View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8803_low_9 (Length: 242)

Name: NF8803_low_9
Description: NF8803
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8803_low_9
NF8803_low_9
[»] chr8 (2 HSPs)
chr8 (1-223)||(29271952-29272174)
chr8 (168-222)||(22023240-22023294)
[»] chr6 (34 HSPs)
chr6 (1-223)||(27696703-27696925)
chr6 (1-223)||(27680808-27681030)
chr6 (1-223)||(27609234-27609456)
chr6 (1-223)||(27716613-27716835)
chr6 (1-223)||(26648279-26648501)
chr6 (1-223)||(26754247-26754469)
chr6 (2-223)||(26804314-26804535)
chr6 (1-223)||(31286399-31286621)
chr6 (1-223)||(27675721-27675943)
chr6 (6-222)||(26625075-26625291)
chr6 (6-222)||(26731052-26731268)
chr6 (5-223)||(27704358-27704576)
chr6 (6-182)||(28788089-28788265)
chr6 (6-182)||(28794210-28794386)
chr6 (1-223)||(27591124-27591346)
chr6 (3-111)||(27425835-27425943)
chr6 (1-112)||(25491525-25491636)
chr6 (1-186)||(26813340-26813525)
chr6 (3-221)||(26657820-26658038)
chr6 (3-221)||(26763791-26764009)
chr6 (1-139)||(26863440-26863578)
chr6 (1-222)||(26885916-26886137)
chr6 (1-191)||(27663347-27663534)
chr6 (1-169)||(26960921-26961086)
chr6 (77-191)||(27216377-27216491)
chr6 (65-185)||(26850568-26850688)
chr6 (4-146)||(27602896-27603038)
chr6 (7-184)||(26825668-26825845)
chr6 (1-37)||(26951592-26951628)
chr6 (1-37)||(26979231-26979267)
chr6 (1-43)||(26637411-26637453)
chr6 (1-43)||(26743377-26743419)
chr6 (65-118)||(26979299-26979352)
chr6 (1-42)||(27216301-27216342)
[»] chr2 (1 HSPs)
chr2 (8-193)||(17991355-17991540)
[»] scaffold0277 (2 HSPs)
scaffold0277 (6-198)||(11822-12014)
scaffold0277 (6-182)||(2875-3051)
[»] chr1 (3 HSPs)
chr1 (1-191)||(266501-266691)
chr1 (1-112)||(28131725-28131836)
chr1 (1-37)||(28125981-28126017)
[»] scaffold1870 (1 HSPs)
scaffold1870 (6-182)||(616-792)
[»] scaffold0419 (1 HSPs)
scaffold0419 (6-182)||(9335-9511)
[»] scaffold0003 (1 HSPs)
scaffold0003 (3-111)||(61420-61528)
[»] chr4 (7 HSPs)
chr4 (4-111)||(18075613-18075720)
chr4 (2-194)||(18677766-18677958)
chr4 (2-194)||(18697608-18697800)
chr4 (2-194)||(18653684-18653876)
chr4 (2-194)||(18729702-18729894)
chr4 (2-182)||(18722292-18722472)
chr4 (2-194)||(18687820-18688012)
[»] scaffold0349 (1 HSPs)
scaffold0349 (142-223)||(15251-15332)


Alignment Details
Target: chr8 (Bit Score: 211; Significance: 1e-116; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 29272174 - 29271952
Alignment:
Q  1 ttgttaaaagggaactagtaaaattgaaatgatatatatgaatctccattccatggaatccgtgatagacaagaaaggaaaggccttcaagaagatgaca 100  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||    
T  29272174 ttgttaaaagggaactagtaaaattgaaatgatatatacgaatctccattccatagaatctgtgatagacaagaaaggaaaggccttcaagaagatgaca 29272075  T
Q  101 aaactcaaaacagttatcttcgaaaatggccatttttctggaggtctcaagcatttaccaagaagtttgagtgtattgaaatggaaaggatgtttatcga 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29272074 aaactcaaaacagttatcttcgaaaatggccatttttctggaggtctcaagcatttaccaagaagtttgagtgtattgaaatggaaaggatgtttatcga 29271975  T
Q  201 agtgtctgtcatctagtatttta 223  Q
    |||||||||||||||||||||||    
T  29271974 agtgtctgtcatctagtatttta 29271952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 168 - 222
Target Start/End: Original strand, 22023240 - 22023294
Alignment:
Q  168 tgagtgtattgaaatggaaaggatgtttatcgaagtgtctgtcatctagtatttt 222  Q
    |||||||||| ||||||||||||||||||||| ||| ||| ||||||||||||||    
T  22023240 tgagtgtattaaaatggaaaggatgtttatcggagtctctatcatctagtatttt 22023294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 195; Significance: 1e-106; HSPs: 34)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 27696925 - 27696703
Alignment:
Q  1 ttgttaaaagggaactagtaaaattgaaatgatatatatgaatctccattccatggaatccgtgatagacaagaaaggaaaggccttcaagaagatgaca 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27696925 ttgttaaaagggaactagtaaaattgaaatgatatatatgaatctccactccatggaatccgtgatagacaagaaaggaaaggccttcaagaagatgaca 27696826  T
Q  101 aaactcaaaacagttatcttcgaaaatggccatttttctggaggtctcaagcatttaccaagaagtttgagtgtattgaaatggaaaggatgtttatcga 200  Q
    |||||||||||||||||| | ||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||    
T  27696825 aaactcaaaacagttatcattgaaaatggccatttttctgaaggtctcaagcatctaccaagaagtttgagtgtattgaaatggaagggatgtttatcga 27696726  T
Q  201 agtgtctgtcatctagtatttta 223  Q
    ||||||||||| |||||||||||    
T  27696725 agtgtctgtcaactagtatttta 27696703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 27680808 - 27681030
Alignment:
Q  1 ttgttaaaagggaactagtaaaattgaaatgatatatatgaatctccattccatggaatccgtgatagacaagaaaggaaaggccttcaagaagatgaca 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27680808 ttgttaaaagggaactagtaaaattgaaatgatatatatgaatctccactccatggaatccgtgatagacaagaaaggaaaggccttcaagaagatgaca 27680907  T
Q  101 aaactcaaaacagttatcttcgaaaatggccatttttctggaggtctcaagcatttaccaagaagtttgagtgtattgaaatggaaaggatgtttatcga 200  Q
    ||||| |||||| ||||| | |||||||||| ||||||||||||||||||| || | ||||| |||||| ||||||||||||||||||||||||||||||    
T  27680908 aaactgaaaacacttatcattgaaaatggccttttttctggaggtctcaagtatcttccaagcagtttgcgtgtattgaaatggaaaggatgtttatcga 27681007  T
Q  201 agtgtctgtcatctagtatttta 223  Q
    |||||||||||||||||||||||    
T  27681008 agtgtctgtcatctagtatttta 27681030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 27609456 - 27609234
Alignment:
Q  1 ttgttaaaagggaactagtaaaattgaaatgatatatatgaatctccattccatggaatccgtgatagacaagaaaggaaaggccttcaagaagatgaca 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27609456 ttgttaaaagggaactagtaaaattgaaatgatatatatgaatctccactccatggaatccgtgatagacaagaaaggaaaggccttcaagaagatgaca 27609357  T
Q  101 aaactcaaaacagttatcttcgaaaatggccatttttctggaggtctcaagcatttaccaagaagtttgagtgtattgaaatggaaaggatgtttatcga 200  Q
    ||||| |||||| ||||| | |||||||||||||||||||||||||| ||| || | ||||| |||||| ||||||||||||||||||||||||||||||    
T  27609356 aaactgaaaacacttatcattgaaaatggccatttttctggaggtctgaagtatcttccaagcagtttgcgtgtattgaaatggaaaggatgtttatcga 27609257  T
Q  201 agtgtctgtcatctagtatttta 223  Q
    ||||||||||||||| |||||||    
T  27609256 agtgtctgtcatctaatatttta 27609234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 27716835 - 27716613
Alignment:
Q  1 ttgttaaaagggaactagtaaaattgaaatgatatatatgaatctccattccatggaatccgtgatagacaagaaaggaaaggccttcaagaagatgaca 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27716835 ttgttaaaagggaactagtaaaattgaaatgatatatatgaatctccactccatggaatccgtgatagacaagaaaggaaaggccttcaagaagatgaca 27716736  T
Q  101 aaactcaaaacagttatcttcgaaaatggccatttttctggaggtctcaagcatttaccaagaagtttgagtgtattgaaatggaaaggatgtttatcga 200  Q
    ||||| |||||| ||||| | ||||||||||||| ||||  |||||||||| || | ||||| |||||||||||||||||||||||||||||||||||||    
T  27716735 aaactgaaaacacttatcattgaaaatggccattgttctaaaggtctcaagtatcttccaagcagtttgagtgtattgaaatggaaaggatgtttatcga 27716636  T
Q  201 agtgtctgtcatctagtatttta 223  Q
    |||||||||||||||| ||||||    
T  27716635 agtgtctgtcatctaggatttta 27716613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 26648279 - 26648501
Alignment:
Q  1 ttgttaaaagggaactagtaaaattgaaatgatatatatgaatctccattccatggaatccgtgatagacaagaaaggaaaggccttcaagaagatgaca 100  Q
    ||||| ||||||||||||||||||||||||||||||||||||| |||| |||||||||||||| |||||| |||||||||||||||||||||||||||||    
T  26648279 ttgttgaaagggaactagtaaaattgaaatgatatatatgaatttccactccatggaatccgtaatagaccagaaaggaaaggccttcaagaagatgaca 26648378  T
Q  101 aaactcaaaacagttatcttcgaaaatggccatttttctggaggtctcaagcatttaccaagaagtttgagtgtattgaaatggaaaggatgtttatcga 200  Q
    |||||||||||| ||||| | |||||||| |||||||||  |||||| ||  || | ||||| |||||||| ||||||||||||||||||||||||||      
T  26648379 aaactcaaaacacttatcattgaaaatggtcatttttctaaaggtcttaaatatcttccaagcagtttgagagtattgaaatggaaaggatgtttatcag 26648478  T
Q  201 agtgtctgtcatctagtatttta 223  Q
    ||| ||| |||||||||||||||    
T  26648479 agtctctatcatctagtatttta 26648501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 26754247 - 26754469
Alignment:
Q  1 ttgttaaaagggaactagtaaaattgaaatgatatatatgaatctccattccatggaatccgtgatagacaagaaaggaaaggccttcaagaagatgaca 100  Q
    ||||| ||||||||||||||||||||||||||||||||||||| |||| |||||||||||||| |||||| |||||||||||||||||||||||||||||    
T  26754247 ttgttgaaagggaactagtaaaattgaaatgatatatatgaatttccactccatggaatccgtaatagaccagaaaggaaaggccttcaagaagatgaca 26754346  T
Q  101 aaactcaaaacagttatcttcgaaaatggccatttttctggaggtctcaagcatttaccaagaagtttgagtgtattgaaatggaaaggatgtttatcga 200  Q
    |||||||||||| ||||| | |||||||| |||||||||  |||||| ||  || | ||||| |||||||| ||||||||||||||||||||||||||      
T  26754347 aaactcaaaacacttatcattgaaaatggtcatttttctaaaggtcttaaatatcttccaagcagtttgagagtattgaaatggaaaggatgtttatcag 26754446  T
Q  201 agtgtctgtcatctagtatttta 223  Q
    ||| ||| |||||||||||||||    
T  26754447 agtctctatcatctagtatttta 26754469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 2 - 223
Target Start/End: Original strand, 26804314 - 26804535
Alignment:
Q  2 tgttaaaagggaactagtaaaattgaaatgatatatatgaatctccattccatggaatccgtgatagacaagaaaggaaaggccttcaagaagatgacaa 101  Q
    ||||||||||||||||||||||||||||||||| |||||||| |||| |||||||||||||| |||||| ||||||||||||||||||| ||||||||||    
T  26804314 tgttaaaagggaactagtaaaattgaaatgataaatatgaatttccactccatggaatccgtaatagaccagaaaggaaaggccttcaaaaagatgacaa 26804413  T
Q  102 aactcaaaacagttatcttcgaaaatggccatttttctggaggtctcaagcatttaccaagaagtttgagtgtattgaaatggaaaggatgtttatcgaa 201  Q
    |||| | |||| ||||| | |||||||| |||||||||| |||||||||| || | ||||| |||||||  ||||||||||||||||||||||||||| |    
T  26804414 aactgagaacacttatcattgaaaatggacatttttctgaaggtctcaagtatcttccaagcagtttgatagtattgaaatggaaaggatgtttatcgga 26804513  T
Q  202 gtgtctgtcatctagtatttta 223  Q
    || ||| |||||||||||||||    
T  26804514 gtctctatcatctagtatttta 26804535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 31286399 - 31286621
Alignment:
Q  1 ttgttaaaagggaactagtaaaattgaaatgatatatatgaatctccattccatggaatccgtgatagacaagaaaggaaaggccttcaagaagatgaca 100  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||| |||||| ||||||||| |||||||||||||||||||    
T  31286399 ttgttaaaagggaactagtaaaattgaaatgatatatatgaatttccactccatggaatccgtaatagaccagaaaggaatggccttcaagaagatgaca 31286498  T
Q  101 aaactcaaaacagttatcttcgaaaatggccatttttctggaggtctcaagcatttaccaagaagtttgagtgtattgaaatggaaaggatgtttatcga 200  Q
    ||||| |||||| | ||| | |||||||||||||||||    || |||||| || | ||||  |||||||| ||||||||||||||||||||||||| |     
T  31286499 aaacttaaaacactaatcattgaaaatggccatttttccaatggactcaagtatcttccaaacagtttgagagtattgaaatggaaaggatgtttattgg 31286598  T
Q  201 agtgtctgtcatctagtatttta 223  Q
    ||| ||| |||||||||||||||    
T  31286599 agtctctatcatctagtatttta 31286621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 27675943 - 27675721
Alignment:
Q  1 ttgttaaaagggaactagtaaaattgaaatgatatatatgaatctccattccatggaatccgtgatagacaagaaaggaaaggccttcaagaagatgaca 100  Q
    |||||||||||||||| |||||| ||||||||||| ||||||| | || |||||||||||||| |||||||||||||||||||||||||| |||||||||    
T  27675943 ttgttaaaagggaactggtaaaactgaaatgatatgtatgaatttgcactccatggaatccgtaatagacaagaaaggaaaggccttcaaaaagatgaca 27675844  T
Q  101 aaactcaaaacagttatcttcgaaaatggccatttttctggaggtctcaagcatttaccaagaagtttgagtgtattgaaatggaaaggatgtttatcga 200  Q
    | | | |||||| ||||| | ||||||||||||| ||||  ||||||||||||| | ||||| |||||||  | |||||||||| ||||||||||||| |    
T  27675843 agattgaaaacacttatcattgaaaatggccattgttctaaaggtctcaagcatcttccaagcagtttgaaagcattgaaatgggaaggatgtttatcaa 27675744  T
Q  201 agtgtctgtcatctagtatttta 223  Q
    ||| ||| || ||||||||||||    
T  27675743 agtctctctcgtctagtatttta 27675721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 6 - 222
Target Start/End: Original strand, 26625075 - 26625291
Alignment:
Q  6 aaaagggaactagtaaaattgaaatgatatatatgaatctccattccatggaatccgtgatagacaagaaaggaaaggccttcaagaagatgacaaaact 105  Q
    |||||||||||||||||||||||||||||||||||||| | |  || ||||||||||| |||||| |||||||||||||||||| |||||||||||||||    
T  26625075 aaaagggaactagtaaaattgaaatgatatatatgaattttccctctatggaatccgtaatagaccagaaaggaaaggccttcaggaagatgacaaaact 26625174  T
Q  106 caaaacagttatcttcgaaaatggccatttttctggaggtctcaagcatttaccaagaagtttgagtgtattgaaatggaaaggatgtttatcgaagtgt 205  Q
    ||||||| ||||| | ||| |||| |  ||||||  |||||||||| || | ||||| |||||||| ||||||||||||||||||||||||||| ||| |    
T  26625175 caaaacacttatcattgaagatggtcggttttctaaaggtctcaagtatcttccaagcagtttgagagtattgaaatggaaaggatgtttatcggagtct 26625274  T
Q  206 ctgtcatctagtatttt 222  Q
    || ||| ||||| ||||    
T  26625275 ctatcagctagtttttt 26625291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 6 - 222
Target Start/End: Original strand, 26731052 - 26731268
Alignment:
Q  6 aaaagggaactagtaaaattgaaatgatatatatgaatctccattccatggaatccgtgatagacaagaaaggaaaggccttcaagaagatgacaaaact 105  Q
    |||||||||||||||||||||||||||||||||||||| | |  || ||||||||||| |||||| |||||||||||||||||| |||||||||||||||    
T  26731052 aaaagggaactagtaaaattgaaatgatatatatgaattttccctctatggaatccgtaatagaccagaaaggaaaggccttcaggaagatgacaaaact 26731151  T
Q  106 caaaacagttatcttcgaaaatggccatttttctggaggtctcaagcatttaccaagaagtttgagtgtattgaaatggaaaggatgtttatcgaagtgt 205  Q
    ||||||| ||||| | ||| |||| |  ||||||  |||||||||| || | ||||| |||||||| ||||||||||||||||||||||||||| ||| |    
T  26731152 caaaacacttatcattgaagatggtcggttttctaaaggtctcaagtatcttccaagcagtttgagagtattgaaatggaaaggatgtttatcggagtct 26731251  T
Q  206 ctgtcatctagtatttt 222  Q
    || ||| ||||| ||||    
T  26731252 ctatcagctagtttttt 26731268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 5 - 223
Target Start/End: Complemental strand, 27704576 - 27704358
Alignment:
Q  5 taaaagggaactagtaaaattgaaatgatatatatgaatctccattccatggaatccgtgatagacaagaaaggaaaggccttcaagaagatgacaaaac 104  Q
    ||||||||||||||||||||| ||||||| ||||||||| | || |||||||||||| | |||||| | ||||||| |||||||||||||||||||| |     
T  27704576 taaaagggaactagtaaaattcaaatgatgtatatgaattttcactccatggaatccataatagaccaaaaaggaatggccttcaagaagatgacaagat 27704477  T
Q  105 tcaaaacagttatcttcgaaaatggccatttttctggaggtctcaagcatttaccaagaagtttgagtgtattgaaatggaaaggatgtttatcgaagtg 204  Q
    | |||||| ||||| | ||||||||||||| ||||  |||||||||| || | ||||| |||||||  | |||||||||| ||||||||||||| ||||     
T  27704476 tgaaaacacttatcattgaaaatggccattgttctaaaggtctcaagtatcttccaagcagtttgaaagcattgaaatgggaaggatgtttatcaaagtc 27704377  T
Q  205 tctgtcatctagtatttta 223  Q
    ||| || ||||||||||||    
T  27704376 tctatcgtctagtatttta 27704358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 6 - 182
Target Start/End: Original strand, 28788089 - 28788265
Alignment:
Q  6 aaaagggaactagtaaaattgaaatgatatatatgaatctccattccatggaatccgtgatagacaagaaaggaaaggccttcaagaagatgacaaaact 105  Q
    |||||||||||||||||||||||||||||||||||||| |||  |||  ||||||||| ||||||||||||||||||||||||||||||||||||| | |    
T  28788089 aaaagggaactagtaaaattgaaatgatatatatgaatttcccctccgaggaatccgtaatagacaagaaaggaaaggccttcaagaagatgacaagatt 28788188  T
Q  106 caaaacagttatcttcgaaaatggccatttttctggaggtctcaagcatttaccaagaagtttgagtgtattgaaat 182  Q
     |||||  ||||| | ||||||||||||||||||  |||||||||  || | ||||| |||||||| ||||||||||    
T  28788189 gaaaacgcttatcattgaaaatggccatttttctaaaggtctcaactatcttccaagtagtttgagagtattgaaat 28788265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 6 - 182
Target Start/End: Original strand, 28794210 - 28794386
Alignment:
Q  6 aaaagggaactagtaaaattgaaatgatatatatgaatctccattccatggaatccgtgatagacaagaaaggaaaggccttcaagaagatgacaaaact 105  Q
    |||||||||||||||||||||||||||||||||||||| |||  |||  ||||||||| ||||||||||||||||||||||||||||||||||||| | |    
T  28794210 aaaagggaactagtaaaattgaaatgatatatatgaatttcccctccgaggaatccgtaatagacaagaaaggaaaggccttcaagaagatgacaagatt 28794309  T
Q  106 caaaacagttatcttcgaaaatggccatttttctggaggtctcaagcatttaccaagaagtttgagtgtattgaaat 182  Q
     |||||  ||||| | ||||||||||||||||||  |||||||||  || | ||||| |||||||| ||||||||||    
T  28794310 gaaaacgcttatcattgaaaatggccatttttctaaaggtctcaactatcttccaagtagtttgagagtattgaaat 28794386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 27591346 - 27591124
Alignment:
Q  1 ttgttaaaagggaactagtaaaattgaaatgatatatatgaatctccattccatggaatccgtgatagacaagaaaggaaaggccttcaagaagatgaca 100  Q
    ||||||| |||||||| |||||| ||||||||||| ||||||| | || || |||||||| || |||||||||||||||||||||||||| |||||||||    
T  27591346 ttgttaacagggaactggtaaaactgaaatgatatgtatgaatttgcactctatggaatctgtaatagacaagaaaggaaaggccttcaaaaagatgaca 27591247  T
Q  101 aaactcaaaacagttatcttcgaaaatggccatttttctggaggtctcaagcatttaccaagaagtttgagtgtattgaaatggaaaggatgtttatcga 200  Q
    | | | |||||| ||||  | ||||||||||||| ||||  |||||||||| || | | ||| |||||||  | |||||||||| ||||||||||||| |    
T  27591246 agattgaaaacacttattattgaaaatggccattgttctaaaggtctcaagtatcttcgaagcagtttgaaagcattgaaatgggaaggatgtttatcaa 27591147  T
Q  201 agtgtctgtcatctagtatttta 223  Q
    ||| ||| || ||||||||||||    
T  27591146 agtctctatcgtctagtatttta 27591124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 3 - 111
Target Start/End: Complemental strand, 27425943 - 27425835
Alignment:
Q  3 gttaaaagggaactagtaaaattgaaatgatatatatgaatctccattccatggaatccgtgatagacaagaaaggaaaggccttcaagaagatgacaaa 102  Q
    ||||||||||||| ||||||||||||||||||||||||||| | || || ||||||||||| ||||||||||| |||||||||||||||||||||||| |    
T  27425943 gttaaaagggaaccagtaaaattgaaatgatatatatgaatttgcactctatggaatccgtaatagacaagaatggaaaggccttcaagaagatgacaca 27425844  T
Q  103 actcaaaac 111  Q
     ||||||||    
T  27425843 cctcaaaac 27425835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 112
Target Start/End: Complemental strand, 25491636 - 25491525
Alignment:
Q  1 ttgttaaaagggaactagtaaaattgaaatgatatatatgaatctccattccatggaatccgtgatagacaagaaaggaaaggccttcaagaagatgaca 100  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||  |||||||||| ||  ||||||  ||| ||| ||||||||||||||| ||||    
T  25491636 ttgttaaaagggaactagtaaaattgaaatgatatatatgaatttcccctccatggaattcgaaatagactggaatggagaggccttcaagaagacgaca 25491537  T
Q  101 aaactcaaaaca 112  Q
    ||||||||||||    
T  25491536 aaactcaaaaca 25491525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 1 - 186
Target Start/End: Original strand, 26813340 - 26813525
Alignment:
Q  1 ttgttaaaagggaactagtaaaattgaaatgatatatatgaatctccattccatggaatccgtgatagacaagaaaggaaaggccttcaagaagatgaca 100  Q
    ||||||||||||||||||||||||||||||||||||| | ||| |||   | | | | |||| ||||||   ||| ||||||||||||||||||||||||    
T  26813340 ttgttaaaagggaactagtaaaattgaaatgatatatctaaatttccccacaaagaattccgagatagattggaatggaaaggccttcaagaagatgaca 26813439  T
Q  101 aaactcaaaacagttatcttcgaaaatggccatttttctggaggtctcaagcatttaccaagaagtttgagtgtattgaaatggaa 186  Q
    |||||||||||| ||||  | |||||||| || ||||||  ||||| ||||||| | || || | |||||| |||||||| |||||    
T  26813440 aaactcaaaacacttattattgaaaatggtcaattttctaaaggtcccaagcatcttcctagtactttgagagtattgaagtggaa 26813525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 3 - 221
Target Start/End: Original strand, 26657820 - 26658038
Alignment:
Q  3 gttaaaagggaactagtaaaattgaaatgatatatatgaatctccattccatggaatccgtgatagacaagaaaggaaaggccttcaagaagatgacaaa 102  Q
    ||||||||||||| ||||| ||||||||||||||| |||||   |  || |||||| || | ||||||  ||| |||||| |||||| ||||||||||||    
T  26657820 gttaaaagggaaccagtaacattgaaatgatatatctgaattgtccctcgatggaaaccataatagactggaatggaaagcccttcaggaagatgacaaa 26657919  T
Q  103 actcaaaacagttatcttcgaaaatggccatttttctggaggtctcaagcatttaccaagaagtttgagtgtattgaaatggaaaggatgtttatcgaag 202  Q
     ||||||||  ||||| | |||||||||| |||||||  |||||  || ||| | ||||| ||||||||  | ||||||||||||||||||   ||||||    
T  26657920 tctcaaaactcttatcattgaaaatggccgtttttctaaaggtccaaaacatcttccaagtagtttgagatttttgaaatggaaaggatgtccttcgaag 26658019  T
Q  203 tgtctgtcatctagtattt 221  Q
    | ||| |||||| ||||||    
T  26658020 tctctatcatcttgtattt 26658038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 3 - 221
Target Start/End: Original strand, 26763791 - 26764009
Alignment:
Q  3 gttaaaagggaactagtaaaattgaaatgatatatatgaatctccattccatggaatccgtgatagacaagaaaggaaaggccttcaagaagatgacaaa 102  Q
    ||||||||||||| ||||| ||||||||||||||| |||||   |  || |||||| || | ||||||  ||| |||||| |||||| ||||||||||||    
T  26763791 gttaaaagggaaccagtaacattgaaatgatatatctgaattgtccctcgatggaaaccataatagactggaatggaaagcccttcaggaagatgacaaa 26763890  T
Q  103 actcaaaacagttatcttcgaaaatggccatttttctggaggtctcaagcatttaccaagaagtttgagtgtattgaaatggaaaggatgtttatcgaag 202  Q
     ||||||||  ||||| | |||||||||| |||||||  |||||  || ||| | ||||| ||||||||  | ||||||||||||||||||   ||||||    
T  26763891 tctcaaaactcttatcattgaaaatggccgtttttctaaaggtccaaaacatcttccaagtagtttgagatttttgaaatggaaaggatgtccttcgaag 26763990  T
Q  203 tgtctgtcatctagtattt 221  Q
    | ||| |||||| ||||||    
T  26763991 tctctatcatcttgtattt 26764009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 139
Target Start/End: Original strand, 26863440 - 26863578
Alignment:
Q  1 ttgttaaaagggaactagtaaaattgaaatgatatatatgaatctccattccatggaatccgtgatagacaagaaaggaaaggccttcaagaagatgaca 100  Q
    |||| |||||||||||||||||||||||||| ||||| || ||   | ||| | |||| |||| ||||||  ||| |||||||||||||||||||||| |    
T  26863440 ttgtgaaaagggaactagtaaaattgaaatggtatatctgcattgtccttcaacggaacccgtaatagactggaatggaaaggccttcaagaagatgaaa 26863539  T
Q  101 aaactcaaaacagttatcttcgaaaatggccatttttct 139  Q
    |||||||||||| || || | ||||||||||||||||||    
T  26863540 aaactcaaaacacttgtcattgaaaatggccatttttct 26863578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 26885916 - 26886137
Alignment:
Q  1 ttgttaaaagggaactagtaaaattgaaatgatatatatgaa-tctccattccatggaatccgtgatagacaagaaaggaaaggccttcaagaagatgac 99  Q
    |||||||||||||||||| || ||||||||||||||| |||| | |||   | |||||| |||| ||||||   || |||||| ||||||||||||||||    
T  26885916 ttgttaaaagggaactagcaacattgaaatgatatatctgaactgtcccg-caatggaacccgtaatagactgtaatggaaagtccttcaagaagatgac 26886014  T
Q  100 aaaactcaaaacagttatcttcgaaaatggccatttttctggaggtctcaagcatttaccaagaagtttgagtgtattgaaatggaaaggatgtttatcg 199  Q
    ||||||||||||  ||||| | |||||||||||||||||   |||||  ||| || | ||||  |||||||| ||||| |||||||||||||||   ||     
T  26886015 aaaactcaaaactcttatcattgaaaatggccatttttccaaaggtccgaagtatcttccaaatagtttgagagtatttaaatggaaaggatgtacttca 26886114  T
Q  200 aagtgtctgtcatctagtatttt 222  Q
     ||| ||| ||||||||||||||    
T  26886115 gagtctctatcatctagtatttt 26886137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 1 - 191
Target Start/End: Complemental strand, 27663534 - 27663347
Alignment:
Q  1 ttgttaaaagggaactagtaaaattgaaatgatatatatgaatctccattccatggaatccgtgatagacaagaaaggaaaggccttcaagaagatgaca 100  Q
    ||||||||||||||||||||||||||||||||||||| |||||      || |||||| || | |   |||  || | ||||||||| |||||||||| |    
T  27663534 ttgttaaaagggaactagtaaaattgaaatgatatatctgaattgttcctcaatggaacccatca---acatcaatgaaaaggcctttaagaagatgaaa 27663438  T
Q  101 aaactcaaaacagttatcttcgaaaatggccatttttctggaggtctcaagcatttaccaagaagtttgagtgtattgaaatggaaaggat 191  Q
    |||||||||||| ||||| | ||||| ||| ||||||||  |||||||||| || | |||| ||||||||  |||||||||||||||||||    
T  27663437 aaactcaaaacacttatcattgaaaagggctatttttctaaaggtctcaagtatcttccaaaaagtttgatagtattgaaatggaaaggat 27663347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 169
Target Start/End: Original strand, 26960921 - 26961086
Alignment:
Q  1 ttgttaaaagggaactagtaaaattgaaatgatatatatgaa-tctccattccatggaatccgtgatagacaagaaaggaaaggccttcaagaagatgac 99  Q
    ||||||||||||||||||||||||||||||||||||| |||| |||||  || ||| || |||   |||||| ||| | |||||| ||||||||||||||    
T  26960921 ttgttaaaagggaactagtaaaattgaaatgatatatttgaattctcc-ctcaatgaaacccg---tagacatgaatgaaaaggcattcaagaagatgac 26961016  T
Q  100 aaaactcaaaacagttatcttcgaaaatggccatttttctggaggtctcaagcatttaccaagaagtttg 169  Q
    ||| ||||||||| ||||| | || || ||| ||||||||  ||||| |||| || | ||||| ||||||    
T  26961017 aaatctcaaaacacttatcattgagaaaggcaatttttctaaaggtcccaagtatcttccaagtagtttg 26961086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 77 - 191
Target Start/End: Original strand, 27216377 - 27216491
Alignment:
Q  77 ggaaaggccttcaagaagatgacaaaactcaaaacagttatcttcgaaaatggccatttttctggaggtctcaagcatttaccaagaagtttgagtgtat 176  Q
    ||||||||||||| |||||||| ||| ||||||||| ||||| | ||||||||||||||||||  ||||| |||  || | ||||| ||||||||  | |    
T  27216377 ggaaaggccttcacgaagatgaaaaatctcaaaacatttatcattgaaaatggccatttttctaaaggtcccaattatcttccaagtagtttgagatttt 27216476  T
Q  177 tgaaatggaaaggat 191  Q
     ||||||||||||||    
T  27216477 ggaaatggaaaggat 27216491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 65 - 185
Target Start/End: Original strand, 26850568 - 26850688
Alignment:
Q  65 atagacaagaaaggaaaggccttcaagaagatgacaaaactcaaaacagttatcttcgaaaatggccatttttctggaggtctcaagcatttaccaagaa 164  Q
    ||||||| ||| | |||||||||||||||||||||||| ||||||||| ||||| | ||| ||| | ||||||||  ||||| |||| || | || || |    
T  26850568 atagacatgaatgaaaaggccttcaagaagatgacaaatctcaaaacacttatcgttgaagatgacaatttttctaaaggtcccaagtatcttccgagta 26850667  T
Q  165 gtttgagtgtattgaaatgga 185  Q
    ||||||| |||||| ||||||    
T  26850668 gtttgagagtattggaatgga 26850688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 4 - 146
Target Start/End: Complemental strand, 27603038 - 27602896
Alignment:
Q  4 ttaaaagggaactagtaaaattgaaatgatatatatgaatctccattccatggaatccgtgatagacaagaaaggaaaggccttcaagaagatgacaaaa 103  Q
    ||||||||||||||| || |||||||||||| || |||||   |  || ||||||  ||| |||||   ||| ||||||||| | ||||||||||||||     
T  27603038 ttaaaagggaactaggaacattgaaatgatacatttgaattgtccctcaatggaaaacgtaatagagtggaatggaaaggccatgaagaagatgacaaat 27602939  T
Q  104 ctcaaaacagttatcttcgaaaatggccatttttctggaggtc 146  Q
    ||||||||| ||||| | |||||||| || |||||| ||||||    
T  27602938 ctcaaaacacttatcattgaaaatggtcagttttctagaggtc 27602896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 7 - 184
Target Start/End: Original strand, 26825668 - 26825845
Alignment:
Q  7 aaagggaactagtaaaattgaaatgatatatatgaatctccattccatggaatccgtgatagacaagaaaggaaaggccttcaagaagatgacaaaactc 106  Q
    |||||||||||||||| | |||||| ||||||||||| |||  |||| | || | || |||||   ||| |||||||| |||| |||||||||||| |||    
T  26825668 aaagggaactagtaaagtcgaaatgctatatatgaatttcccctccaagaaaactgtaatagattggaatggaaaggctttcatgaagatgacaaatctc 26825767  T
Q  107 aaaacagttatcttcgaaaatggccatttttctggaggtctcaagcatttaccaagaagtttgagtgtattgaaatgg 184  Q
    |||||| ||||  |  |||| ||||||||||||  |||||   || |  | ||||| |||||||| ||||||||||||    
T  26825768 aaaacacttattattaaaaagggccatttttctaaaggtccagagtacctcccaagtagtttgagagtattgaaatgg 26825845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 26951592 - 26951628
Alignment:
Q  1 ttgttaaaagggaactagtaaaattgaaatgatatat 37  Q
    |||||||||||||||||||||||||||||||||||||    
T  26951592 ttgttaaaagggaactagtaaaattgaaatgatatat 26951628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 26979231 - 26979267
Alignment:
Q  1 ttgttaaaagggaactagtaaaattgaaatgatatat 37  Q
    |||||||||||||||||||||||||||||||||||||    
T  26979231 ttgttaaaagggaactagtaaaattgaaatgatatat 26979267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 26637411 - 26637453
Alignment:
Q  1 ttgttaaaagggaactagtaaaattgaaatgatatatatgaat 43  Q
    ||||||||||||||||||||||||| ||||||||||| |||||    
T  26637411 ttgttaaaagggaactagtaaaattcaaatgatatatctgaat 26637453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 26743377 - 26743419
Alignment:
Q  1 ttgttaaaagggaactagtaaaattgaaatgatatatatgaat 43  Q
    ||||||||||||||||||||||||| ||||||||||| |||||    
T  26743377 ttgttaaaagggaactagtaaaattcaaatgatatatctgaat 26743419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 65 - 118
Target Start/End: Original strand, 26979299 - 26979352
Alignment:
Q  65 atagacaagaaaggaaaggccttcaagaagatgacaaaactcaaaacagttatc 118  Q
    ||||||| ||| | |||||| ||||||||||||||||| ||||||||| |||||    
T  26979299 atagacatgaatgaaaaggcattcaagaagatgacaaatctcaaaacacttatc 26979352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 27216301 - 27216342
Alignment:
Q  1 ttgttaaaagggaactagtaaaattgaaatgatatatatgaa 42  Q
    |||||||||||||||| | |||||||||||||||||| ||||    
T  27216301 ttgttaaaagggaacttggaaaattgaaatgatatatttgaa 27216342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 94; Significance: 5e-46; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 8 - 193
Target Start/End: Complemental strand, 17991540 - 17991355
Alignment:
Q  8 aagggaactagtaaaattgaaatgatatatatgaatctccattccatggaatccgtgatagacaagaaaggaaaggccttcaagaagatgacaaaactca 107  Q
    ||||||||||||||||||||||||||||||| |||| || |||||||| ||||||| | || |  ||| |||||||||||||||||||||| ||||||||    
T  17991540 aagggaactagtaaaattgaaatgatatatacgaatttcgattccatgaaatccgtaacagtctggaatggaaaggccttcaagaagatgaaaaaactca 17991441  T
Q  108 aaacagttatcttcgaaaatggccatttttctggaggtctcaagcatttaccaagaagtttgagtgtattgaaatggaaaggatgt 193  Q
    ||||| ||||| | ||||||| ||||||||||| ||||| |||| || | ||||  |||||||| |||||||||||||||||||||    
T  17991440 aaacacttatcattgaaaatgaccatttttctgaaggtcccaagtatcttccaaatagtttgagagtattgaaatggaaaggatgt 17991355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277 (Bit Score: 93; Significance: 2e-45; HSPs: 2)
Name: scaffold0277
Description:

Target: scaffold0277; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 6 - 198
Target Start/End: Complemental strand, 12014 - 11822
Alignment:
Q  6 aaaagggaactagtaaaattgaaatgatatatatgaatctccattccatggaatccgtgatagacaagaaaggaaaggccttcaagaagatgacaaaact 105  Q
    |||||||||||||||||||||||||||||||||||||| |||  ||   ||||| ||| ||||||||||||||||||||||||||||||||||||| |||    
T  12014 aaaagggaactagtaaaattgaaatgatatatatgaatttcccctctgaggaattcgtaatagacaagaaaggaaaggccttcaagaagatgacaagact 11915  T
Q  106 caaaacagttatcttcgaaaatggccatttttctggaggtctcaagcatttaccaagaagtttgagtgtattgaaatggaaaggatgtttatc 198  Q
     |||||  ||||| | ||||||||||||||||||  |||||||||| || | ||||| |||||||| ||||||||||   | |||||||||||    
T  11914 gaaaacgcttatcattgaaaatggccatttttctaaaggtctcaagtatcttccaagcagtttgagagtattgaaattacatggatgtttatc 11822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 6 - 182
Target Start/End: Complemental strand, 3051 - 2875
Alignment:
Q  6 aaaagggaactagtaaaattgaaatgatatatatgaatctccattccatggaatccgtgatagacaagaaaggaaaggccttcaagaagatgacaaaact 105  Q
    |||||||||||||||||||||||||||||||||||||| |||  ||   ||||| ||| ||||||||||||||||||||||||||||||||||||| |||    
T  3051 aaaagggaactagtaaaattgaaatgatatatatgaatttcccctctgaggaattcgtaatagacaagaaaggaaaggccttcaagaagatgacaagact 2952  T
Q  106 caaaacagttatcttcgaaaatggccatttttctggaggtctcaagcatttaccaagaagtttgagtgtattgaaat 182  Q
     |||||  ||||| | ||||||| ||||||||||  |||||||||| || | ||||| |||||||| ||||||||||    
T  2951 gaaaacgcttatcattgaaaatgtccatttttctaaaggtctcaagtatcttccaagcagtttgagagtattgaaat 2875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 91; Significance: 3e-44; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 1 - 191
Target Start/End: Complemental strand, 266691 - 266501
Alignment:
Q  1 ttgttaaaagggaactagtaaaattgaaatgatatatatgaatctccattccatggaatccgtgatagacaagaaaggaaaggccttcaagaagatgaca 100  Q
    |||||||||||||||||||||| |||||||||||||||||||| |||| || |||||| | || |||||| |||||||||||||||||||||||||||||    
T  266691 ttgttaaaagggaactagtaaagttgaaatgatatatatgaatttccactcgatggaacctgtaatagaccagaaaggaaaggccttcaagaagatgaca 266592  T
Q  101 aaactcaaaacagttatcttcgaaaatggccatttttctggaggtctcaagcatttaccaagaagtttgagtgtattgaaatggaaaggat 191  Q
    || ||||||||| || || | |||||||| |||||||||  |||||| ||| |  | | ||| |||||||  |||||||||||||||||||    
T  266591 aatctcaaaacacttgtcattgaaaatgggcatttttctaaaggtctgaagtaccttcgaagcagtttgaaagtattgaaatggaaaggat 266501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 112
Target Start/End: Complemental strand, 28131836 - 28131725
Alignment:
Q  1 ttgttaaaagggaactagtaaaattgaaatgatatatatgaatctccattccatggaatccgtgatagacaagaaaggaaaggccttcaagaagatgaca 100  Q
    |||||||||||||||| | |||||||||||||||| | | |||   || || |||||| |||| ||||||  |||  ||| |||||||||||||||| ||    
T  28131836 ttgttaaaagggaactggaaaaattgaaatgatatgtcttaattgtcactcaatggaacccgtaatagactggaatcgaatggccttcaagaagatgtca 28131737  T
Q  101 aaactcaaaaca 112  Q
    || || ||||||    
T  28131736 aatcttaaaaca 28131725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 28126017 - 28125981
Alignment:
Q  1 ttgttaaaagggaactagtaaaattgaaatgatatat 37  Q
    |||||||||||||||| |||| |||||||||||||||    
T  28126017 ttgttaaaagggaactggtaacattgaaatgatatat 28125981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1870 (Bit Score: 85; Significance: 1e-40; HSPs: 1)
Name: scaffold1870
Description:

Target: scaffold1870; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 6 - 182
Target Start/End: Original strand, 616 - 792
Alignment:
Q  6 aaaagggaactagtaaaattgaaatgatatatatgaatctccattccatggaatccgtgatagacaagaaaggaaaggccttcaagaagatgacaaaact 105  Q
    ||||||||||||| |||||||||||||||||||||||| |||  ||   ||||| ||| ||||||||||||||||||||||||||||||||||||| |||    
T  616 aaaagggaactagaaaaattgaaatgatatatatgaatttcccctctgaggaattcgtaatagacaagaaaggaaaggccttcaagaagatgacaagact 715  T
Q  106 caaaacagttatcttcgaaaatggccatttttctggaggtctcaagcatttaccaagaagtttgagtgtattgaaat 182  Q
     |||||  ||||| | ||||||| ||||||||||  |||||||||| || | ||||| |||||||| ||||||||||    
T  716 gaaaacgcttatcattgaaaatgaccatttttctaaaggtctcaagtatcttccaagcagtttgagagtattgaaat 792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0419 (Bit Score: 85; Significance: 1e-40; HSPs: 1)
Name: scaffold0419
Description:

Target: scaffold0419; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 6 - 182
Target Start/End: Original strand, 9335 - 9511
Alignment:
Q  6 aaaagggaactagtaaaattgaaatgatatatatgaatctccattccatggaatccgtgatagacaagaaaggaaaggccttcaagaagatgacaaaact 105  Q
    ||||||||||||| |||||||||||||||||||||||| |||  ||   ||||| ||| ||||||||||||||||||||||||||||||||||||| |||    
T  9335 aaaagggaactagaaaaattgaaatgatatatatgaatttcccctctgaggaattcgtaatagacaagaaaggaaaggccttcaagaagatgacaagact 9434  T
Q  106 caaaacagttatcttcgaaaatggccatttttctggaggtctcaagcatttaccaagaagtttgagtgtattgaaat 182  Q
     |||||  ||||| | ||||||| ||||||||||  |||||||||| || | ||||| |||||||| ||||||||||    
T  9435 gaaaacgcttatcattgaaaatgtccatttttctaaaggtctcaagtatcttccaagcagtttgagagtattgaaat 9511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 3 - 111
Target Start/End: Original strand, 61420 - 61528
Alignment:
Q  3 gttaaaagggaactagtaaaattgaaatgatatatatgaatctccattccatggaatccgtgatagacaagaaaggaaaggccttcaagaagatgacaaa 102  Q
    ||||||||||||| ||||||||||||||||||||||||||| | || || ||||||||||| ||||||||||| |||||||||||||||||||||||| |    
T  61420 gttaaaagggaaccagtaaaattgaaatgatatatatgaatttgcactctatggaatccgtaatagacaagaatggaaaggccttcaagaagatgacaca 61519  T
Q  103 actcaaaac 111  Q
     ||||||||    
T  61520 cctcaaaac 61528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 72; Significance: 7e-33; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 4 - 111
Target Start/End: Original strand, 18075613 - 18075720
Alignment:
Q  4 ttaaaagggaactagtaaaattgaaatgatatatatgaatctccattccatggaatccgtgatagacaagaaaggaaaggccttcaagaagatgacaaaa 103  Q
    |||||||||||| ||||||||||||||||||||||||||| | || || ||||||||||| ||||||||||| |||||||||||||||||||||||| |     
T  18075613 ttaaaagggaaccagtaaaattgaaatgatatatatgaatttgcactctatggaatccgtaatagacaagaatggaaaggccttcaagaagatgacacac 18075712  T
Q  104 ctcaaaac 111  Q
    ||||||||    
T  18075713 ctcaaaac 18075720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 2 - 194
Target Start/End: Complemental strand, 18677958 - 18677766
Alignment:
Q  2 tgttaaaagggaactagtaaaattgaaatgatatatatgaat-ctccattccatggaatccgtgatagacaagaaaggaaaggccttcaagaagatgaca 100  Q
    |||||||||||||| ||||||||||| ||||||||| ||||| |||| | | |||||    || ||||||  ||| |||||| |||||||||||||||||    
T  18677958 tgttaaaagggaacaagtaaaattgagatgatatatctgaattctccct-caatggatctggtaatagactggaatggaaagaccttcaagaagatgaca 18677860  T
Q  101 aaactcaaaacagttatcttcgaaaatggccatttttctggaggtctcaagcatttaccaagaagtttgagtgtattgaaatggaaaggatgtt 194  Q
    || ||||||||| ||||  | ||||||| |  |||||||  |||||||||| || | ||||| |||||||| |||||||||||||| |||||||    
T  18677859 aatctcaaaacacttattattgaaaatgtctctttttctaaaggtctcaagtatcttccaaggagtttgagagtattgaaatggaatggatgtt 18677766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 2 - 194
Target Start/End: Complemental strand, 18697800 - 18697608
Alignment:
Q  2 tgttaaaagggaactagtaaaattgaaatgatatatatgaat-ctccattccatggaatccgtgatagacaagaaaggaaaggccttcaagaagatgaca 100  Q
    |||||||||||||| ||||||||||| ||||||||| ||| | |||| | | | |||  |||| ||||||  ||| ||||||||||||||||||||||||    
T  18697800 tgttaaaagggaacaagtaaaattgagatgatatatctgagttctccct-caacggatcccgtaatagactggaatggaaaggccttcaagaagatgaca 18697702  T
Q  101 aaactcaaaacagttatcttcgaaaatggccatttttctggaggtctcaagcatttaccaagaagtttgagtgtattgaaatggaaaggatgtt 194  Q
    || ||||||||| ||||  | ||||||| |  |||||||  || || |||| || | ||||| |||||||| |||||||||| ||| |||||||    
T  18697701 aatctcaaaacacttattattgaaaatgtctctttttctaaagatcccaagtatcttccaagcagtttgagagtattgaaattgaatggatgtt 18697608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 2 - 194
Target Start/End: Complemental strand, 18653876 - 18653684
Alignment:
Q  2 tgttaaaagggaactagtaaaattgaaatgatatatatgaat-ctccattccatggaatccgtgatagacaagaaaggaaaggccttcaagaagatgaca 100  Q
    |||||||||||||| ||||||||||| ||||||||| ||||| |||| | | |||||    || ||||||  ||| ||||||||||||||||||||||||    
T  18653876 tgttaaaagggaacaagtaaaattgagatgatatatctgaattctccct-caatggatctggtaatagactggaatggaaaggccttcaagaagatgaca 18653778  T
Q  101 aaactcaaaacagttatcttcgaaaatggccatttttctggaggtctcaagcatttaccaagaagtttgagtgtattgaaatggaaaggatgtt 194  Q
    || ||||||||| ||||  |  |||||| |  |||||||  || || |||| || | ||||| |||||||| |||||||||| ||| |||||||    
T  18653777 aatctcaaaacacttattattaaaaatgtctctttttctaaagatcccaagtatcttccaagcagtttgagagtattgaaattgaatggatgtt 18653684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 2 - 194
Target Start/End: Complemental strand, 18729894 - 18729702
Alignment:
Q  2 tgttaaaagggaactagtaaaattgaaatgatatatatgaat-ctccattccatggaatccgtgatagacaagaaaggaaaggccttcaagaagatgaca 100  Q
    |||||||||||||| ||||||||||| ||||||||| ||||| |||| | | |||||    || ||||||  ||| |||||||| |||||||||||||||    
T  18729894 tgttaaaagggaacaagtaaaattgagatgatatatctgaattctccct-caatggatctggtaatagactggaatggaaaggctttcaagaagatgaca 18729796  T
Q  101 aaactcaaaacagttatcttcgaaaatggccatttttctggaggtctcaagcatttaccaagaagtttgagtgtattgaaatggaaaggatgtt 194  Q
    || ||||||||| ||||  |  |||||| | ||||||||  || || |||| || | ||||| |||||||| |||||||||| ||| |||||||    
T  18729795 aatctcaaaacacttattattaaaaatgtctatttttctaaagatcccaagtatcttccaagcagtttgagagtattgaaattgaatggatgtt 18729702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 2 - 182
Target Start/End: Complemental strand, 18722472 - 18722292
Alignment:
Q  2 tgttaaaagggaactagtaaaattgaaatgatatatatgaatctccattccatggaatccgtgatagacaagaaaggaaaggccttcaagaagatgacaa 101  Q
    |||||||||||||| ||||||||||| ||||||||| |||||   |  || | |||  |||| ||||||  ||| |||||||||||||||||||||||||    
T  18722472 tgttaaaagggaacaagtaaaattgagatgatatatctgaattctcgctcaacggatcccgtaatagactggaatggaaaggccttcaagaagatgacaa 18722373  T
Q  102 aactcaaaacagttatcttcgaaaatggccatttttctggaggtctcaagcatttaccaagaagtttgagtgtattgaaat 182  Q
    | ||||||||| ||||  |  |||||| |  |||||||  || || |||| || | ||||| |||||||| ||||||||||    
T  18722372 atctcaaaacacttattattaaaaatgtctctttttctaaagatcccaagtatcttccaagcagtttgagagtattgaaat 18722292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 2 - 194
Target Start/End: Complemental strand, 18688012 - 18687820
Alignment:
Q  2 tgttaaaagggaactagtaaaattgaaatgatatatatgaa-tctccattccatggaatccgtgatagacaagaaaggaaaggccttcaagaagatgaca 100  Q
    |||||||||||||| ||||||||||| ||||||||| |||| |||||  || |||||    || ||||||  ||| |||||||| |||||||||||||||    
T  18688012 tgttaaaagggaacaagtaaaattgagatgatatatctgaattctcc-ctcaatggatctggtaatagactggaatggaaaggctttcaagaagatgaca 18687914  T
Q  101 aaactcaaaacagttatcttcgaaaatggccatttttctggaggtctcaagcatttaccaagaagtttgagtgtattgaaatggaaaggatgtt 194  Q
    || ||||||||| ||||  |  |||||| |  |||| ||  || || |||| || | ||||| |||||||| |||||||||| ||| |||||||    
T  18687913 aatctcaaaacacttattattaaaaatgtctcttttactaaagatcccaagtatcttccaagcagtttgagagtattgaaattgaatggatgtt 18687820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349 (Bit Score: 62; Significance: 7e-27; HSPs: 1)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 142 - 223
Target Start/End: Original strand, 15251 - 15332
Alignment:
Q  142 aggtctcaagcatttaccaagaagtttgagtgtattgaaatggaaaggatgtttatcgaagtgtctgtcatctagtatttta 223  Q
    |||||||||| || | ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  15251 aggtctcaagtatcttccaagcagtttgagtgtattgaaatggaaaggatgtttatcgaagtgtctgtcatctaggatttta 15332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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