View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8803_low_3 (Length: 332)

Name: NF8803_low_3
Description: NF8803
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8803_low_3
NF8803_low_3
[»] chr4 (4 HSPs)
chr4 (1-164)||(1390694-1390860)
chr4 (253-323)||(1390865-1390935)
chr4 (153-242)||(45645951-45646040)
chr4 (40-92)||(45645847-45645899)
[»] chr5 (5 HSPs)
chr5 (17-242)||(34666319-34666547)
chr5 (152-242)||(34646763-34646853)
chr5 (153-237)||(19648706-19648790)
chr5 (40-118)||(19648822-19648900)
chr5 (17-96)||(34646625-34646707)
[»] chr8 (6 HSPs)
chr8 (152-242)||(14192654-14192744)
chr8 (40-256)||(14201545-14201755)
chr8 (168-278)||(14183738-14183851)
chr8 (168-242)||(40718477-40718551)
chr8 (46-119)||(14183601-14183674)
chr8 (48-108)||(40718360-40718420)
[»] chr6 (2 HSPs)
chr6 (169-239)||(34303447-34303517)
chr6 (159-241)||(33888832-33888914)


Alignment Details
Target: chr4 (Bit Score: 133; Significance: 4e-69; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 1 - 164
Target Start/End: Original strand, 1390694 - 1390860
Alignment:
Q  1 tttgttattcatttgcatcaaatgaaaatgattttccttt---cactgcacattttcaaggtgcagatattaagttgcattctattagcacctttgttca 97  Q
    |||||||||||||||||||||||||| ||||||||||| |   ||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||    
T  1390694 tttgttattcatttgcatcaaatgaatatgattttcctataatcactgcacattttgaaggtgcagatattaagttgcaatctattagcacctttgttca 1390793  T
Q  98 agttgccgatggggttgtttgtttggctcttgtcccatctcgaatcaataaagtcatctttgggaat 164  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  1390794 agttgccgatggggttgtttgtttggctcttgtcccatctcgaatcaataaaggcatctttgggaat 1390860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 253 - 323
Target Start/End: Original strand, 1390865 - 1390935
Alignment:
Q  253 tgtagactttgtttactttactccttgaatttataataataataatagtaattcattttttacttcatctc 323  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1390865 tgtagactttgtttactttactccttgaatttataataataataatagtaattcattttttacttcatctc 1390935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 153 - 242
Target Start/End: Original strand, 45645951 - 45646040
Alignment:
Q  153 atctttgggaatttggctcaacaaaatttgttggttggttatgatcttcaacaaaaaattgtgtcttttaagcctattgattgtaccaaa 242  Q
    |||||||| || |||||||||||||||||||||||||||| |||||||||||||  ||  ||||| ||||| |||| |||||||||||||    
T  45645951 atctttggtaacttggctcaacaaaatttgttggttggttgtgatcttcaacaaggaacagtgtcctttaaacctactgattgtaccaaa 45646040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 40 - 92
Target Start/End: Original strand, 45645847 - 45645899
Alignment:
Q  40 tcactgcacattttcaaggtgcagatattaagttgcattctattagcaccttt 92  Q
    |||| ||||||||| ||||||| ||| || |||||||||||||||| ||||||    
T  45645847 tcaccgcacattttaaaggtgctgatgttgagttgcattctattagtaccttt 45645899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 67; Significance: 1e-29; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 17 - 242
Target Start/End: Original strand, 34666319 - 34666547
Alignment:
Q  17 atcaaatgaaaatgattttccttt---cactgcacattttcaaggtgcagatattaagttgcattctattagcacctttgttcaagttgccgatggggtt 113  Q
    |||||||||| ||||||||||| |   ||| ||||||||| ||||||| |||||| |||||||||||||||| |||||||||| | || | |||||  ||    
T  34666319 atcaaatgaatatgattttcctataatcaccgcacattttaaaggtgccgatattgagttgcattctattagtacctttgttccaattactgatggtatt 34666418  T
Q  114 gtttgtttggctcttgtcccatctcgaatcaataaagt--catctttgggaatttggctcaacaaaatttgttggttggttatgatcttcaacaaaaaat 211  Q
    ||||| || ||| |    |||||||   ||||    ||  |||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||     
T  34666419 gtttgctttgctttccaaccatctcc--tcaacttggttccatctttgggaacttggctcaacaaaatttgttggttggttacgatcttcaacaaaaaac 34666516  T
Q  212 tgtgtcttttaagcctattgattgtaccaaa 242  Q
     ||||| ||||| |||| |||||||||||||    
T  34666517 agtgtcgtttaaacctactgattgtaccaaa 34666547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 152 - 242
Target Start/End: Original strand, 34646763 - 34646853
Alignment:
Q  152 catctttgggaatttggctcaacaaaatttgttggttggttatgatcttcaacaaaaaattgtgtcttttaagcctattgattgtaccaaa 242  Q
    |||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||  ||||| ||||| |||| |||||||||||||    
T  34646763 catctttgggaacttggctcaacaaaatttgttggttggttacgatcttcaacaaaaaacagtgtcgtttaaacctactgattgtaccaaa 34646853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 153 - 237
Target Start/End: Complemental strand, 19648790 - 19648706
Alignment:
Q  153 atctttgggaatttggctcaacaaaatttgttggttggttatgatcttcaacaaaaaattgtgtcttttaagcctattgattgta 237  Q
    |||||||| || ||||| |||| ||||||||||||||||||||||||||||||||| |||||||| |||||||||| ||||||||    
T  19648790 atctttggaaacttggcacaactaaatttgttggttggttatgatcttcaacaaaatattgtgtcgtttaagcctagtgattgta 19648706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 40 - 118
Target Start/End: Complemental strand, 19648900 - 19648822
Alignment:
Q  40 tcactgcacattttcaaggtgcagatattaagttgcattctattagcacctttgttcaagttgccgatggggttgtttg 118  Q
    |||||||||||||| |||||||||||||||||||| |  | ||||| ||||||| ||| ||||| ||||| || |||||    
T  19648900 tcactgcacattttaaaggtgcagatattaagttgaacccaattagtacctttgctcatgttgctgatggtgtggtttg 19648822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 96
Target Start/End: Original strand, 34646625 - 34646707
Alignment:
Q  17 atcaaatgaaaatgattttccttt---cactgcacattttcaaggtgcagatattaagttgcattctattagcacctttgttc 96  Q
    |||||||||| ||||||||||| |   ||| | ||||||| ||||||| ||| || |||||||||||||||| ||||||||||    
T  34646625 atcaaatgaatatgattttcctataatcaccgtacattttaaaggtgccgatgttgagttgcattctattagtacctttgttc 34646707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 63; Significance: 2e-27; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 152 - 242
Target Start/End: Original strand, 14192654 - 14192744
Alignment:
Q  152 catctttgggaatttggctcaacaaaatttgttggttggttatgatcttcaacaaaaaattgtgtcttttaagcctattgattgtaccaaa 242  Q
    ||||||||| ||||||||||| ||||||||| ||||||||||||||||||| |||||||||||||| ||||| |||| |||||||||||||    
T  14192654 catctttggaaatttggctcagcaaaatttgatggttggttatgatcttcagcaaaaaattgtgtcctttaaacctagtgattgtaccaaa 14192744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 40 - 256
Target Start/End: Original strand, 14201545 - 14201755
Alignment:
Q  40 tcactgcacattttcaaggtgcagatattaagttgcattctattagcacctttgttcaagttgccgatggggttgtttgtttggctcttgtcccatctcg 139  Q
    |||||||||||||| |||||||||||||||| ||| ||| |||||| |||||| || ||||| | |||||| |||  || |||||| || |||||||||     
T  14201545 tcactgcacattttaaaggtgcagatattaaattgtattatattagtacctttattaaagtttctgatgggattgcatgcttggcttttatcccatctca 14201644  T
Q  140 aatcaataaagtcatctttgggaatttggctcaacaaaatttgttggttggttatgatcttcaacaaaaaattgtgtcttttaagcctattgattgtacc 239  Q
    ||       || ||||||||| ||  |||||||||| |||||||||||||||||| |||||   ||||| | |||  | ||||||||| |||||||||||    
T  14201645 aac------agccatctttggaaacgtggctcaacagaatttgttggttggttataatcttgttcaaaatactgttacatttaagcctgttgattgtacc 14201738  T
Q  240 aaaccatattgagtgta 256  Q
    || ||||||||| ||||    
T  14201739 aagccatattgaatgta 14201755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 168 - 278
Target Start/End: Original strand, 14183738 - 14183851
Alignment:
Q  168 gctcaacaaaatttgttggttggttatgatcttcaacaaaaaattgtgtcttttaagcctattgattgtaccaaaccatattgag---tgtagactttgt 264  Q
    ||||| || ||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||| ||||   || || |   ||||||||||||    
T  14183738 gctcagcagaatttgttggttggttatgatcttcaacaaaaaattgtgtcgtttaagcctactgattgtagcaaagtgtaatgggtgttgtagactttgt 14183837  T
Q  265 ttactttactcctt 278  Q
    ||||||| ||||||    
T  14183838 ttactttcctcctt 14183851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 168 - 242
Target Start/End: Original strand, 40718477 - 40718551
Alignment:
Q  168 gctcaacaaaatttgttggttggttatgatcttcaacaaaaaattgtgtcttttaagcctattgattgtaccaaa 242  Q
    |||||||| |||||||||||||||||||| ||| ||||||||| |||||| |||||||||| |||||||| ||||    
T  40718477 gctcaacagaatttgttggttggttatgaccttaaacaaaaaactgtgtcatttaagcctactgattgtagcaaa 40718551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 46 - 119
Target Start/End: Original strand, 14183601 - 14183674
Alignment:
Q  46 cacattttcaaggtgcagatattaagttgcattctattagcacctttgttcaagttgccgatggggttgtttgt 119  Q
    |||||||| ||||||| ||| ||||||||||| ||||||| || |||||| | ||||| |||||  ||||||||    
T  14183601 cacattttaaaggtgcggatgttaagttgcatcctattagtacatttgttgatgttgcagatggcattgtttgt 14183674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 48 - 108
Target Start/End: Original strand, 40718360 - 40718420
Alignment:
Q  48 cattttcaaggtgcagatattaagttgcattctattagcacctttgttcaagttgccgatg 108  Q
    |||||| ||||||| ||||||||||||||| | ||||| |||||||||   ||||||||||    
T  40718360 cattttaaaggtgcggatattaagttgcatcccattagtacctttgtttccgttgccgatg 40718420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 169 - 239
Target Start/End: Original strand, 34303447 - 34303517
Alignment:
Q  169 ctcaacaaaatttgttggttggttatgatcttcaacaaaaaattgtgtcttttaagcctattgattgtacc 239  Q
    |||||||| ||||  ||||||||||||| ||||||||||||| ||||||||||||| || | |||||||||    
T  34303447 ctcaacaagatttcatggttggttatgaccttcaacaaaaaactgtgtcttttaagtctgtagattgtacc 34303517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 159 - 241
Target Start/End: Complemental strand, 33888914 - 33888832
Alignment:
Q  159 gggaatttggctcaacaaaatttgttggttggttatgatcttcaacaaaaaattgtgtcttttaagcctattgattgtaccaa 241  Q
    ||||| ||||| ||||| || ||||| ||||||||||| || ||| |||| ||| | |||||||||||||||||||| |||||    
T  33888914 gggaacttggcacaacataacttgttagttggttatgacctacaaaaaaatattatctcttttaagcctattgattgcaccaa 33888832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University