View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8803_low_5 (Length: 300)
Name: NF8803_low_5
Description: NF8803
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8803_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 248; Significance: 1e-138; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 1 - 281
Target Start/End: Complemental strand, 42223187 - 42222911
Alignment:
| Q |
1 |
tgggaaaaaatttacattccaaaaagccccttacacagagaataataaccaacaaattgaatatcaatcaagtgaaaagaatggaaaggaaaatggaacc |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| | |
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| T |
42223187 |
tgggaaaaaatttacattccaaaaagccccttacacagagaataataaccaacaaattgaatatcaa----gtgaaaagaatggaaaggaaaatggaaac |
42223092 |
T |
|
| Q |
101 |
atttcaagtcagagtaaggttcagaagaatagaattgatatgcccattgtaaaacatccagcggccacccaagggcttaaacgttcacctgcgcaataac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
42223091 |
atttcaagtcagagtaaggttcagaagaatagaattgatacgcccattgtaaaacatccaacggccacccaagggcttaaacgttcacctgcgcaataac |
42222992 |
T |
|
| Q |
201 |
atgtaaactaaagtagtcaataaatctcaaatagaggaaaagccaaactagaagaccacaatgcaactcccttcgccaaaa |
281 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42222991 |
atgtaaactaaagtagtcaataaatctcgaatagaggaaaagccaaactagaagaccacaatgcaactcccttcgccaaaa |
42222911 |
T |
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