View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8803_low_2 (Length: 369)
Name: NF8803_low_2
Description: NF8803
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8803_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 238; Significance: 1e-131; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 18 - 267
Target Start/End: Complemental strand, 9102291 - 9102042
Alignment:
| Q |
18 |
agtgattctccatatcttcagcacagaaatatcgataacaaattttgggcaagaaaatcaactaataaacacttaattaaaatacattctgtaattaaaa |
117 |
Q |
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| T |
9102291 |
agtgattctccatatcttcagcacagaaatatcgataacaaattttgggcaagaaaatcaactaataaacacttaagtaaaatacattctgtaattaaaa |
9102192 |
T |
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| Q |
118 |
tgcaaattagcgctgtaatcaactaataaaccctagtttatcccgatttaagcatgtatttctgtgagaagtgcaataaacatgaggaaaagttttctcg |
217 |
Q |
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| T |
9102191 |
tgcaaattagcgctgtaatcaactaataaaccctagtttatcccgatttaagcatgtatttctgtgagaagtgcaataaacatgaggaaaagttttcccg |
9102092 |
T |
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| Q |
218 |
aggtatattttcattcacattgaattcatcttcatcaatggttgttcaac |
267 |
Q |
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| T |
9102091 |
aggtatattttcattcacattgtattcatcttcatcaatggttgttcaac |
9102042 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 266 - 358
Target Start/End: Complemental strand, 9101585 - 9101493
Alignment:
| Q |
266 |
acctatttcatttatactggtctttcattttaatttaactgtcagatgcattctcaattactacggaattgtttgatatcttgatgtatctct |
358 |
Q |
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| T |
9101585 |
acctatttcatttatactggtctttcattttaatttaactgtcagatgcattctcaattactacggaattgtttgatatcttgatgtatctct |
9101493 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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