View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8804_high_13 (Length: 241)
Name: NF8804_high_13
Description: NF8804
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8804_high_13 |
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Alignment Details
Target: chr4 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 55016392 - 55016615
Alignment:
| Q |
1 |
taattaactctctttgaccatttatgtcgaaaatataaacaaaaattggtcaaataaagttaatgtgcttgtctagattaaacatcaacnnnnnnnnnaa |
100 |
Q |
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| T |
55016392 |
taattaactctctttgaccatttatgtcgaaaatataaacaaaaattggtcaaataaagttaatgtgcttgtctagattaaacatcaactttttttt-aa |
55016490 |
T |
|
| Q |
101 |
ttaatctttgcatatgtttgagaccaaattaaaatttgttataagtattttaaagaatattgaactaattctaattaatatgcaactatatgtgacaggt |
200 |
Q |
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| T |
55016491 |
ttaatctttgcatatgtttgagaccaaattaaaatttgttatatgtattttaaagaatattgaactaattctaattaatatgcaactatatgtgacaggt |
55016590 |
T |
|
| Q |
201 |
gagtgccattggtgctgcttatgtg |
225 |
Q |
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| T |
55016591 |
gagtgccattggtgctgcttatgtg |
55016615 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 66
Target Start/End: Complemental strand, 7974890 - 7974854
Alignment:
| Q |
30 |
aaaatataaacaaaaattggtcaaataaagttaatgt |
66 |
Q |
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| T |
7974890 |
aaaatataaacaaaaattggtcaataaaagttaatgt |
7974854 |
T |
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