct |
252 |
Q |
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| T |
26153223 |
ggaaaatgcttaatgttacgacacaatcttgcacgaatttagacgaatggtaactattcatttta-ttttcaaaatccaacaagctagattaaatttct |
26153320 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 156 - 264
Target Start/End: Complemental strand, 2210452 - 2210344
Alignment:
| Q |
156 |
aaaatgtttaatgttacgacagagtcttgcacgaatttagacgaat-ggtaattattcattttatttttaaaaatacagtaagttagattaaatttctat |
254 |
Q |
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|||||| ||||| |||||||| |||||||||||||||||||||||| ||||| ||||||||||| |||| ||||| || ||| |||||||||||||||| |
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| T |
2210452 |
aaaatgcttaatattacgacatagtcttgcacgaatttagacgaatgggtaactattcatttta-ttttcaaaatccaacaagctagattaaatttctat |
2210354 |
T |
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| Q |
255 |
aaagtataca |
264 |
Q |
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| |||||||| |
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| T |
2210353 |
agagtataca |
2210344 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 154 - 288
Target Start/End: Complemental strand, 41294591 - 41294457
Alignment:
| Q |
154 |
ggaaaatgtttaatgttacga--cagagtcttgcacgaatttagacgaatggtaattattcattttatttttaaaaatacagtaagttagattaaatttc |
251 |
Q |
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|||||||| || ||||||||| || ||||||||||||||||| |||||| |||| ||||||||||||||| |||| || ||| ||||||||||||| |
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| T |
41294591 |
ggaaaatgcttgatgttacgagacacagtcttgcacgaatttatacgaatagtaactattcattttattttcaaaacc-caacaagctagattaaatttc |
41294493 |
T |
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| Q |
252 |
tataaagtatacaagtagtaaccaccatccgccaaca |
288 |
Q |
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||||||| ||| || |||||| |||||| ||||||| |
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| T |
41294492 |
tataaagaata-taggagtaactaccatctgccaaca |
41294457 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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