View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8804_high_6 (Length: 357)
Name: NF8804_high_6
Description: NF8804
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8804_high_6 |
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Alignment Details
Target: chr2 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 14 - 341
Target Start/End: Complemental strand, 39294289 - 39293960
Alignment:
| Q |
14 |
agaacaataatctcaacaaagcaatcagtctaaagtggttaataagatctacnnnnnnnt-aaatatgaacttagtttccgtgtgaaataattattgatc |
112 |
Q |
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| T |
39294289 |
agaacaataatctcaacaaaacaatcagtctaaagtgattaataagatccaccaaaaaaacaaatattaacttagttttcatgtgaaataattattaatc |
39294190 |
T |
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| Q |
113 |
cgattttacttatcttttgctgaactccagattatcagaccatttttctttaaaatctagagaattagaaagaaagnnnnnnn-gttatttcatgctcaa |
211 |
Q |
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| T |
39294189 |
cgattttatttatctcttgctgaactccagattatcagaccatttttctttaaaatctagagaattagaaagaaaaaaaaaaaagttattacatgctcaa |
39294090 |
T |
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| Q |
212 |
agatgttcaaagttacgttccttgctgattatgagacaccctggaggtactctaaagaggatcagccgaacagatgcaagccgaaattaactgaaaggaa |
311 |
Q |
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| T |
39294089 |
agatgttcaaagttacgttccttgctgattatgagacaccctggaggtgctctaaagaggatcagccgaacacatgcaagccgaaattaactgaaaggaa |
39293990 |
T |
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| Q |
312 |
aaagatgatgaccgaacagtatctgtggca |
341 |
Q |
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| T |
39293989 |
aaagatgataaccgaacagtatctgtggca |
39293960 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 98 - 131
Target Start/End: Original strand, 40384909 - 40384942
Alignment:
| Q |
98 |
aaataattattgatccgattttacttatcttttg |
131 |
Q |
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| T |
40384909 |
aaataattattgatcagattttacttatcttttg |
40384942 |
T |
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