View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8803_low_8 (Length: 283)
Name: NF8803_low_8
Description: NF8803
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8803_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 234; Significance: 1e-129; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 16 - 269
Target Start/End: Complemental strand, 14349650 - 14349397
Alignment:
| Q |
16 |
tctacaacatgtaaacttttatttgattgatcacggttgtgccatattagaaaaagagttgagctttgtttcattttgtcctctatgcatcatgccaata |
115 |
Q |
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| T |
14349650 |
tctacaacatgtaaacttttatttgattgatcacggttgtgctatattagaaaaagagttgagctgtgtttcattttgtcctctatgcatcatgccaata |
14349551 |
T |
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| Q |
116 |
agatttttctgatatatatctttgttcatatagttagttgattattgagcctcttataattcgtgggtttattttgaagtttgaggttatatcaatgttt |
215 |
Q |
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|||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14349550 |
agatttttctgatatatatcttcgttcatattgttagttgattattgagcctcttataattcgtgggtttattttgaagtttgaggttatatcaatgttt |
14349451 |
T |
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| Q |
216 |
atcgtttttcagaagttgttttttaataggcttaataacagttttcgcccccta |
269 |
Q |
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| T |
14349450 |
atcgtttttcagaagttgttttttaataggcttaatagcagttttcgcccccta |
14349397 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 107 - 242
Target Start/End: Complemental strand, 13464455 - 13464320
Alignment:
| Q |
107 |
atgccaataagatttttctgatatatatctttgttcatatagttagttgattattgagcctcttataattcgtgggtttattttgaagtttgaggttata |
206 |
Q |
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|||||| ||||||||||||||||||||| || |||| |||| ||||||| ||||||| ||||||||| || ||| ||||||||||| |||| |||||| |
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| T |
13464455 |
atgccattaagatttttctgatatatattttcgttcctataattagttggttattgatcctcttatagtttttggttttattttgaaatttggagttata |
13464356 |
T |
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| Q |
207 |
tcaatgtttatcgtttttcagaagttgttttttaat |
242 |
Q |
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| T |
13464355 |
tcaatgtttatcatttttcagaagttgttttttaat |
13464320 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 16 - 77
Target Start/End: Complemental strand, 13464522 - 13464461
Alignment:
| Q |
16 |
tctacaacatgtaaacttttatttgattgatcacggttgtgccatattagaaaaagagttga |
77 |
Q |
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||||||| ||||||||||| |||||||||||||| |||||| ||| |||| |||||| |||| |
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| T |
13464522 |
tctacaagatgtaaactttaatttgattgatcacagttgtggcatgttagcaaaagacttga |
13464461 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 16 - 51
Target Start/End: Original strand, 39438518 - 39438553
Alignment:
| Q |
16 |
tctacaacatgtaaacttttatttgattgatcacgg |
51 |
Q |
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||||| |||||||||||||||||||||||||||||| |
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| T |
39438518 |
tctacgacatgtaaacttttatttgattgatcacgg |
39438553 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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