View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8804_high_14 (Length: 241)
Name: NF8804_high_14
Description: NF8804
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8804_high_14 |
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Alignment Details
Target: chr4 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 15 - 221
Target Start/End: Original strand, 28036176 - 28036382
Alignment:
| Q |
15 |
ttggtgttggtgttgctagccataactagagaatgtaaggaggacatgttttgtttgtttgtaatagaatacttactatgttcttgaatggtttcaaaag |
114 |
Q |
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| T |
28036176 |
ttggtgttggtgttgctagccataacaagagaatgtaaggaggacatgttttgtttgttggtaatagaatacttactatgttcttgaatggtttcaaaag |
28036275 |
T |
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| Q |
115 |
caagatgactaacaagcaaacgaatagcattattctgagcaaaatgatcttgacattttggatgatgtgctgcaagttctgaaatagcccaagcaacaac |
214 |
Q |
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| T |
28036276 |
caagatgactaacaagcaaacgaatagcattattctgagcaaaatgatcttgacattttggatgatgtgctgcaagttctgaaatagcccaagcaacaac |
28036375 |
T |
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| Q |
215 |
tatttga |
221 |
Q |
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||||||| |
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| T |
28036376 |
tatttga |
28036382 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 77 - 214
Target Start/End: Complemental strand, 8756910 - 8756773
Alignment:
| Q |
77 |
aatagaatacttactatgttcttgaatggtttcaaaagcaagatgactaacaagcaaacgaatagcattattctgagcaaaatgatcttgacattttgga |
176 |
Q |
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| T |
8756910 |
aatagcatacttactatgttcctcaacagtttcaaaagctaaatgaccaacaagcaacctaataatattatgctgagcaaaaagttcctgacatttagga |
8756811 |
T |
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| Q |
177 |
tgatgtgctgcaagttctgaaatagcccaagcaacaac |
214 |
Q |
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| T |
8756810 |
taattagcagcaagttcagaaacagcccaagcaacaac |
8756773 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 87 - 177
Target Start/End: Original strand, 32031502 - 32031592
Alignment:
| Q |
87 |
ttactatgttcttgaatggtttcaaaagcaagatgactaacaagcaaacgaatagcattattctgagcaaaatgatcttgacattttggat |
177 |
Q |
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|||||||||||||||| ||||||||||||| ||||| |||||||| | || | ||||| |||||||||| |||||||||||| |||| |
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| T |
32031502 |
ttactatgttcttgaacagtttcaaaagcaatgtgactcacaagcaacctaacaatattatgctgagcaaaaacatcttgacatttaggat |
32031592 |
T |
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