View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8804_low_1 (Length: 629)

Name: NF8804_low_1
Description: NF8804
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8804_low_1
NF8804_low_1
[»] chr8 (25 HSPs)
chr8 (60-264)||(38815197-38815402)
chr8 (69-241)||(3187882-3188053)
chr8 (94-264)||(6592513-6592683)
chr8 (69-264)||(39434579-39434775)
chr8 (94-234)||(6618222-6618361)
chr8 (71-202)||(3821138-3821270)
chr8 (96-235)||(24124967-24125106)
chr8 (69-204)||(22589396-22589531)
chr8 (114-264)||(35739985-35740136)
chr8 (83-234)||(25021844-25021995)
chr8 (81-234)||(37514145-37514298)
chr8 (69-150)||(42659139-42659220)
chr8 (69-117)||(24320249-24320297)
chr8 (66-113)||(500151-500198)
chr8 (69-190)||(18804525-18804646)
chr8 (88-142)||(24451051-24451105)
chr8 (95-204)||(43823927-43824037)
chr8 (81-134)||(8882268-8882321)
chr8 (82-178)||(9259377-9259474)
chr8 (83-155)||(8540489-8540561)
chr8 (82-204)||(121780-121903)
chr8 (136-264)||(500207-500335)
chr8 (104-189)||(39671246-39671332)
chr8 (66-155)||(4699780-4699868)
chr8 (68-109)||(8619733-8619774)
[»] chr7 (31 HSPs)
chr7 (69-264)||(21326837-21327033)
chr7 (81-264)||(27521395-27521579)
chr7 (99-241)||(19277235-19277377)
chr7 (89-264)||(4501191-4501366)
chr7 (71-235)||(43856788-43856952)
chr7 (82-268)||(24527514-24527701)
chr7 (71-264)||(28517286-28517480)
chr7 (61-234)||(22197891-22198063)
chr7 (61-234)||(22239758-22239930)
chr7 (70-235)||(30216087-30216252)
chr7 (70-235)||(48539094-48539259)
chr7 (69-264)||(982861-983057)
chr7 (86-264)||(10905047-10905225)
chr7 (71-241)||(40726503-40726673)
chr7 (68-264)||(32584511-32584709)
chr7 (71-157)||(41117877-41117963)
chr7 (81-235)||(5825197-5825351)
chr7 (70-204)||(5972275-5972410)
chr7 (81-154)||(23037469-23037542)
chr7 (81-241)||(45613865-45614025)
chr7 (83-157)||(25187038-25187112)
chr7 (69-151)||(45003010-45003092)
chr7 (78-146)||(36558985-36559053)
chr7 (140-234)||(9281161-9281255)
chr7 (140-234)||(9292132-9292226)
chr7 (70-133)||(27027761-27027824)
chr7 (69-123)||(2904292-2904346)
chr7 (60-153)||(43333941-43334034)
chr7 (71-145)||(34772696-34772770)
chr7 (70-124)||(42295324-42295378)
chr7 (96-124)||(45974739-45974767)
[»] chr3 (29 HSPs)
chr3 (81-268)||(53785633-53785821)
chr3 (69-264)||(39583228-39583424)
chr3 (69-264)||(26772670-26772866)
chr3 (69-262)||(32546707-32546901)
chr3 (69-264)||(44198679-44198875)
chr3 (117-241)||(52741535-52741659)
chr3 (68-235)||(26856791-26856958)
chr3 (81-234)||(3443342-3443495)
chr3 (82-235)||(38145981-38146134)
chr3 (68-241)||(13582421-13582593)
chr3 (69-241)||(37133022-37133194)
chr3 (81-241)||(38670903-38671063)
chr3 (66-241)||(52411914-52412089)
chr3 (70-204)||(7502071-7502204)
chr3 (96-204)||(21552603-21552716)
chr3 (72-235)||(5338561-5338721)
chr3 (83-157)||(42205993-42206067)
chr3 (60-133)||(4669794-4669867)
chr3 (70-264)||(46940769-46940967)
chr3 (89-172)||(4763884-4763967)
chr3 (71-190)||(25324943-25325063)
chr3 (89-235)||(7900790-7900936)
chr3 (66-204)||(38978858-38978997)
chr3 (66-155)||(25094681-25094770)
chr3 (102-157)||(44781-44836)
chr3 (66-120)||(7257700-7257754)
chr3 (84-158)||(25190040-25190114)
chr3 (70-115)||(465030-465075)
chr3 (70-119)||(26276528-26276577)
[»] chr2 (19 HSPs)
chr2 (69-264)||(4413065-4413261)
chr2 (69-268)||(17344550-17344750)
chr2 (81-264)||(41867907-41868091)
chr2 (69-241)||(9685438-9685610)
chr2 (69-264)||(27502274-27502470)
chr2 (89-204)||(44686348-44686464)
chr2 (68-204)||(13413262-13413399)
chr2 (69-235)||(28224912-28225078)
chr2 (115-235)||(20142754-20142874)
chr2 (78-119)||(26407839-26407880)
chr2 (83-264)||(5532347-5532527)
chr2 (60-201)||(7760907-7761049)
chr2 (81-182)||(16351925-16352027)
chr2 (69-261)||(18744956-18745149)
chr2 (60-201)||(3825629-3825771)
chr2 (82-167)||(19161879-19161965)
chr2 (68-241)||(32029109-32029282)
chr2 (71-182)||(8036563-8036677)
chr2 (98-235)||(33612576-33612711)
[»] chr5 (17 HSPs)
chr5 (55-264)||(15292025-15292234)
chr5 (70-241)||(13166933-13167104)
chr5 (68-264)||(37873637-37873834)
chr5 (69-242)||(430514-430687)
chr5 (71-241)||(32269820-32269990)
chr5 (81-264)||(35310372-35310556)
chr5 (88-264)||(25663031-25663208)
chr5 (70-261)||(42921611-42921802)
chr5 (69-157)||(2566202-2566290)
chr5 (93-264)||(33692054-33692225)
chr5 (68-153)||(23023506-23023591)
chr5 (94-185)||(22188733-22188825)
chr5 (88-241)||(38875570-38875722)
chr5 (81-158)||(16017097-16017174)
chr5 (89-157)||(19260236-19260304)
chr5 (78-112)||(43349981-43350015)
chr5 (81-146)||(15809973-15810038)
[»] chr4 (33 HSPs)
chr4 (69-235)||(3329908-3330074)
chr4 (71-203)||(4419177-4419310)
chr4 (70-241)||(50000948-50001120)
chr4 (69-264)||(53619498-53619694)
chr4 (69-204)||(25504207-25504343)
chr4 (71-264)||(55933461-55933653)
chr4 (69-204)||(53170424-53170561)
chr4 (81-241)||(56462129-56462289)
chr4 (84-187)||(16955387-16955491)
chr4 (71-264)||(600691-600885)
chr4 (82-263)||(34107694-34107878)
chr4 (82-235)||(7536600-7536753)
chr4 (70-156)||(23242813-23242899)
chr4 (96-241)||(132324-132469)
chr4 (21-155)||(8738069-8738203)
chr4 (60-200)||(26521392-26521532)
chr4 (88-152)||(18981651-18981714)
chr4 (69-204)||(39001309-39001445)
chr4 (66-149)||(23233229-23233312)
chr4 (136-261)||(43849350-43849476)
chr4 (99-255)||(6865828-6865984)
chr4 (81-142)||(48657037-48657098)
chr4 (81-157)||(23255637-23255713)
chr4 (69-157)||(30940839-30940927)
chr4 (89-204)||(38535628-38535744)
chr4 (82-155)||(49344248-49344325)
chr4 (69-133)||(50442610-50442674)
chr4 (140-235)||(50483225-50483320)
chr4 (83-118)||(1041351-1041386)
chr4 (82-204)||(46440948-46441071)
chr4 (70-157)||(50464403-50464490)
chr4 (139-204)||(53098403-53098469)
chr4 (70-155)||(45661604-45661689)
[»] chr1 (20 HSPs)
chr1 (71-264)||(34644480-34644674)
chr1 (69-241)||(22346807-22346979)
chr1 (60-264)||(2764382-2764587)
chr1 (69-268)||(21472915-21473115)
chr1 (117-268)||(29169788-29169940)
chr1 (60-264)||(31737322-31737526)
chr1 (60-204)||(2898605-2898750)
chr1 (81-204)||(24177570-24177694)
chr1 (94-241)||(38731546-38731693)
chr1 (94-268)||(45659643-45659816)
chr1 (69-264)||(28041126-28041322)
chr1 (97-203)||(20259857-20259964)
chr1 (83-235)||(4862018-4862170)
chr1 (81-150)||(40515989-40516057)
chr1 (71-157)||(6670212-6670298)
chr1 (69-204)||(47459594-47459730)
chr1 (69-124)||(4611101-4611156)
chr1 (94-204)||(7213187-7213298)
chr1 (68-123)||(30688468-30688523)
chr1 (70-112)||(45835338-45835380)
[»] chr6 (13 HSPs)
chr6 (69-264)||(17249304-17249500)
chr6 (69-158)||(32115630-32115719)
chr6 (82-241)||(959506-959664)
chr6 (69-241)||(34304408-34304580)
chr6 (66-149)||(3137362-3137445)
chr6 (81-235)||(33220740-33220894)
chr6 (72-258)||(29338084-29338271)
chr6 (70-268)||(28625844-28626043)
chr6 (72-241)||(4206619-4206788)
chr6 (71-234)||(24016251-24016414)
chr6 (72-241)||(4165945-4166114)
chr6 (81-264)||(357716-357899)
chr6 (129-241)||(45700-45812)
[»] scaffold0490 (1 HSPs)
scaffold0490 (102-268)||(6279-6446)
[»] scaffold0009 (1 HSPs)
scaffold0009 (69-260)||(103018-103209)
[»] scaffold0148 (1 HSPs)
scaffold0148 (61-241)||(33154-33334)
[»] scaffold0470 (1 HSPs)
scaffold0470 (94-234)||(7540-7679)
[»] scaffold1768 (1 HSPs)
scaffold1768 (66-231)||(217-382)
[»] scaffold0361 (1 HSPs)
scaffold0361 (73-153)||(17390-17468)
[»] scaffold0186 (1 HSPs)
scaffold0186 (136-233)||(10340-10436)
[»] scaffold0493 (1 HSPs)
scaffold0493 (136-254)||(8525-8644)


Alignment Details
Target: chr8 (Bit Score: 83; Significance: 5e-39; HSPs: 25)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 60 - 264
Target Start/End: Original strand, 38815197 - 38815402
Alignment:
Q  60 gccgcgaagcctttttgaatagcaaaatcaatcatcgtaaacacaacattcatgaacctaggagaaattacatttctatgcatgaccctttgaactct-t 158  Q
    ||||| ||||||||||| || | |||| ||||| |||||||||||||||||||| |||||||||| || ||||| ||||||||||||||||||||||| |    
T  38815197 gccgctaagcctttttggatggaaaaaccaatcctcgtaaacacaacattcatggacctaggagacatgacattgctatgcatgaccctttgaactctat 38815296  T
Q  159 gtaaaaggtccacaatctctgatgctaggaaactaaaagtgtcaaagcgcaaattgtttaaaagcatgttgattgtctgaaca-tttttctcgtgtttgg 257  Q
    ||| |||||| |||  ||||| ||||||||| |  |||||||||||  |||||| || ||||||||||||||||||| |||||   |||||| |||||||    
T  38815297 gtagaaggtcaacaccctctggtgctaggaagcggaaagtgtcaaa-agcaaatggtataaaagcatgttgattgtcagaacacgctttctcatgtttgg 38815395  T
Q  258 ccacttt 264  Q
    |||||||    
T  38815396 ccacttt 38815402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 69 - 241
Target Start/End: Original strand, 3187882 - 3188053
Alignment:
Q  69 cctttttgaatagcaaaatcaatcatcgtaaacacaacattcatgaacctaggagaaattacatttctatgcatgaccctttgaactct-tgtaaaaggt 167  Q
    |||||||| || |||||| ||||  |||||||||||||||||||| |||||||||| || ||||| |||||||| |||||||| ||||| |||| |||||    
T  3187882 cctttttggatggcaaaaccaattctcgtaaacacaacattcatggacctaggagacataacattgctatgcataaccctttg-actctatgtagaaggt 3187980  T
Q  168 ccacaatctctgatgctaggaaactaaaagtgtcaaagcgcaaattgtttaaaagcatgttgattgtctgaaca 241  Q
      |||| ||||||||||||||| |  ||||| |||||  |||||| || ||||||||||||||||||| |||||    
T  3187981 taacaacctctgatgctaggaagccgaaagtttcaaa-agcaaatggtataaaagcatgttgattgtcagaaca 3188053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 94 - 264
Target Start/End: Original strand, 6592513 - 6592683
Alignment:
Q  94 tcgtaaacacaacattcatgaacctaggagaaattacatttctatgcatgaccctttgaactct-tgtaaaaggtccacaatctctgatgctaggaaact 192  Q
    |||||||||||||||||||||||||| |||| || ||| || ||||||||||| |||||||||| || | |||||| |||| |||||  |||||||||||    
T  6592513 tcgtaaacacaacattcatgaacctatgagacatgaca-ttatatgcatgaccttttgaactctatgcagaaggtcaacaacctctggagctaggaaact 6592611  T
Q  193 aaaagtgtcaaagcgcaaattgtttaaaagcatgttgattgtctgaaca-tttttctcgtgtttggccacttt 264  Q
     |||||||||||  |||||| |||||||| ||||||||||||  |||||   |||||| ||||||||||||||    
T  6592612 gaaagtgtcaaa-agcaaatggtttaaaatcatgttgattgtgagaacacgctttctcatgtttggccacttt 6592683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 69 - 264
Target Start/End: Original strand, 39434579 - 39434775
Alignment:
Q  69 cctttttgaatagcaaaatcaatcatcgtaaacacaacattcatgaacctaggagaaattacatttctatgcatgaccctttgaactct-tgtaaaaggt 167  Q
    |||||||| || |||||||||||| |||||||||||||||||||| | ||| |||| ||||||||  ||||||| |||||||| ||||| |||| ||| |    
T  39434579 cctttttggatggcaaaatcaatcctcgtaaacacaacattcatggatctaagagacattacattgatatgcataaccctttggactctatgtagaagat 39434678  T
Q  168 ccacaatctctgatgctaggaaactaaaagtgtcaaagcgcaaattgtttaaaagcatgttgattgtctgaaca-tttttctcgtgtttggccacttt 264  Q
    | |    |||||||||||||||   ||||||||||||   ||||| || ||||||||||||||||||| |||||   |||||| ||||||||||||||    
T  39434679 caaatgcctctgatgctaggaagtcaaaagtgtcaaa-aacaaatggtataaaagcatgttgattgtcagaacacgctttctcatgtttggccacttt 39434775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 94 - 234
Target Start/End: Original strand, 6618222 - 6618361
Alignment:
Q  94 tcgtaaacacaacattcatgaacctaggagaaattacatttctatgcatgaccctttgaactct-tgtaaaaggtccacaatctctgatgctaggaaact 192  Q
    ||||||||| |||||||||| ||||| |||| || |||||  ||||||||||| ||||||| || || |||||||| ||||||||||  |||||||||||    
T  6618222 tcgtaaacataacattcatggacctatgagacatgacatta-tatgcatgaccttttgaacgctatgcaaaaggtcaacaatctctggagctaggaaact 6618320  T
Q  193 aaaagtgtcaaagcgcaaattgtttaaaagcatgttgattgt 234  Q
     |||||||||||  |||||| |||||||| ||||||||||||    
T  6618321 gaaagtgtcaaa-agcaaatggtttaaaatcatgttgattgt 6618361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 71 - 202
Target Start/End: Original strand, 3821138 - 3821270
Alignment:
Q  71 tttttgaatagcaaaatcaatcatcgtaaacacaacattcatgaacctaggagaaattacatttctatgcatgaccctttgaactct-tgtaaaaggtcc 169  Q
    ||||| ||| |||| ||||||| ||||||||| |||||| |||||||||||||| || ||||| |||||||| |||||||||||||| |||| ||||||     
T  3821138 tttttaaattgcaatatcaatcctcgtaaacataacatttatgaacctaggagacatgacattgctatgcattaccctttgaactctatgtagaaggtca 3821237  T
Q  170 acaatctctgatgctaggaaactaaaagtgtca 202  Q
    |||| ||||| | ||||||  | ||||||||||    
T  3821238 acaacctctggttctaggatgccaaaagtgtca 3821270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 96 - 235
Target Start/End: Original strand, 24124967 - 24125106
Alignment:
Q  96 gtaaacacaacattcatgaacctaggagaaattacatttctatgcatgaccctttgaactct-tgtaaaaggtccacaatctctgatgctaggaaactaa 194  Q
    |||||||||||||||||| ||||| |||| || ||||| |||||||||||| |||||||| | |||| |||| | |||| ||||| ||||||||||  ||    
T  24124967 gtaaacacaacattcatggacctatgagacatgacattgctatgcatgaccttttgaactttatgtagaaggccaacaacctctggtgctaggaaatcaa 24125066  T
Q  195 aagtgtcaaagcgcaaattgtttaaaagcatgttgattgtc 235  Q
    || |||||||  |||||| || |||||||||||||||||||    
T  24125067 aattgtcaaa-agcaaatggtataaaagcatgttgattgtc 24125106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 69 - 204
Target Start/End: Complemental strand, 22589531 - 22589396
Alignment:
Q  69 cctttttgaatagcaaaatcaatcatcgtaaacacaacattcatgaacctaggagaaattacatttctatgcatgaccctttgaactct-tgtaaaaggt 167  Q
    |||||||| || |||||| ||||| |||| ||||||||||||||  ||||| |||| || ||||| |||||||||||| |||||||||| ||||||| ||    
T  22589531 cctttttggatggcaaaaccaatcctcgtgaacacaacattcatagacctatgagacatgacattgctatgcatgaccttttgaactctatgtaaaa-gt 22589433  T
Q  168 ccacaatctctgatgctaggaaactaaaagtgtcaaa 204  Q
    | |||  ||||| |||||||||||  |||||||||||    
T  22589432 caacagcctctggtgctaggaaaccgaaagtgtcaaa 22589396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 114 - 264
Target Start/End: Complemental strand, 35740136 - 35739985
Alignment:
Q  114 aacctaggagaaattacatttctatgcatgaccctttgaactct-tgtaaaaggtccacaatctctgatgctaggaaactaaaagtgtcaaagcgcaaat 212  Q
    |||||||| || || |||||  ||||||||||  |||||||||| |||| |||||| |||||||||| |||||||||||| |||||||||||  || |||    
T  35740136 aacctaggggacatgacattgttatgcatgactttttgaactctatgtagaaggtcaacaatctctggtgctaggaaactgaaagtgtcaaaa-gctaat 35740038  T
Q  213 tgtttaaaagcatgttgattgtctgaacatt-tttctcgtgtttggccacttt 264  Q
    ||| ||||| ||||||||||||| ||||    |||||| ||||||||||||||    
T  35740037 tgtataaaaacatgttgattgtcagaacccgctttctcatgtttggccacttt 35739985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 83 - 234
Target Start/End: Complemental strand, 25021995 - 25021844
Alignment:
Q  83 aaaatcaatcatcgtaaacacaacattcatgaacctaggagaaattacatttctatgcatgaccctttgaactct-tgtaaaaggtccacaatctctgat 181  Q
    |||||||||||| ||||||||||||||| || |||||||||| || |||||  | |||||||||||||||||| | |||  | |||| |||| ||||| |    
T  25021995 aaaatcaatcattgtaaacacaacattcctggacctaggagatatgacattgttgtgcatgaccctttgaactttgtgtggatggtcaacaacctctggt 25021896  T
Q  182 gctaggaaactaaaagtgtcaaagcgcaaattgtttaaaagcatgttgattgt 234  Q
    |||||||| | |||| |||||||  | |||| || ||||| ||||||||||||    
T  25021895 gctaggaagccaaaaatgtcaaa-agaaaatggtataaaaacatgttgattgt 25021844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 81 - 234
Target Start/End: Original strand, 37514145 - 37514298
Alignment:
Q  81 gcaaaatcaatcatcgtaaacacaacattcatgaacctaggagaaattacatttctatgcatgaccctttgaactct-tgtaaaaggtccacaatctctg 179  Q
    |||| ||||||| |||| || |||||||||||| ||||| ||||  | |||||  ||||||||||| |||||||||| |||| |||||| |||  |||||    
T  37514145 gcaagatcaatcctcgtgaatacaacattcatggacctaagagacgtaacattgatatgcatgaccttttgaactctatgtagaaggtcaacagcctctg 37514244  T
Q  180 atgctaggaaactaaaagtgtcaaagcgcaaattgtttaaaagcatgttgattgt 234  Q
      ||||||||| | |||||||||||  |||||| || |||| |||||||||||||    
T  37514245 gcgctaggaaattgaaagtgtcaaa-agcaaatagtataaacgcatgttgattgt 37514298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 69 - 150
Target Start/End: Original strand, 42659139 - 42659220
Alignment:
Q  69 cctttttgaatagcaaaatcaatcatcgtaaacacaacattcatgaacctaggagaaattacatttctatgcatgacccttt 150  Q
    |||||||| ||  |||||| |||| ||||||||||||||||||||||||||| ||| || | ||| |||||||| |||||||    
T  42659139 cctttttggatgacaaaattaatcctcgtaaacacaacattcatgaacctagaagacataatattgctatgcataacccttt 42659220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 69 - 117
Target Start/End: Original strand, 24320249 - 24320297
Alignment:
Q  69 cctttttgaatagcaaaatcaatcatcgtaaacacaacattcatgaacc 117  Q
    |||||||| ||| ||||||||||| ||||||||||||||||||||||||    
T  24320249 cctttttggatatcaaaatcaatcctcgtaaacacaacattcatgaacc 24320297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 66 - 113
Target Start/End: Original strand, 500151 - 500198
Alignment:
Q  66 aagcctttttgaatagcaaaatcaatcatcgtaaacacaacattcatg 113  Q
    |||||||||||||| | |||||||||| ||||||||||||||||||||    
T  500151 aagcctttttgaatggtaaaatcaatcctcgtaaacacaacattcatg 500198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 69 - 190
Target Start/End: Original strand, 18804525 - 18804646
Alignment:
Q  69 cctttttgaatagcaaaatcaatcatcgtaaacacaacattcatgaacctaggagaaattacatttctatgcatgaccctttgaactct-tgtaaaaggt 167  Q
    |||||||| || |||||| ||||| ||||||||| |||| || ||||||||||||  || |||||  ||||||||||| |||||| ||| |||| |||||    
T  18804525 cctttttggatggcaaaaccaatcctcgtaaacaaaacactc-tgaacctaggagtcatgacattgttatgcatgaccttttgaaatctatgtagaaggt 18804623  T
Q  168 ccacaatctctgatgctaggaaa 190  Q
    | |||  ||||| ||||||||||    
T  18804624 caacagcctctggtgctaggaaa 18804646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 88 - 142
Target Start/End: Original strand, 24451051 - 24451105
Alignment:
Q  88 caatcatcgtaaacacaacattcatgaacctaggagaaattacatttctatgcat 142  Q
    |||||||||| ||||||||||||||| |||||||||| || ||||| ||||||||    
T  24451051 caatcatcgtgaacacaacattcatggacctaggagacatgacattgctatgcat 24451105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 95 - 204
Target Start/End: Original strand, 43823927 - 43824037
Alignment:
Q  95 cgtaaacacaacattcatgaacctaggagaaattacatttctatgcatgaccctttgaactct-tgtaaaaggtccacaatctctgatgctaggaaacta 193  Q
    ||||||||||||||| ||| | || ||||| || ||||| |||||||||||| |||||||||| ||| ||||||| | |  |||| |||| ||||| | |    
T  43823927 cgtaaacacaacattaatggatctcggagacatgacattgctatgcatgaccatttgaactctatgtgaaaggtcaatagcctctaatgcaaggaagcca 43824026  T
Q  194 aaagtgtcaaa 204  Q
    |||||||||||    
T  43824027 aaagtgtcaaa 43824037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 81 - 134
Target Start/End: Original strand, 8882268 - 8882321
Alignment:
Q  81 gcaaaatcaatcatcgtaaacacaacattcatgaacctaggagaaattacattt 134  Q
    ||||||| |||| |||||||||||||||||||| |||||||||| || ||||||    
T  8882268 gcaaaattaatcctcgtaaacacaacattcatggacctaggagacatgacattt 8882321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 82 - 178
Target Start/End: Complemental strand, 9259474 - 9259377
Alignment:
Q  82 caaaatcaatcatcgtaaacacaacattcatgaacctaggagaaattacatttctatgcatgaccctttgaactct-tgtaaaaggtccacaatctct 178  Q
    ||||||||||| ||||||| |||||||||||| || ||||| | || ||||| ||||||||||  || |||||||| |||| |||||| |||| ||||    
T  9259474 caaaatcaatcttcgtaaatacaacattcatggacttaggatatatgacattgctatgcatgagtctgtgaactctatgtagaaggtcaacaacctct 9259377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 83 - 155
Target Start/End: Complemental strand, 8540561 - 8540489
Alignment:
Q  83 aaaatcaatcatcgtaaacacaacattcatgaacctaggagaaattacatttctatgcatgaccctttgaact 155  Q
    ||||||||||||||||||||||||||| |||||  ||| | | || |||||  || |||||||||||||||||    
T  8540561 aaaatcaatcatcgtaaacacaacatttatgaaaatagaaaacatgacattgttaagcatgaccctttgaact 8540489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 82 - 204
Target Start/End: Complemental strand, 121903 - 121780
Alignment:
Q  82 caaaatcaatcatcgtaaacacaacattcatgaacctaggagaaattacatttctatgcatgaccctttgaactct-tgtaaaaggtccacaatctctga 180  Q
    ||||||||||| ||||||||||||||| |||| || |||  || || |||||  ||||||||| | ||| |||| | |||| || ||| |||||||||||    
T  121903 caaaatcaatcctcgtaaacacaacatccatggacttagatgacatgacattgatatgcatgatcttttaaactttgtgtagaatgtcaacaatctctga 121804  T
Q  181 tgctaggaaactaaaagtgtcaaa 204  Q
     ||||||||  ||||||| |||||    
T  121803 ggctaggaagttaaaagtttcaaa 121780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 136 - 264
Target Start/End: Original strand, 500207 - 500335
Alignment:
Q  136 tatgcatgaccctttgaactct-tgtaaaaggtccacaatctctgatgctaggaaactaaaagtgtcaaagcgcaaattgtttaaaagcatgttgattgt 234  Q
    ||||||||||| |||||||||| |||| |||| | |||  |||| || |||||||||  ||| |||||||  | |||| || ||||||||||||||||||    
T  500207 tatgcatgaccttttgaactctatgtagaaggccaacac-ctctcatactaggaaaccgaaaatgtcaaaa-gtaaatggtataaaagcatgttgattgt 500304  T
Q  235 ctgaaca-tttttctcgtgtttggccacttt 264  Q
    | |||||  ||||||| ||||||||||||||    
T  500305 cagaacacgttttctcatgtttggccacttt 500335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 104 - 189
Target Start/End: Complemental strand, 39671332 - 39671246
Alignment:
Q  104 aacattcatgaacctaggagaaattacatttctatgcatgaccctttgaactct-tgtaaaaggtccacaatctctgatgctaggaa 189  Q
    |||||||||| | |||||||| || |||||| ||| ||||||||||| ||||||  |||||||||  |||| ||||| |||||||||    
T  39671332 aacattcatggatctaggagacatgacatttttattcatgacccttttaactctacgtaaaaggttaacaacctctggtgctaggaa 39671246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 66 - 155
Target Start/End: Original strand, 4699780 - 4699868
Alignment:
Q  66 aagcctttttgaatagcaaaatcaatcatcgtaaacacaacattcatgaacctaggagaaattacatttctatgcatgaccctttgaact 155  Q
    ||||||||||| || ||||||  |||| | |||||||||||||||||| ||||||| || || | ||| |||| ||||| ||||||||||    
T  4699780 aagcctttttggatggcaaaactaatccttgtaaacacaacattcatggacctaggtgacataatattgctattcatga-cctttgaact 4699868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 68 - 109
Target Start/End: Original strand, 8619733 - 8619774
Alignment:
Q  68 gcctttttgaatagcaaaatcaatcatcgtaaacacaacatt 109  Q
    |||||||||||  |||||||||||| ||||||||||||||||    
T  8619733 gcctttttgaaaggcaaaatcaatcgtcgtaaacacaacatt 8619774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 82; Significance: 2e-38; HSPs: 31)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 69 - 264
Target Start/End: Complemental strand, 21327033 - 21326837
Alignment:
Q  69 cctttttgaatagcaaaatcaatcatcgtaaacacaacattcatgaacctaggagaaattacatttctatgcatgaccctttgaactct-tgtaaaaggt 167  Q
    |||||||| || |||||||||||| |||| ||||||||||||||| |||||||||| || ||||| |||||||||||| |||||||||| ||||||||||    
T  21327033 cctttttggatggcaaaatcaatcctcgtgaacacaacattcatggacctaggagacataacattgctatgcatgaccttttgaactctatgtaaaaggt 21326934  T
Q  168 ccacaatctctgatgctaggaaactaaaagtgtcaaagcgcaaattgtttaaaagcatgttgattgtctgaaca-tttttctcgtgtttggccacttt 264  Q
    | |||  ||||| ||||||||||   |||||||||||  |||||| || ||||||||||||||||||| |||||   |||||| ||||||||||||||    
T  21326933 caacagcctctggtgctaggaaatcgaaagtgtcaaa-agcaaatggtataaaagcatgttgattgtcagaacacgctttctcatgtttggccacttt 21326837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 81 - 264
Target Start/End: Original strand, 27521395 - 27521579
Alignment:
Q  81 gcaaaatcaatcatcgtaaacacaacattcatgaacctaggagaaattacatttctatgcatgaccctttgaactct-tgtaaaaggtccacaatctctg 179  Q
    |||||||||||| |||||||||||||||||||  || ||||||| || |||||  ||||||||||| |||||||||| |||| |||||| |||| |||||    
T  27521395 gcaaaatcaatcctcgtaaacacaacattcatagacttaggagacatgacattgttatgcatgaccttttgaactctatgtagaaggtcaacaacctctg 27521494  T
Q  180 atgctaggaaactaaaagtgtcaaagcgcaaattgtttaaaagcatgttgattgtctgaaca-tttttctcgtgtttggccacttt 264  Q
    |||||||||||| ||||||||||||  | ||||||| |||| |||||||||||||| |||||  ||||||| |||||| |||||||    
T  27521495 atgctaggaaaccaaaagtgtcaaa-agtaaattgtataaatgcatgttgattgtcagaacacgttttctcatgtttgaccacttt 27521579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 99 - 241
Target Start/End: Original strand, 19277235 - 19277377
Alignment:
Q  99 aacacaacattcatgaacctaggagaaattacatttctatgcatgaccctttgaactct-tgtaaaaggtccacaatctctgatgctaggaaactaaaag 197  Q
    ||||||||||||||| |||||||||| || ||||| |||||||||||| |||||||||| |||| |||||| |||| ||||| |||||||||||  ||||    
T  19277235 aacacaacattcatggacctaggagacatgacattgctatgcatgaccttttgaactctatgtagaaggtcaacaacctctggtgctaggaaaccgaaag 19277334  T
Q  198 tgtcaaagcgcaaattgtttaaaagcatgttgattgtctgaaca 241  Q
    |||||||  |||||| || ||||||||||||||||||| |||||    
T  19277335 tgtcaaa-agcaaatggtataaaagcatgttgattgtcagaaca 19277377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 89 - 264
Target Start/End: Original strand, 4501191 - 4501366
Alignment:
Q  89 aatcatcgtaaacacaacattcatgaacctaggagaaattacatttctatgcatgaccctttgaactct-tgtaaaaggtccacaatctctgatgctagg 187  Q
    |||| |||||||||||||||||||||| |||||||| || ||||| |||||||||| | |||||||||| |||| |||||| |||| ||||| ||||||     
T  4501191 aatcctcgtaaacacaacattcatgaatctaggagacatgacattgctatgcatgaacttttgaactctatgtagaaggtcaacaacctctggtgctaga 4501290  T
Q  188 aaactaaaagtgtcaaagcgcaaattgtttaaaagcatgttgattgtctgaaca-tttttctcgtgtttggccacttt 264  Q
    ||||  |||||||||||  ||||||| | ||||||||||||||||||| |||||   |||||| ||||||||||||||    
T  4501291 aaac-caaagtgtcaaa-agcaaattatataaaagcatgttgattgtcagaacacgctttctcatgtttggccacttt 4501366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 71 - 235
Target Start/End: Original strand, 43856788 - 43856952
Alignment:
Q  71 tttttgaatagcaaaatcaatcatcgtaaacacaacattcatgaacctaggagaaattacatttctatgcatgaccctttgaactct-tgtaaaaggtcc 169  Q
    |||||| ||||||||||||||  ||||||||| |||||||||| |||||||||  || |||||  | |||||||||||||||||||| |||| ||||||     
T  43856788 tttttggatagcaaaatcaattctcgtaaacataacattcatggacctaggagtcatgacattgttgtgcatgaccctttgaactctatgtagaaggtca 43856887  T
Q  170 acaatctctgatgctaggaaactaaaagtgtcaaagcgcaaattgtttaaaagcatgttgattgtc 235  Q
    |||| ||||| || |||||||| |||| |||||||  ||||||||| |||| ||||||||||||||    
T  43856888 acaacctctggtgttaggaaaccaaaaatgtcaaa-agcaaattgtataaacgcatgttgattgtc 43856952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 82 - 268
Target Start/End: Original strand, 24527514 - 24527701
Alignment:
Q  82 caaaatcaatcatcgtaaacacaacattcatgaacctaggagaaattacatttctatgcatgaccctttgaactct-tgtaaaaggtccacaatctctga 180  Q
    ||||| ||||| |||| || |||||||||||| ||| ||||||||| ||||| |||||||||||| |||||||||| |||| |||||| ||   ||||      
T  24527514 caaaaccaatcctcgtgaatacaacattcatggaccaaggagaaatgacattgctatgcatgaccttttgaactctatgtagaaggtcaaccgcctctcg 24527613  T
Q  181 tgctaggaaactaaaagtgtcaaagcgcaaattgtttaaaagcatgttgattgtctgaaca-tttttctcgtgtttggccactttactt 268  Q
    |||||||||||| |||||||||||  |||||| || ||||||||||||||||||| |||||  ||||||| |||||  |||||||||||    
T  24527614 tgctaggaaactgaaagtgtcaaa-agcaaatggtataaaagcatgttgattgtcagaacacgttttctcatgttttcccactttactt 24527701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 71 - 264
Target Start/End: Complemental strand, 28517480 - 28517286
Alignment:
Q  71 tttttgaatagcaaaatcaatcatcgtaaacacaacattcatgaacctaggagaaattacatttctatgcatgaccctttgaactct-tgtaaaaggtcc 169  Q
    |||||| || |||||| ||||| |||||||||||||||||||| || ||||||| || |||||  ||||||| |||||||| ||||| |||| ||||||     
T  28517480 tttttggatggcaaaaccaatcctcgtaaacacaacattcatggacttaggagacataacattgttatgcataaccctttggactctatgtagaaggtca 28517381  T
Q  170 acaatctctgatgctaggaaactaaaagtgtcaaagcgcaaattgtttaaaagcatgttgattgtctgaaca-tttttctcgtgtttggccacttt 264  Q
    ||  ||||||||||||||||   ||||||||||||  |||||| || ||||| |||||||||||||| ||||   |||||| ||||||||||||||    
T  28517380 actgtctctgatgctaggaagtcaaaagtgtcaaa-agcaaatggtataaaaacatgttgattgtctaaacacgctttctcatgtttggccacttt 28517286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 61 - 234
Target Start/End: Original strand, 22197891 - 22198063
Alignment:
Q  61 ccgcgaagcctttttgaatagcaaaatcaatcatcgtaaacacaacattcatgaacctaggagaaattacatttctatgcatgaccctttgaactct-tg 159  Q
    |||| ||||||||||| ||  |||||||||| ||||||||||||||||||||  |||||||||| || || || |||| ||| ||| |||||||||| ||    
T  22197891 ccgccaagcctttttggatgacaaaatcaattatcgtaaacacaacattcattgacctaggagacatgacgttgctat-cataaccttttgaactctatg 22197989  T
Q  160 taaaaggtccacaatctctgatgctaggaaactaaaagtgtcaaagcgcaaattgtttaaaagcatgttgattgt 234  Q
    || |||||| |||| |||||||||||||||||  |||||| ||||  |||||| || ||||| ||||||||||||    
T  22197990 tagaaggtcaacaacctctgatgctaggaaaccgaaagtgacaaa-agcaaatggtataaaaacatgttgattgt 22198063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 61 - 234
Target Start/End: Complemental strand, 22239930 - 22239758
Alignment:
Q  61 ccgcgaagcctttttgaatagcaaaatcaatcatcgtaaacacaacattcatgaacctaggagaaattacatttctatgcatgaccctttgaactct-tg 159  Q
    |||| ||||||||||| ||  |||||||||| ||||||||||||||||||||  |||||||||| || || || |||| ||| ||| |||||||||| ||    
T  22239930 ccgccaagcctttttggatgacaaaatcaattatcgtaaacacaacattcattgacctaggagacatgacgttgctat-cataaccttttgaactctatg 22239832  T
Q  160 taaaaggtccacaatctctgatgctaggaaactaaaagtgtcaaagcgcaaattgtttaaaagcatgttgattgt 234  Q
    || |||||| |||| |||||||||||||||||  |||||| ||||  |||||| || ||||| ||||||||||||    
T  22239831 tagaaggtcaacaacctctgatgctaggaaaccgaaagtgacaaa-agcaaatggtataaaaacatgttgattgt 22239758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 70 - 235
Target Start/End: Complemental strand, 30216252 - 30216087
Alignment:
Q  70 ctttttgaatagcaaaatcaatcatcgtaaacacaacattcatgaacctaggagaaattacatttctatgcatgaccctttgaactct-tgtaaaaggtc 168  Q
    ||||||||||  ||||||| ||| |||| ||||||||||||||  |||||||||| || ||||| |||||||||||| |||||||| | |||  ||| ||    
T  30216252 ctttttgaatgacaaaatcgatcctcgtgaacacaacattcatagacctaggagatatgacattgctatgcatgaccatttgaactttatgtggaagatc 30216153  T
Q  169 cacaatctctgatgctaggaaactaaaagtgtcaaagcgcaaattgtttaaaagcatgttgattgtc 235  Q
     |||| |||||||||||||||||  |||||||||||  |||||| || ||||| |||||||||||||    
T  30216152 aacaaactctgatgctaggaaaccgaaagtgtcaaa-agcaaatggtataaaaacatgttgattgtc 30216087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 70 - 235
Target Start/End: Original strand, 48539094 - 48539259
Alignment:
Q  70 ctttttgaatagcaaaatcaatcatcgtaaacacaacattcatgaacctaggagaaattacatttctatgcatgaccctttgaactct-tgtaaaaggtc 168  Q
    ||||||| || |||||| ||||| |||||||||||||||||||| |||||||||| || ||||| |||||||||||| |||| ||||| |||| | | ||    
T  48539094 ctttttggatggcaaaaccaatcctcgtaaacacaacattcatggacctaggagacatgacattgctatgcatgaccttttggactctatgtagacgatc 48539193  T
Q  169 cacaatctctgatgctaggaaactaaaagtgtcaaagcgcaaattgtttaaaagcatgttgattgtc 235  Q
     |||  ||||| |||||| ||||  |||||||||||  |||||| || |||||||||||||||||||    
T  48539194 aacagcctctggtgctagaaaaccgaaagtgtcaaa-agcaaatggtataaaagcatgttgattgtc 48539259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 69 - 264
Target Start/End: Original strand, 982861 - 983057
Alignment:
Q  69 cctttttgaatagcaaaatcaatcatcgtaaacacaacattcatgaacctaggagaaattacatttctatgcatgaccctttgaactct-tgtaaaaggt 167  Q
    |||||||| || |||| | ||||| |||| ||||||||||||||| || ||| ||| || |||||  ||||||||||| |||||||||| |||| ||||     
T  982861 cctttttggatggcaataccaatcctcgtgaacacaacattcatggacatagaagacatgacattgatatgcatgaccttttgaactctatgtagaaggc 982960  T
Q  168 ccacaatctctgatgctaggaaactaaaagtgtcaaagcgcaaattgtttaaaagcatgttgattgtctgaaca-tttttctcgtgtttggccacttt 264  Q
    | |||| ||||| |||||| ||||  ||||| |||||  |||||| || ||||||||||||||||||| |||||   |||||| ||||||||||||||    
T  982961 caacaacctctggtgctagaaaaccgaaagtatcaaa-agcaaatggtataaaagcatgttgattgtcagaacacgatttctcatgtttggccacttt 983057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 86 - 264
Target Start/End: Original strand, 10905047 - 10905225
Alignment:
Q  86 atcaatcatcgtaaacacaacattcatgaacctaggagaaattacatttctatgcatgaccctttgaactct-tgtaaaaggtccacaatctctgatgct 184  Q
    ||||||| | |||||||| ||||||||| |||||||||| || |||||  |||||||| | ||||||||||| |||| |||||| |||  ||||| ||||    
T  10905047 atcaatccttgtaaacacgacattcatggacctaggagacatgacattgttatgcatggctctttgaactctatgtagaaggtcaacatactctggtgct 10905146  T
Q  185 aggaaactaaaagtgtcaaagcgcaaattgtttaaaagcatgttgattgtctgaaca-tttttctcgtgtttggccacttt 264  Q
    ||| ||| ||||||||||||  |||||| || | |||||||||||| |||| ||||| |||||||| | ||||||||||||    
T  10905147 aggcaaccaaaagtgtcaaa-agcaaatggtat-aaagcatgttgagtgtcagaacactttttctcatatttggccacttt 10905225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 71 - 241
Target Start/End: Complemental strand, 40726673 - 40726503
Alignment:
Q  71 tttttgaatagcaaaatcaatcatcgtaaacacaacattcatgaacctaggagaaattacatttctatgcatgaccctttgaactct-tgtaaaaggtcc 169  Q
    |||||| || |||||||||||| || ||||||||||||||||| | |||||||| ||  ||||  ||||||| |||||||| ||||| |||| ||||||     
T  40726673 tttttggatggcaaaatcaatcctcataaacacaacattcatggatctaggagacatagcattgttatgcataaccctttggactctatgtagaaggtca 40726574  T
Q  170 acaatctctgatgctaggaaactaaaagtgtcaaagcgcaaattgtttaaaagcatgttgattgtctgaaca 241  Q
    |||| ||||||||||| ||| |  |||||||||||   ||||| || ||||| ||||||||||||| |||||    
T  40726573 acaacctctgatgctatgaagccgaaagtgtcaaa-aacaaatggtataaaaacatgttgattgtcagaaca 40726503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 68 - 264
Target Start/End: Original strand, 32584511 - 32584709
Alignment:
Q  68 gcctttttgaatagcaaaatcaatcatcgtaaacacaacattcatgaacctaggagaaattacatttctatgcatgacccttt-gaactct-tgtaaaag 165  Q
    ||||||||| || | |||||||||| | |||||||||||||||||  | ||| |||| || |||||  ||||||||| | ||| ||||||| | || |||    
T  32584511 gcctttttggatggtaaaatcaatctttgtaaacacaacattcatcgatctatgagacataacattgatatgcatgatcttttggaactctatctagaag 32584610  T
Q  166 gtccacaatctctgatgctaggaaactaaaagtgtcaaagcgcaaattgtttaaaagcatgttgattgtctgaaca-tttttctcgtgtttggccacttt 264  Q
    ||| |||| ||||| |||||||||||  |||||||||||  |||||| || ||||||||| ||||||||| |||||  ||||||| |||||| |||||||    
T  32584611 gtcaacaacctctggtgctaggaaacataaagtgtcaaa-agcaaatggtgtaaaagcatcttgattgtcagaacacgttttctcatgtttgaccacttt 32584709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 71 - 157
Target Start/End: Complemental strand, 41117963 - 41117877
Alignment:
Q  71 tttttgaatagcaaaatcaatcatcgtaaacacaacattcatgaacctaggagaaattacatttctatgcatgaccctttgaactct 157  Q
    |||||| |||||||||||||||||||| ||||||||||||||| |||||||| | || ||||| |||||||||| | ||| ||||||    
T  41117963 tttttggatagcaaaatcaatcatcgtgaacacaacattcatggacctaggaaacatgacattgctatgcatgatcttttaaactct 41117877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 81 - 235
Target Start/End: Original strand, 5825197 - 5825351
Alignment:
Q  81 gcaaaatcaatcatcgtaaacacaacattcatgaacctaggagaaattacatttctatgcatgaccctttgaactct-tgtaaaaggtccacaatctctg 179  Q
    |||||| ||||| ||||||||||||||| |||  |||||||||| || ||||| |||||||| |||||||  ||||| |||| |||||| |||| |||||    
T  5825197 gcaaaaccaatcctcgtaaacacaacatccatagacctaggagacataacattgctatgcataaccctttcgactctatgtagaaggtcaacaacctctg 5825296  T
Q  180 atgctaggaaactaaaagtgtcaaagcgcaaattgtttaaaagcatgttgattgtc 235  Q
     ||||||||  |  |||||||||||  | |||| || ||||| |||||||||||||    
T  5825297 gtgctaggatgccgaaagtgtcaaa-agtaaatggtataaaaacatgttgattgtc 5825351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 70 - 204
Target Start/End: Complemental strand, 5972410 - 5972275
Alignment:
Q  70 ctttttgaatagcaaaatcaatcatcgtaaacacaacattcatgaacctaggagaaattacatttctatgcatgaccctttgaactct-tgtaaaaggtc 168  Q
    ||||||| || ||||||  |||| |||||||||||||||||||  | || |||||||| ||||| |||||||||||  |||||||||| |||| ||||||    
T  5972410 ctttttggatggcaaaactaatcctcgtaaacacaacattcatagatctgggagaaatgacattactatgcatgacattttgaactctatgtagaaggtc 5972311  T
Q  169 cacaatctctgatgctaggaaactaaaagtgtcaaa 204  Q
     |||| ||||||| |||| ||| | ||| |||||||    
T  5972310 aacaacctctgatactagaaaaatgaaaatgtcaaa 5972275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 81 - 154
Target Start/End: Original strand, 23037469 - 23037542
Alignment:
Q  81 gcaaaatcaatcatcgtaaacacaacattcatgaacctaggagaaattacatttctatgcatgaccctttgaac 154  Q
    |||||||||||| |||||||||||| ||||||  ||||| ||||||| ||||| |||||||| |||||||||||    
T  23037469 gcaaaatcaatcctcgtaaacacaaaattcatagacctaagagaaatgacattgctatgcataaccctttgaac 23037542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 81 - 241
Target Start/End: Complemental strand, 45614025 - 45613865
Alignment:
Q  81 gcaaaatcaatcatcgtaaacacaacattcatgaacctaggagaaattacatttctatgcatgaccctttgaactct-tgtaaaaggtccacaatctctg 179  Q
    |||||| ||||| |||||||||||||||||||| ||||||||||  | |||||  ||||||||| | |||||||||| |||| ||||   |||  |||||    
T  45614025 gcaaaaccaatcctcgtaaacacaacattcatggacctaggagatttgacattgttatgcatgaacttttgaactctatgtagaaggctaacagcctctg 45613926  T
Q  180 atgctaggaaactaaaagtgtcaaagcgcaaattgtttaaaagcatgttgattgtctgaaca 241  Q
     |||| ||||||  |||||||||||   ||||| || ||||| ||||||||||||| |||||    
T  45613925 gtgcttggaaaccgaaagtgtcaaa-atcaaatggtataaaaacatgttgattgtcagaaca 45613865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 83 - 157
Target Start/End: Complemental strand, 25187112 - 25187038
Alignment:
Q  83 aaaatcaatcatcgtaaacacaacattcatgaacctaggagaaattacatttctatgcatgaccctttgaactct 157  Q
    |||||||||||| |  ||||||||||||||| | |||||||| || ||||| |||||||||||| ||||||||||    
T  25187112 aaaatcaatcattgggaacacaacattcatggatctaggagacatgacattgctatgcatgaccttttgaactct 25187038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 69 - 151
Target Start/End: Complemental strand, 45003092 - 45003010
Alignment:
Q  69 cctttttgaatagcaaaatcaatcatcgtaaacacaacattcatgaacctaggagaaattacatttctatgcatgaccctttg 151  Q
    |||||||| || |||||||||||| ||||||||||||||||||||  |||| |||| || ||||| |||||||| || |||||    
T  45003092 cctttttggatggcaaaatcaatcttcgtaaacacaacattcatggtcctatgagacataacattgctatgcataactctttg 45003010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 78 - 146
Target Start/End: Complemental strand, 36559053 - 36558985
Alignment:
Q  78 atagcaaaatcaatcatcgtaaacacaacattcatgaacctaggagaaattacatttctatgcatgacc 146  Q
    |||||||||||| ||||||||||||||||||||||| |||||  ||| || | |||| |||||||||||    
T  36559053 atagcaaaatcattcatcgtaaacacaacattcatggacctataagacatgatatttatatgcatgacc 36558985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 140 - 234
Target Start/End: Complemental strand, 9281255 - 9281161
Alignment:
Q  140 catgaccctttgaactct-tgtaaaaggtccacaatctctgatgctaggaaactaaaagtgtcaaagcgcaaattgtttaaaagcatgttgattgt 234  Q
    |||||||||||||||||| |||| |||||| ||||  |||| ||||||||| | |||| ||||||| | ||||| || ||||||||||||||||||    
T  9281255 catgaccctttgaactctatgtagaaggtcaacaacatctggtgctaggaagcaaaaaatgtcaaatc-caaatagtataaaagcatgttgattgt 9281161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 140 - 234
Target Start/End: Complemental strand, 9292226 - 9292132
Alignment:
Q  140 catgaccctttgaactct-tgtaaaaggtccacaatctctgatgctaggaaactaaaagtgtcaaagcgcaaattgtttaaaagcatgttgattgt 234  Q
    |||||||||||||||||| |||| |||||| ||||  |||| ||||||||| | |||| ||||||| | ||||| || ||||||||||||||||||    
T  9292226 catgaccctttgaactctatgtagaaggtcaacaacatctggtgctaggaagcaaaaaatgtcaaatc-caaatagtataaaagcatgttgattgt 9292132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 70 - 133
Target Start/End: Complemental strand, 27027824 - 27027761
Alignment:
Q  70 ctttttgaatagcaaaatcaatcatcgtaaacacaacattcatgaacctaggagaaattacatt 133  Q
    ||||||| ||||||||| ||||| |||| ||||||||||||||| |||||||||| || |||||    
T  27027824 ctttttggatagcaaaaccaatcctcgtgaacacaacattcatggacctaggagacatgacatt 27027761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 69 - 123
Target Start/End: Original strand, 2904292 - 2904346
Alignment:
Q  69 cctttttgaatagcaaaatcaatcatcgtaaacacaacattcatgaacctaggag 123  Q
    |||||||| ||||||||| |||| ||||||||||||||||||||  |||||||||    
T  2904292 cctttttggatagcaaaaccaattatcgtaaacacaacattcatagacctaggag 2904346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 60 - 153
Target Start/End: Complemental strand, 43334034 - 43333941
Alignment:
Q  60 gccgcgaagcctttttgaatagcaaaatcaatcatcgtaaacacaacattcatgaacctaggagaaattacatttctatgcatgaccctttgaa 153  Q
    ||||| ||| |||||||||| |||||| |||||||| ||||| ||||||||||  | |||||||| ||  ||||  ||||||||||| ||||||    
T  43334034 gccgccaagtctttttgaatggcaaaaccaatcatcataaactcaacattcatagatctaggagacatgtcattgatatgcatgaccttttgaa 43333941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 71 - 145
Target Start/End: Original strand, 34772696 - 34772770
Alignment:
Q  71 tttttgaatagcaaaatcaatcatcgtaaacacaacattcatgaacctaggagaaattacatttctatgcatgac 145  Q
    ||||||||| |||||| |||| ||||||||||||| ||||||| |||||| | | || |||||  ||||||||||    
T  34772696 tttttgaatggcaaaaccaattatcgtaaacacaatattcatggacctagaaaacatgacattgatatgcatgac 34772770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 70 - 124
Target Start/End: Complemental strand, 42295378 - 42295324
Alignment:
Q  70 ctttttgaatagcaaaatcaatcatcgtaaacacaacattcatgaacctaggaga 124  Q
    ||||||| ||| |||||  ||||||||||||||||| ||||||| ||||||||||    
T  42295378 ctttttggataacaaaactaatcatcgtaaacacaagattcatggacctaggaga 42295324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 96 - 124
Target Start/End: Complemental strand, 45974767 - 45974739
Alignment:
Q  96 gtaaacacaacattcatgaacctaggaga 124  Q
    |||||||||||||||||||||||||||||    
T  45974767 gtaaacacaacattcatgaacctaggaga 45974739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 82; Significance: 2e-38; HSPs: 29)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 81 - 268
Target Start/End: Original strand, 53785633 - 53785821
Alignment:
Q  81 gcaaaatcaatcatcgtaaacacaacattcatgaacctaggagaaattacatttctatgcatgaccctttgaactct-tgtaaaaggtccacaatctctg 179  Q
    |||||| ||||| ||||||||| |||||||||| |||||||||| || ||||| |||||||||||| |||||||||| |||| |||||| |||| |||||    
T  53785633 gcaaaaccaatcctcgtaaacataacattcatggacctaggagacatgacattgctatgcatgaccttttgaactctatgtagaaggtcaacaacctctg 53785732  T
Q  180 atgctaggaaactaaaagtgtcaaagcgcaaattgtttaaaagcatgttgattgtctgaaca-tttttctcgtgtttggccactttactt 268  Q
     |||||||||||  |||||||||||  |||||| || ||||||||||||||||||| |||||   |||||||||||||||||| ||||||    
T  53785733 gtgctaggaaaccgaaagtgtcaaa-agcaaatggtataaaagcatgttgattgtcagaacacgctttctcgtgtttggccaccttactt 53785821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 69 - 264
Target Start/End: Complemental strand, 39583424 - 39583228
Alignment:
Q  69 cctttttgaatagcaaaatcaatcatcgtaaacacaacattcatgaacctaggagaaattacatttctatgcatgaccctttgaactct-tgtaaaaggt 167  Q
    |||||||| || |||||||||||| |||||||||| |||||||||||||||||||| || ||||| ||||||||||||||||||||||| || | |||||    
T  39583424 cctttttggatggcaaaatcaatcctcgtaaacacgacattcatgaacctaggagacatgacattgctatgcatgaccctttgaactctatgcagaaggt 39583325  T
Q  168 ccacaatctctgatgctaggaaactaaaagtgtcaaagcgcaaattgtttaaaagcatgttgattgtctgaaca-tttttctcgtgtttggccacttt 264  Q
    | |||| || ||||||||||||||  |||||||| ||   |||||  | ||||||||||||||||||| |||||   |||||| ||||||||||||||    
T  39583324 caacaacctatgatgctaggaaaccgaaagtgtcgaa-aacaaatgatataaaagcatgttgattgtcagaacacgctttctcatgtttggccacttt 39583228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 69 - 264
Target Start/End: Original strand, 26772670 - 26772866
Alignment:
Q  69 cctttttgaatagcaaaatcaatcatcgtaaacacaacattcatgaacctaggagaaattacatttctatgcatgaccctttgaactct-tgtaaaaggt 167  Q
    |||||||| || |||||||||||| |||||||||||||||||||| |||||||||| || |||||  ||||||| | |||||| ||||| | || |||||    
T  26772670 cctttttggatggcaaaatcaatcctcgtaaacacaacattcatggacctaggagacataacattgttatgcataatcctttgtactctatatagaaggt 26772769  T
Q  168 ccacaatctctgatgctaggaaactaaaagtgtcaaagcgcaaattgtttaaaagcatgttgattgtctgaaca-tttttctcgtgtttggccacttt 264  Q
    | ||   ||||||||||||||| | ||||||||||||  |||||| || ||||||||||||||||||| |||||  ||||||  ||||||||||||||    
T  26772770 caactgcctctgatgctaggaagccaaaagtgtcaaa-agcaaatggtataaaagcatgttgattgtcagaacacgttttctgatgtttggccacttt 26772866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 69 - 262
Target Start/End: Original strand, 32546707 - 32546901
Alignment:
Q  69 cctttttgaatagcaaaatcaatcatcgtaaacacaacattcatgaacctaggagaaattacatttctatgcatgaccctttgaactct-tgtaaaaggt 167  Q
    |||||||| || |||||| ||||| |||| ||||||||||||||| |||||||||| || ||||| |||||||||||  |||||||||| |||| |||||    
T  32546707 cctttttggatggcaaaaccaatcctcgtgaacacaacattcatggacctaggagacatgacattactatgcatgactttttgaactctatgtagaaggt 32546806  T
Q  168 ccacaatctctgatgctaggaaactaaaagtgtcaaagcgcaaattgtttaaaagcatgttgattgtctgaaca-tttttctcgtgtttggccact 262  Q
    | |||  || || |||||||||||| |||||||||||  |||||| || |||||| |||||||||||| |||||   |||||| ||||||||||||    
T  32546807 caacagcctttggtgctaggaaactgaaagtgtcaaa-agcaaatggtataaaagtatgttgattgtccgaacacgctttctcatgtttggccact 32546901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 69 - 264
Target Start/End: Original strand, 44198679 - 44198875
Alignment:
Q  69 cctttttgaatagcaaaatcaatcatcgtaaacacaacattcatgaacctaggagaaattacatttctatgcatgaccctttgaactct-tgtaaaaggt 167  Q
    |||||||| || ||||||||||| |||| |||||||||||||||| |||||||||| || ||||| |||||||| ||| | |||||||| |||| |||||    
T  44198679 cctttttggatggcaaaatcaattatcgcaaacacaacattcatggacctaggagacatgacattgctatgcataaccttctgaactctatgtagaaggt 44198778  T
Q  168 ccacaatctctgatgctaggaaactaaaagtgtcaaagcgcaaattgtttaaaagcatgttgattgtctgaaca-tttttctcgtgtttggccacttt 264  Q
    | |||  ||| | || || |||||  |||||||||||  |||||| || |||||||||||||||| || |||||   |||||| ||||||||||||||    
T  44198779 caacagcctcgggtgttaagaaaccgaaagtgtcaaa-agcaaatggtataaaagcatgttgattctcagaacacgctttctcatgtttggccacttt 44198875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 117 - 241
Target Start/End: Complemental strand, 52741659 - 52741535
Alignment:
Q  117 ctaggagaaattacatttctatgcatgaccctttgaactct-tgtaaaaggtccacaatctctgatgctaggaaactaaaagtgtcaaagcgcaaattgt 215  Q
    |||||||| || ||||| |||||||||||| |||||||||| |||| |||||| |||| ||||| ||||||||||| ||||||||||||  |||||| ||    
T  52741659 ctaggagacatgacattgctatgcatgaccttttgaactctatgtagaaggtcaacaacctctggtgctaggaaaccaaaagtgtcaaa-agcaaatggt 52741561  T
Q  216 ttaaaagcatgttgattgtctgaaca 241  Q
     ||||||||||||||||||| |||||    
T  52741560 ataaaagcatgttgattgtcagaaca 52741535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 68 - 235
Target Start/End: Complemental strand, 26856958 - 26856791
Alignment:
Q  68 gcctttttgaatagcaaaatcaatcatcgtaaacacaacattcatgaacctaggagaaattacatttctatgcatgaccctttgaactct-tgtaaaagg 166  Q
    ||||||||| || | |||| ||||| ||| || |||||||||||| ||||||||||| || ||||| ||||||||||||||||||||||| |||| ||||    
T  26856958 gcctttttggatggtaaaaccaatcctcgcaagcacaacattcataaacctaggagacatgacattgctatgcatgaccctttgaactctatgtagaagg 26856859  T
Q  167 tccacaatctctgatgctaggaaactaaaagtgtcaaagcgcaaattgtttaaaagcatgttgattgtc 235  Q
    || ||| |||||  ||||||||||   |||| ||||||  ||| || || |||||||||||||||||||    
T  26856858 tcaacagtctctagtgctaggaaatcgaaagcgtcaaa-agcagatggtataaaagcatgttgattgtc 26856791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 81 - 234
Target Start/End: Complemental strand, 3443495 - 3443342
Alignment:
Q  81 gcaaaatcaatcatcgtaaacacaacattcatgaacctaggagaaattacatttctatgcatgaccctttgaactct-tgtaaaaggtccacaatctctg 179  Q
    |||||| |||||||||||||||||||||||||  |  ||||||| |  ||||| ||| ||||||||||||||||||| |||| |||||| |||| ||||     
T  3443495 gcaaaaccaatcatcgtaaacacaacattcatagatttaggagacaagacattcctacgcatgaccctttgaactctatgtagaaggtcaacaacctcta 3443396  T
Q  180 atgctaggaaactaaaagtgtcaaagcgcaaattgtttaaaagcatgttgattgt 234  Q
     |||||||||||| |||||||| ||  | |||| || ||||||||||||||||||    
T  3443395 gtgctaggaaactgaaagtgtc-aacagaaaatggtataaaagcatgttgattgt 3443342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 82 - 235
Target Start/End: Original strand, 38145981 - 38146134
Alignment:
Q  82 caaaatcaatcatcgtaaacacaacattcatgaacctaggagaaattacatttctatgcatgaccctttgaactct-tgtaaaaggtccacaatctctga 180  Q
    ||||||||||||||||||||||||| |||||| |||||||||| || |||||  ||||||||||||||||||||||  ||| || ||  |||| |||||     
T  38145981 caaaatcaatcatcgtaaacacaacgttcatggacctaggagacatgacattgttatgcatgaccctttgaactctaagtagaatgtaaacaacctctgg 38146080  T
Q  181 tgctaggaaactaaaagtgtcaaagcgcaaattgtttaaaagcatgttgattgtc 235  Q
    |||||||||   ||||||||||||  | |||| || ||||| |||||||||||||    
T  38146081 tgctaggaagtcaaaagtgtcaaa-tgtaaatggtataaaaacatgttgattgtc 38146134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 68 - 241
Target Start/End: Original strand, 13582421 - 13582593
Alignment:
Q  68 gcctttttgaatagcaaaatcaatcatcgtaaacacaacattcatgaacctaggagaaattacatttctatgcatgaccctttgaactct-tgtaaaagg 166  Q
    ||||||||| || || ||||||||| ||||||||||||||||||||  ||||||||| || |||||  ||||||||||| |||||||||| |||| ||||    
T  13582421 gcctttttggatggctaaatcaatcttcgtaaacacaacattcatggtcctaggagacatgacattgttatgcatgaccttttgaactctctgtagaagg 13582520  T
Q  167 tccacaatctctgatgctaggaaactaaaagtgtcaaagcgcaaattgtttaaaagcatgttgattgtctgaaca 241  Q
    || |||||   || ||||||||||  |||||||| |||   ||||| || ||||| || |||||||||| |||||    
T  13582521 tcaacaattgttggtgctaggaaatcaaaagtgtaaaa--acaaatggtataaaaacacgttgattgtcagaaca 13582593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 69 - 241
Target Start/End: Complemental strand, 37133194 - 37133022
Alignment:
Q  69 cctttttgaatagcaaaatcaatcatcgtaaacacaacattcatgaacctaggagaaattacatttctatgcatgaccctttgaactct-tgtaaaaggt 167  Q
    |||||||| || |||||| ||||| |  |||||||||||||||| ||| ||||||| || ||||| |||||||||||| || ||||||| |||| |||||    
T  37133194 cctttttggatcgcaaaaccaatccttataaacacaacattcattaacttaggagacatgacattgctatgcatgacctttagaactctatgtagaaggt 37133095  T
Q  168 ccacaatctctgatgctaggaaactaaaagtgtcaaagcgcaaattgtttaaaagcatgttgattgtctgaaca 241  Q
    | |||| ||||| ||||| |||||  ||||||| |||   ||||| || ||||| ||||||||||||| |||||    
T  37133094 caacaacctctggtgctaagaaaccgaaagtgt-aaaaaacaaatggtataaaaacatgttgattgtcagaaca 37133022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 81 - 241
Target Start/End: Complemental strand, 38671063 - 38670903
Alignment:
Q  81 gcaaaatcaatcatcgtaaacacaacattcatgaacctaggagaaattacatttctatgcatgaccctttgaactct-tgtaaaaggtccacaatctctg 179  Q
    |||||| ||||| ||||| |||||||||||||| |||||||||| || ||||| |||||||| || ||||  ||||| |||| ||||||  |   |||||    
T  38671063 gcaaaaccaatcctcgtacacacaacattcatggacctaggagacataacattgctatgcataactctttagactctatgtagaaggtcatccgcctctg 38670964  T
Q  180 atgctaggaaactaaaagtgtcaaagcgcaaattgtttaaaagcatgttgattgtctgaaca 241  Q
    ||||||| || | ||||||||||||   |||||||| ||||||||||||||||||| |||||    
T  38670963 atgctagaaagccaaaagtgtcaaa-aacaaattgtataaaagcatgttgattgtcagaaca 38670903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 66 - 241
Target Start/End: Complemental strand, 52412089 - 52411914
Alignment:
Q  66 aagcctttttgaatagcaaaatcaatcatcgtaaacacaacattcatgaacctaggagaaattacatttctatgcatgaccctttgaactct-tgtaaaa 164  Q
    ||||||||||| || |||||||||||||| |||||||||| ||| |||   |||||||| || |||||  |||||||||||||||||||||| |||| ||    
T  52412089 aagcctttttggatggcaaaatcaatcattgtaaacacaatatttatgggtctaggagacatgacattgttatgcatgaccctttgaactctatgtagaa 52411990  T
Q  165 ggtccacaatctctgatgctaggaaactaaaagtgtcaaagcgcaaattgtttaaaagcatgttgattgtctgaaca 241  Q
    |||| || |  |||  || ||| || || |||||||||||  |||||| |  ||||||||||||||||||| |||||    
T  52411989 ggtcaacgacatctagtgttagaaagctgaaagtgtcaaa-agcaaatggaataaaagcatgttgattgtcagaaca 52411914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 70 - 204
Target Start/End: Complemental strand, 7502204 - 7502071
Alignment:
Q  70 ctttttgaatagcaaaatcaatcatcgtaaacacaacattcatgaacctaggagaaattacatttctatgcatgaccctttgaactcttgtaaaaggtcc 169  Q
    ||||||| |||||||||||||| |||||||||| || ||||||| | ||| |||  || |||||  | ||||||||||||| ||||| |||| ||||||     
T  7502204 ctttttggatagcaaaatcaattatcgtaaacataatattcatggatctatgagtcatgacattgttgtgcatgaccctttaaactc-tgtagaaggtca 7502106  T
Q  170 acaatctctgatgctaggaaactaaaagtgtcaaa 204  Q
    |||| ||||| ||||||||||| |||| |||||||    
T  7502105 acaacctctggtgctaggaaaccaaaaatgtcaaa 7502071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 96 - 204
Target Start/End: Original strand, 21552603 - 21552716
Alignment:
Q  96 gtaaacacaacattcatgaacctaggagaaattacatttc----tatgcatgaccctttgaactct-tgtaaaaggtccacaatctctgatgctaggaaa 190  Q
    |||||||||||||||||| |||||||||| || | ||| |    ||||||||||| |||||||||| |||| |||||| ||| |||||||||||||||||    
T  21552603 gtaaacacaacattcatggacctaggagatatgatattacgtactatgcatgaccttttgaactctatgtagaaggtcaacagtctctgatgctaggaaa 21552702  T
Q  191 ctaaaagtgtcaaa 204  Q
    || ||| |||||||    
T  21552703 ctgaaaatgtcaaa 21552716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 72 - 235
Target Start/End: Original strand, 5338561 - 5338721
Alignment:
Q  72 ttttgaatagcaaaatcaatcatcgtaaacacaacattcatgaacctaggagaaattacatttctatgcatgaccctttgaactct-tgtaaaaggtcca 170  Q
    ||||| || |||||| ||||| |||||||||||||||||    ||||| |||| |  ||||| ||| |||||||| |||||||||| |||| || ||| |    
T  5338561 ttttggatggcaaaaccaatcctcgtaaacacaacattcg---acctatgagacaagacattgctacgcatgaccttttgaactctatgtagaatgtcaa 5338657  T
Q  171 caatctctgatgctaggaaactaaaagtgtcaaagcgcaaattgtttaaaagcatgttgattgtc 235  Q
    ||||||||  ||||||||| |  |||||||||||  ||||||||| |||||||||||||| ||||    
T  5338658 caatctctagtgctaggaagccgaaagtgtcaaaa-gcaaattgtataaaagcatgttgactgtc 5338721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 83 - 157
Target Start/End: Original strand, 42205993 - 42206067
Alignment:
Q  83 aaaatcaatcatcgtaaacacaacattcatgaacctaggagaaattacatttctatgcatgaccctttgaactct 157  Q
    |||||||||||||||||||||||| || ||| | |||||| | ||||||||||||||||||||| ||| ||||||    
T  42205993 aaaatcaatcatcgtaaacacaacgtttatggatctaggatacattacatttctatgcatgaccatttaaactct 42206067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 60 - 133
Target Start/End: Complemental strand, 4669867 - 4669794
Alignment:
Q  60 gccgcgaagcctttttgaatagcaaaatcaatcatcgtaaacacaacattcatgaacctaggagaaattacatt 133  Q
    ||||| || |||||||| ||| |||||||||||||||||||||||||||||||| ||| |||||| || |||||    
T  4669867 gccgccaaacctttttggataacaaaatcaatcatcgtaaacacaacattcatggaccaaggagacatgacatt 4669794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 70 - 264
Target Start/End: Complemental strand, 46940967 - 46940769
Alignment:
Q  70 ctttttgaatagcaaaatcaatcatcgtaaacacaacattcatgaacctaggagaaattacatttctatgcatgaccctttgaactct-tgtaaaa---g 165  Q
    ||||||| ||| ||||||||||  |||||||||||||||||||||||||| |||  || |||||    ||||||| |||||||||||| |||| ||   |    
T  46940967 ctttttggataacaaaatcaattttcgtaaacacaacattcatgaacctatgagtcatgacattgtcgtgcatgatcctttgaactctatgtagaagctg 46940868  T
Q  166 gtccacaatctctgatgctaggaaactaaaagtgtcaaagcgcaaattgtttaaaagcatgttgattgtctgaacat-ttttctcgtgtttggccacttt 264  Q
    ||| | | ||| || ||||||||    ||||||||||||   ||||| || ||||||||||||||||||| |||||| ||||||  ||||||||||||||    
T  46940867 gtcaatagtctatggtgctaggacgtcaaaagtgtcaaa-aacaaatggtataaaagcatgttgattgtcggaacatgttttctaatgtttggccacttt 46940769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 89 - 172
Target Start/End: Complemental strand, 4763967 - 4763884
Alignment:
Q  89 aatcatcgtaaacacaacattcatgaacctaggagaaattacatttctatgcatgaccctttgaactct-tgtaaaaggtccaca 172  Q
    |||| |||||||||||||||||||| ||| |||||| || ||||| |||||||| ||| |||||||||| |||| ||||||||||    
T  4763967 aatcctcgtaaacacaacattcatggacc-aggagacatgacattgctatgcataaccttttgaactctatgtagaaggtccaca 4763884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 71 - 190
Target Start/End: Original strand, 25324943 - 25325063
Alignment:
Q  71 tttttgaatagcaaaatcaatcatcgtaaacacaacattcatgaacctaggagaaattacatttctatgcatgaccctttgaactct-tgtaaaaggtcc 169  Q
    |||||| || |||||| |||||||||||| ||||| ||||||| |  ||||| |  | ||||| |||||||||| | |||||||||| |||| ||||||     
T  25324943 tttttggatggcaaaagcaatcatcgtaagcacaatattcatggatttaggaaacttgacattgctatgcatgatcatttgaactctatgtagaaggtca 25325042  T
Q  170 acaatctctgatgctaggaaa 190  Q
    ||||||| || ||||||||||    
T  25325043 acaatctatggtgctaggaaa 25325063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 89 - 235
Target Start/End: Original strand, 7900790 - 7900936
Alignment:
Q  89 aatcatcgtaaacacaacattcatgaacctaggagaaattacatttctatgcatgaccctttgaactct-tgtaaaaggtccacaatctctgatgctagg 187  Q
    |||||| ||||||| || ||| ||| |||||||| | || ||||| ||||| || | ||||  |||||| |||| |||||| |||| |||||||||||||    
T  7900790 aatcattgtaaacaaaatattgatggacctaggaaacataacattgctatgtataatccttcaaactctatgtagaaggtcaacaacctctgatgctagg 7900889  T
Q  188 aaactaaaagtgtcaaagcgcaaattgtttaaaagcatgttgattgtc 235  Q
    || |  |||||||||||   ||||| || |||||||||||||||||||    
T  7900890 aagccgaaagtgtcaaa-aacaaatggtataaaagcatgttgattgtc 7900936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 66 - 204
Target Start/End: Complemental strand, 38978997 - 38978858
Alignment:
Q  66 aagcctttttgaatagcaaaatcaatcatcgtaaacacaacattcatgaacctaggagaaattacatttctatgcatgaccctttgaactct-tgtaaaa 164  Q
    ||||||||||| || ||||||  |||  |||||||||||||||| || |||||| |||| || |||||  ||||||| ||| |||||||| | |||| ||    
T  38978997 aagcctttttggatggcaaaactaattttcgtaaacacaacattgataaacctatgagacatgacattgttatgcatcaccttttgaactatatgtagaa 38978898  T
Q  165 ggtccacaatctctgatgctaggaaactaaaagtgtcaaa 204  Q
    |||| ||   ||| | ||||||||||| ||||||||||||    
T  38978897 ggtcaacggcctcaggtgctaggaaaccaaaagtgtcaaa 38978858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 66 - 155
Target Start/End: Complemental strand, 25094770 - 25094681
Alignment:
Q  66 aagcctttttgaatagcaaaatcaatcatcgtaaacacaacattcatgaacctaggagaaattacatttctatgcatgaccctttgaact 155  Q
    ||||||||||  || ||||||  |||| |||| ||||||||||||||| || ||  ||| |||||||| |||||||||||| ||||||||    
T  25094770 aagcctttttagattgcaaaactaatcttcgtgaacacaacattcatggacttaaaagatattacattgctatgcatgaccatttgaact 25094681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 102 - 157
Target Start/End: Original strand, 44781 - 44836
Alignment:
Q  102 acaacattcatgaacctaggagaaattacatttctatgcatgaccctttgaactct 157  Q
    |||||||||||| |||||||| | || ||||| |||||||||||| ||||||||||    
T  44781 acaacattcatggacctaggaaacatgacattgctatgcatgaccttttgaactct 44836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 66 - 120
Target Start/End: Complemental strand, 7257754 - 7257700
Alignment:
Q  66 aagcctttttgaatagcaaaatcaatcatcgtaaacacaacattcatgaacctag 120  Q
    ||||||||||||||  |||||  |||| |||||||||||||||||||| ||||||    
T  7257754 aagcctttttgaatgacaaaactaatcttcgtaaacacaacattcatggacctag 7257700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 84 - 158
Target Start/End: Complemental strand, 25190114 - 25190040
Alignment:
Q  84 aaatcaatcatcgtaaacacaacattcatgaacctaggagaaattacatttctatgcatgaccctttgaactctt 158  Q
    ||||||||| || |||| |||||||||||  || |||| || | ||||||||||| |||||| ||||||||||||    
T  25190114 aaatcaatcctcttaaatacaacattcatatacttaggcgacactacatttctattcatgactctttgaactctt 25190040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 70 - 115
Target Start/End: Complemental strand, 465075 - 465030
Alignment:
Q  70 ctttttgaatagcaaaatcaatcatcgtaaacacaacattcatgaa 115  Q
    |||||||||| |||||||||||  | ||||||||||||||||||||    
T  465075 ctttttgaatggcaaaatcaatatttgtaaacacaacattcatgaa 465030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 70 - 119
Target Start/End: Original strand, 26276528 - 26276577
Alignment:
Q  70 ctttttgaatagcaaaatcaatcatcgtaaacacaacattcatgaaccta 119  Q
    ||||||| || |||||||||||| || ||||||||||||||||| |||||    
T  26276528 ctttttggatggcaaaatcaatcctcataaacacaacattcatggaccta 26276577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 78; Significance: 5e-36; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 69 - 264
Target Start/End: Complemental strand, 4413261 - 4413065
Alignment:
Q  69 cctttttgaatagcaaaatcaatcatcgtaaacacaacattcatgaacctaggagaaattacatttctatgcatgaccctttgaactct-tgtaaaaggt 167  Q
    |||||||| || |||||||||||| || | ||||||||||||||| |||||||||| || || || |||||||||||| ||||||| || |||| |||||    
T  4413261 cctttttggatggcaaaatcaatcctcatgaacacaacattcatggacctaggagacatgactttgctatgcatgaccttttgaaccctatgtagaaggt 4413162  T
Q  168 ccacaatctctgatgctaggaaactaaaagtgtcaaagcgcaaattgtttaaaagcatgttgattgtctgaaca-tttttctcgtgtttggccacttt 264  Q
    | |||||||||| |||||||||||  |||||||||||  |||||| || ||||||||||||||||||| |||||   |||||| ||||||||||||||    
T  4413161 caacaatctctggtgctaggaaaccgaaagtgtcaaa-agcaaatggtataaaagcatgttgattgtcagaacacgctttctcatgtttggccacttt 4413065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 69 - 268
Target Start/End: Original strand, 17344550 - 17344750
Alignment:
Q  69 cctttttgaatagcaaaatcaatcatcgtaaacacaacattcatgaacctaggagaaattacatttctatgcatgaccctttgaactct-tgtaaaaggt 167  Q
    |||||||| || | |||||||||| |||||||||||||||||||| |||||||||| || |||||  ||||||||||| |||||||||| |||| |||||    
T  17344550 cctttttggatcgaaaaatcaatcctcgtaaacacaacattcatggacctaggagacatgacattgttatgcatgaccttttgaactctatgtagaaggt 17344649  T
Q  168 ccacaatctctgatgctaggaaactaaaagtgtcaaagcgcaaattgtttaaaagcatgttgattgtctgaaca-tttttctcgtgtttggccactttac 266  Q
    | |||  || || |||||||||||| |||||||||||  |||||| || ||||||||||||||||||   ||||  ||||||||||||||||||| ||||    
T  17344650 caacagcctatggtgctaggaaactgaaagtgtcaaa-agcaaatggtataaaagcatgttgattgtgaaaacacgttttctcgtgtttggccaccttac 17344748  T
Q  267 tt 268  Q
    ||    
T  17344749 tt 17344750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 81 - 264
Target Start/End: Complemental strand, 41868091 - 41867907
Alignment:
Q  81 gcaaaatcaatcatcgtaaacacaacattcatgaacctaggagaaattacatttctatgcatgaccctttgaactct-tgtaaaaggtccacaatctctg 179  Q
    |||||| ||||| |||||||||||||||||||| |||| ||||| || |||||  ||||||||||| |||||||||| |||| |||||| |||  |||||    
T  41868091 gcaaaaccaatcctcgtaaacacaacattcatggacctgggagacatgacattgttatgcatgaccttttgaactctatgtagaaggtcaacagcctctg 41867992  T
Q  180 atgctaggaaactaaaagtgtcaaagcgcaaattgtttaaaagcatgttgattgtctgaacat-ttttctcgtgtttggccacttt 264  Q
     ||||||||| |  |||||||||||  |||||| || ||||||||||||||||||| ||||||  |||||| |||||| |||||||    
T  41867991 gtgctaggaacccgaaagtgtcaaa-agcaaatggtataaaagcatgttgattgtcagaacatgctttctcatgtttgaccacttt 41867907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 69 - 241
Target Start/End: Complemental strand, 9685610 - 9685438
Alignment:
Q  69 cctttttgaatagcaaaatcaatcatcgtaaacacaacattcatgaacctaggagaaattacatttctatgcatgaccctttgaactct-tgtaaaaggt 167  Q
    |||||||| || |||||| ||||| | || ||||||||||||||| |||||||||| || ||||| |||| ||||||| |||||||||| | || |||||    
T  9685610 cctttttggatggcaaaaacaatctttgtgaacacaacattcatggacctaggagacatgacattgctatccatgaccttttgaactctatatagaaggt 9685511  T
Q  168 ccacaatctctgatgctaggaaactaaaagtgtcaaagcgcaaattgtttaaaagcatgttgattgtctgaaca 241  Q
    |||||  ||||  |||||| |||  ||||||||||||  |||||| || ||||||||||||||||||| |||||    
T  9685510 ccacagcctctagtgctagaaaatcaaaagtgtcaaa-agcaaatggtataaaagcatgttgattgtcagaaca 9685438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 69 - 264
Target Start/End: Original strand, 27502274 - 27502470
Alignment:
Q  69 cctttttgaatagcaaaatcaatcatcgtaaacacaacattcatgaacctaggagaaattacatttctatgcatgaccctttgaactct-tgtaaaaggt 167  Q
    |||||||| || |||||||||||| |||||||||||||||||||  | |||||||| || | ||| |||||||| |||||||| | ||| |||| |||||    
T  27502274 cctttttggattgcaaaatcaatcttcgtaaacacaacattcatagatctaggagacatgatattgctatgcataaccctttggattctatgtagaaggt 27502373  T
Q  168 ccacaatctctgatgctaggaaactaaaagtgtcaaagcgcaaattgtttaaaagcatgttgattgtctgaaca-tttttctcgtgtttggccacttt 264  Q
    | ||| | | ||||||||||||    |||||||||||  || |||||| ||||||||||||| ||||| |||||  ||||||| |||||| |||||||    
T  27502374 caacagtatatgatgctaggaagtcgaaagtgtcaaaaagc-aattgtataaaagcatgttgtttgtcggaacacgttttctcatgtttgaccacttt 27502470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 89 - 204
Target Start/End: Original strand, 44686348 - 44686464
Alignment:
Q  89 aatcatcgtaaacacaacattcatgaacctaggagaaattacatttctatgcatgaccctttgaactct-tgtaaaaggtccacaatctctgatgctagg 187  Q
    |||| |||||||||||||||||| | |||||||||| || ||||| |||||||| |||||||| | ||| |||| |||||| |||| |||||||||||||    
T  44686348 aatcctcgtaaacacaacattcacggacctaggagacataacattgctatgcataaccctttggaatctatgtagaaggtcaacaaactctgatgctagg 44686447  T
Q  188 aaactaaaagtgtcaaa 204  Q
    || |  |||||||||||    
T  44686448 aagccgaaagtgtcaaa 44686464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 68 - 204
Target Start/End: Original strand, 13413262 - 13413399
Alignment:
Q  68 gcctttttgaatagcaaaatcaatcatcgtaaacacaacattcatgaacctaggagaaattacatttctatgcatgaccctttgaactct-tgtaaaagg 166  Q
    ||||||||| || |||||| ||||  || ||||||||||||||||| |||||||||| || |||||  ||||||||||| |||||||||| |||| ||||    
T  13413262 gcctttttggatggcaaaaccaattctcataaacacaacattcatggacctaggagacatgacattgttatgcatgaccttttgaactctatgtagaagg 13413361  T
Q  167 tccacaatctctgatgctaggaaactaaaagtgtcaaa 204  Q
    || |||  ||||| |||| | ||||  |||||||||||    
T  13413362 tcaacagcctctgctgcttgaaaaccgaaagtgtcaaa 13413399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 69 - 235
Target Start/End: Original strand, 28224912 - 28225078
Alignment:
Q  69 cctttttgaatagcaaaatcaatcatcgtaaacacaacattcatgaacctaggagaaattacatttctatgcatgaccctttgaactct-tgtaaaaggt 167  Q
    |||||||| || ||||||  |||| || ||||||||||||||||  |||||||||| || | |||   |||||| | |||||| ||||| |||| |||||    
T  28224912 cctttttggatggcaaaacaaatcttcataaacacaacattcattgacctaggagacataatattgtcatgcataatcctttggactctatgtagaaggt 28225011  T
Q  168 ccacaatctctgatgctaggaaactaaaagtgtcaaagcgcaaattgtttaaaagcatgttgattgtc 235  Q
    | |||| |||||| |||||||| |  |||||||||||  |||||| || |||||||||||||||||||    
T  28225012 caacaacctctgaagctaggaagccgaaagtgtcaaa-agcaaatggtataaaagcatgttgattgtc 28225078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 115 - 235
Target Start/End: Complemental strand, 20142874 - 20142754
Alignment:
Q  115 acctaggagaaattacatttctatgcatgaccctttgaactct-tgtaaaaggtccacaatctctgatgctaggaaactaaaagtgtcaaagcgcaaatt 213  Q
    |||||||||| || |||||  |||| |||||| |||||||||| |||| |||||| |||| || ||||||||| |||| ||||||||||||  | ||||     
T  20142874 acctaggagacatgacattgttatgtatgaccttttgaactctatgtataaggtcaacaacctttgatgctagaaaaccaaaagtgtcaaa-agaaaatg 20142776  T
Q  214 gtttaaaagcatgttgattgtc 235  Q
    || |||||||||||||||||||    
T  20142775 gtataaaagcatgttgattgtc 20142754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 78 - 119
Target Start/End: Complemental strand, 26407880 - 26407839
Alignment:
Q  78 atagcaaaatcaatcatcgtaaacacaacattcatgaaccta 119  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  26407880 atagcaaaatcaatcatcgtaaacacaacattcatgaaccta 26407839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 83 - 264
Target Start/End: Original strand, 5532347 - 5532527
Alignment:
Q  83 aaaatcaatcatcgtaaacacaacattcatgaacctaggagaaattacatttctatgcatgaccctttgaactct-tgtaaaaggtccacaatctctgat 181  Q
    |||||||||| | ||||||||| ||||||||||| ||||||  ||  ||||  | |||||||||||||||||||| |||| ||| || |||| || || |    
T  5532347 aaaatcaatccttgtaaacaca-cattcatgaacttaggagtcatggcattgttgtgcatgaccctttgaactctatgtagaagctcaacaacctatggt 5532445  T
Q  182 gctaggaaactaaaagtgtcaaagcgcaaattgtttaaaagcatgttgattgtctgaaca-tttttctcgtgtttggccacttt 264  Q
    |||||||| || |||||||||||  | |||| || |||||||||||||||||||  ||||  ||||||| |||||| |||||||    
T  5532446 gctaggaagct-aaagtgtcaaa-agtaaatagtataaaagcatgttgattgtcacaacacgttttctcatgtttgaccacttt 5532527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 60 - 201
Target Start/End: Complemental strand, 7761049 - 7760907
Alignment:
Q  60 gccgcgaagcctttttgaatagcaaaatcaatcatcgtaaacacaacattcatgaacctaggagaaattacatttctatgcatgaccctttgaactct-t 158  Q
    ||||| ||||||||||| ||  ||||||||||  |||||| |||| ||||| ||||| || |||| || ||||| ||| |||||| |||||||||||| |    
T  7761049 gccgctaagcctttttggatgtcaaaatcaattttcgtaagcacatcattcttgaacttatgagacatcacattgctacgcatgatcctttgaactctat 7760950  T
Q  159 gtaaaaggtccacaatctctgatgctaggaaactaaaagtgtc 201  Q
    ||| |||||| |||| ||||| || ||| |||| ||| |||||    
T  7760949 gtagaaggtcaacaacctctggtgatagaaaaccaaaggtgtc 7760907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 81 - 182
Target Start/End: Complemental strand, 16352027 - 16351925
Alignment:
Q  81 gcaaaatcaatcatcgtaaacacaacattcatgaacctaggagaaattacatttctatgcatgaccctttgaactct-tgtaaaaggtccacaatctctg 179  Q
    |||||| ||||||||||||||| || ||||||| ||||| |||| || |||||  | ||||||||| |||||||||| |||| |||||| |||| |||||    
T  16352027 gcaaaaacaatcatcgtaaacataatattcatgtacctaagagacatgacattgttgtgcatgaccatttgaactctatgtagaaggtcaacaacctctg 16351928  T
Q  180 atg 182  Q
    |||    
T  16351927 atg 16351925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 69 - 261
Target Start/End: Complemental strand, 18745149 - 18744956
Alignment:
Q  69 cctttttgaatagcaaaatcaatcatcgtaaacacaacattcatgaacctaggagaaattacatttctatgcatgaccctttgaactct-tgtaaaaggt 167  Q
    |||||||| || |||||| ||||| |  ||||||||||||||||  |||||||| | || ||||| |||||||||| | |||||||||| |||| ||||     
T  18745149 cctttttggatggcaaaaccaatccttataaacacaacattcatagacctaggaaatatgacattgctatgcatgatcttttgaactctatgtagaaggc 18745050  T
Q  168 ccacaatctctgatgctaggaaactaaaagtgtcaaagcgcaaattgtttaaaagcatgttgattgtctgaaca-tttttctcgtgtttggccac 261  Q
    | |||  || || |||||| |||   ||| |||||||  |||||| || |||||| |||||||||||| |||||   ||||||||||||||||||    
T  18745049 caacagcctatggtgctagaaaatcgaaaatgtcaaa-agcaaatggtataaaagtatgttgattgtcagaacacgctttctcgtgtttggccac 18744956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 60 - 201
Target Start/End: Original strand, 3825629 - 3825771
Alignment:
Q  60 gccgcgaagcctttttgaatagcaaaatcaatcatcgtaaacacaacattcatgaacctaggagaaattacatttctatgcatgaccctttgaactc-tt 158  Q
    ||||| ||| ||||||| ||  ||||||| ||| || ||||||||||||| |||  ||||| ||| || ||||| ||||||||||  ||||||||||  |    
T  3825629 gccgcaaagtctttttggatgacaaaatcgatcttcataaacacaacatttatggtcctagaagacatgacattgctatgcatgattctttgaactcgat 3825728  T
Q  159 gtaaaaggtccacaatctctgatgctaggaaactaaaagtgtc 201  Q
    ||  |||||| |||| || ||||||||||||| | ||||||||    
T  3825729 gttgaaggtcaacaacctttgatgctaggaaattgaaagtgtc 3825771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 82 - 167
Target Start/End: Complemental strand, 19161965 - 19161879
Alignment:
Q  82 caaaatcaatcatcgtaaacacaacattcatgaacctaggagaaattacatttctatgcatgaccctttgaactct-tgtaaaaggt 167  Q
    ||||||||||| ||| |||||||  ||||||  |||||||||| || |||||  ||||||||||| |||||||||| ||||||||||    
T  19161965 caaaatcaatcctcgaaaacacactattcattgacctaggagacatgacattgatatgcatgaccttttgaactctatgtaaaaggt 19161879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 68 - 241
Target Start/End: Complemental strand, 32029282 - 32029109
Alignment:
Q  68 gcctttttgaatagcaaaatcaatcatcgtaaacacaacattcatgaacctaggagaaattacatttctatgcatgaccctttgaactct-tgtaaaagg 166  Q
    ||||||||||||  || ||| |||| |||||||||| | |||||||| ||||  ||| || |||||  |||| ||||| ||||||||||| |||| ||||    
T  32029282 gcctttttgaatgacagaattaatcttcgtaaacacgatattcatgatcctataagacatgacattgttatggatgactctttgaactctatgtagaagg 32029183  T
Q  167 tccacaatctctgatgctaggaaactaaaagtgtcaaagcgcaaattgtttaaaagcatgttgattgtctgaaca 241  Q
    || |||  |||||| | | |||| || |||||||||||   |||||  | | |||||||||||||||||||||||    
T  32029182 tcaacagcctctgaagttgggaagctgaaagtgtcaaa-aacaaatgatatgaaagcatgttgattgtctgaaca 32029109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 71 - 182
Target Start/End: Complemental strand, 8036677 - 8036563
Alignment:
Q  71 tttttgaatagcaaaatcaatcatcgtaaacacaacattcatgaacctaggagaaattacatt--tctatgcatgaccctttgaactct-tgtaaaaggt 167  Q
    |||||||||  ||||||||||||| ||||| |||| ||  | | |||||||||| || |||||  | ||||||| | |||||||||||| ||||||||||    
T  8036677 tttttgaatgacaaaatcaatcattgtaaagacaatatctacggacctaggagacatgacattgatatatgcataaacctttgaactctatgtaaaaggt 8036578  T
Q  168 ccacaatctctgatg 182  Q
    | |||| ||||||||    
T  8036577 caacaacctctgatg 8036563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 98 - 235
Target Start/End: Complemental strand, 33612711 - 33612576
Alignment:
Q  98 aaacacaacattcatgaacctaggagaaattacatttctatgcatgaccctttgaactcttgtaaaaggtccacaatctctgatgctaggaaactaaaag 197  Q
    |||||||||||||||| ||||||| || |  ||||| |||||   |||||| |||||||| ||| || ||| |||| ||| | || |||||| | |||||    
T  33612711 aaacacaacattcatggacctaggggacaagacattgctatgagcgaccctctgaactct-gtagaatgtcaacaacctccggtgttaggaagccaaaag 33612613  T
Q  198 tgtcaaagcgcaaattgtttaaaagcatgttgattgtc 235  Q
    |||||||   |||||||| ||||| |||||||||||||    
T  33612612 tgtcaaata-caaattgtataaaatcatgttgattgtc 33612576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 75; Significance: 3e-34; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 55 - 264
Target Start/End: Complemental strand, 15292234 - 15292025
Alignment:
Q  55 actgagccgcgaagcctttttgaatagcaaaatcaatcatcgtaaacacaacattcatgaacctaggagaaattacatttctatgcatgaccctttgaac 154  Q
    |||| ||||| |||| |||||| || |||||||||||| || ||||||||||||||||| ||||||||||  | ||||| |||||||||||| |||||||    
T  15292234 actgcgccgccaagcttttttggatggcaaaatcaatcctcataaacacaacattcatggacctaggagatgtgacattgctatgcatgaccttttgaac 15292135  T
Q  155 tcttgtaaaaggtccacaatctctgatgctaggaaactaaaagtgtcaaagcgcaaattgtttaaaagcatgttgattgtctgaaca-tttttctcgtgt 253  Q
    | ||||| ||| || | || ||||  |||||| ||||||||||||| |||   |||||||| ||||| ||||||||||||| |||||  ||||||| |||    
T  15292134 ttttgtagaagatcaataacctctagtgctagaaaactaaaagtgt-aaaaaacaaattgtataaaaacatgttgattgtcagaacacgttttctcatgt 15292036  T
Q  254 ttggccacttt 264  Q
    |||||||||||    
T  15292035 ttggccacttt 15292025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 70 - 241
Target Start/End: Complemental strand, 13167104 - 13166933
Alignment:
Q  70 ctttttgaatagcaaaatcaatcatcgtaaacacaacattcatgaacctaggagaaattacatttctatgcatgaccctttgaactct-tgtaaaaggtc 168  Q
    ||||||| ||| || ||||||||||||||||| ||||||||||| |||||||||| ||  |||| |||||||| |||||||| ||||| |||| ||||||    
T  13167104 ctttttggataacagaatcaatcatcgtaaacccaacattcatggacctaggagacataccattgctatgcataaccctttggactctatgtagaaggtc 13167005  T
Q  169 cacaatctctgatgctaggaaactaaaagtgtcaaagcgcaaattgtttaaaagcatgttgattgtctgaaca 241  Q
     ||| |||||||||||||||| |  |||||||||||  |||||| || ||||||||||||||||||| |||||    
T  13167004 aacagtctctgatgctaggaagccgaaagtgtcaaa-agcaaatggtataaaagcatgttgattgtcagaaca 13166933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 68 - 264
Target Start/End: Complemental strand, 37873834 - 37873637
Alignment:
Q  68 gcctttttgaatagcaaaatcaatcatcgtaaacacaacattcatgaacctaggagaaattacatttctatgcatgaccctttgaactct-tgtaaaagg 166  Q
    ||||||||  ||||||||||||||| || ||||||||||||||||  |||||| ||  || |||||  | |||||||||||||||||||| |||| ||||    
T  37873834 gccttttttgatagcaaaatcaatcctcttaaacacaacattcatagacctagaagtcatgacattgttctgcatgaccctttgaactctatgtagaagg 37873735  T
Q  167 tccacaatctctgatgctaggaaactaaaagtgtcaaagcgcaaattgtttaaaagcatgttgattgtctgaaca-tttttctcgtgtttggccacttt 264  Q
    || |||| ||||| ||||||||| | ||||||||||||  |||||| || ||||| ||||||||||||| |||||   |||||| ||||||||||||||    
T  37873734 tcaacaacctctggtgctaggaagccaaaagtgtcaaa-agcaaatggtataaaaacatgttgattgtcagaacacgctttctcatgtttggccacttt 37873637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 69 - 242
Target Start/End: Original strand, 430514 - 430687
Alignment:
Q  69 cctttttgaatagcaaaatcaatcatcgtaaacacaacattcatgaacctaggagaaattacatttctatgcatgaccctttgaactct-tgtaaaaggt 167  Q
    |||||||| || ||| |||||||| |||||||||||||||||||| |||||||||| || ||||| |||||||| |||||||| | ||| |||| |||||    
T  430514 cctttttggatggcataatcaatcctcgtaaacacaacattcatggacctaggagacataacattactatgcataaccctttggaatctatgtagaaggt 430613  T
Q  168 ccacaatctctgatgctaggaaactaaaagtgtcaaagcgcaaattgtttaaaagcatgttgattgtctgaacat 242  Q
    | ||   ||||||||||| |||   ||||||||||||  |||||| || ||||||||||||||||||| ||||||    
T  430614 caactgcctctgatgctatgaagacaaaagtgtcaaa-agcaaatggtataaaagcatgttgattgtcagaacat 430687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 71 - 241
Target Start/End: Complemental strand, 32269990 - 32269820
Alignment:
Q  71 tttttgaatagcaaaatcaatcatcgtaaacacaacattcatgaacctaggagaaattacatttctatgcatgaccctttgaac-tcttgtaaaaggtcc 169  Q
    |||||| || || ||||||||| |||||||||||||||||||| |||||||||| || ||||| |||||||||||| ||||||| || || | ||||||     
T  32269990 tttttggatggcgaaatcaatcctcgtaaacacaacattcatggacctaggagacatgacattgctatgcatgaccttttgaacttcatgcagaaggtca 32269891  T
Q  170 acaatctctgatgctaggaaactaaaagtgtcaaagcgcaaattgtttaaaagcatgttgattgtctgaaca 241  Q
    |||| ||||  ||||||||||   ||||| |||||  |||||| || ||||||| ||||||||||| |||||    
T  32269890 acaacctctagtgctaggaaatcgaaagtatcaaa-agcaaatggtataaaagcgtgttgattgtcagaaca 32269820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 81 - 264
Target Start/End: Original strand, 35310372 - 35310556
Alignment:
Q  81 gcaaaatcaatcatcgtaaacacaacattcatgaacctaggagaaattacatttctatgcatgaccctttgaactct-tgtaaaaggtccacaatctctg 179  Q
    |||||| ||||  |||||||||||||||||||| |||||||||| || |||||  ||||||  |||||||| ||||| |||| |||||  |||  |||||    
T  35310372 gcaaaaccaattctcgtaaacacaacattcatggacctaggagacataacattgatatgcaaaaccctttggactctatgtagaaggttaacagcctctg 35310471  T
Q  180 atgctaggaaactaaaagtgtcaaagcgcaaattgtttaaaagcatgttgattgtctgaacat-ttttctcgtgtttggccacttt 264  Q
    |||| ||||| |  |||||||||||  ||| || || ||||||||||||||||||| ||||||  |||||| ||||||||||||||    
T  35310472 atgccaggaagccgaaagtgtcaaa-agcagatggtataaaagcatgttgattgtcagaacatgctttctcatgtttggccacttt 35310556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 88 - 264
Target Start/End: Complemental strand, 25663208 - 25663031
Alignment:
Q  88 caatcatcgtaaacacaacattcatgaacctaggagaaattacatttctatgcatgaccctttgaactct-tgtaaaaggtccacaatctctgatgctag 186  Q
    ||||| |||||||| ||||||||||| ||||||| || || |||||  ||||||| |||||||| ||||| |||| ||| || ||||  |||||||||||    
T  25663208 caatcctcgtaaactcaacattcatggacctaggggacataacattgatatgcataaccctttggactctatgtagaagatcaacaacttctgatgctag 25663109  T
Q  187 gaaactaaaagtgtcaaagcgcaaattgtttaaaagcatgttgattgtctgaaca-tttttctcgtgtttggccacttt 264  Q
    ||| || |||||||||||  |||||| || ||||| |||||||||| || |||||   |||||| ||||||||||||||    
T  25663108 gaagctgaaagtgtcaaa-agcaaatggtataaaaacatgttgattatcagaacacgctttctcatgtttggccacttt 25663031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 70 - 261
Target Start/End: Original strand, 42921611 - 42921802
Alignment:
Q  70 ctttttgaatagcaaaatcaatcatcgtaaacacaacattcatgaacctaggagaaattacatttctatgcatgaccctttgaactct-tgtaaaaggtc 168  Q
    ||||||| || |||||| ||||| | |||||||||| ||| ||| || ||||||| || |||||  ||||||||||| | |||||||| |||| |||| |    
T  42921611 ctttttggatggcaaaaccaatccttgtaaacacaatatt-atggacttaggagacatgacattgttatgcatgaccttctgaactctatgtagaaggcc 42921709  T
Q  169 cacaatctctgatgctaggaaactaaaagtgtcaaagcgcaaattgtttaaaagcatgttgattgtctgaaca-tttttctcgtgtttggccac 261  Q
     |||| ||||| |||||||||||  ||||||||| |  |||||| || ||||||||||||||||||| |||||  |||||||||||||| ||||    
T  42921710 aacaacctctggtgctaggaaaccgaaagtgtcataa-gcaaatggtataaaagcatgttgattgtcagaacacgttttctcgtgtttgaccac 42921802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 69 - 157
Target Start/End: Complemental strand, 2566290 - 2566202
Alignment:
Q  69 cctttttgaatagcaaaatcaatcatcgtaaacacaacattcatgaacctaggagaaattacatttctatgcatgaccctttgaactct 157  Q
    |||||||| || |||||||||||| |||||||||||||||| ||| | |||||||| || ||||| |||||||||||| ||||||||||    
T  2566290 cctttttggatggcaaaatcaatcctcgtaaacacaacattgatggatctaggagacatgacattgctatgcatgaccttttgaactct 2566202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 93 - 264
Target Start/End: Complemental strand, 33692225 - 33692054
Alignment:
Q  93 atcgtaaacacaacattcatgaacctaggagaaattacatttctatgcatgaccctttgaactct-tgtaaaaggtccacaatctctgatgctaggaaac 191  Q
    |||||||||| |||||||||||||||| |||| || |||||  ||||||| |||||||| || || |||| |||||| ||| |||||||||||| ||| |    
T  33692225 atcgtaaacagaacattcatgaacctatgagacataacattgttatgcat-accctttggacactatgtagaaggtcaacagtctctgatgctaagaagc 33692127  T
Q  192 taaaagtgtcaaagcgcaaattgtttaaaagcatgttgattgtctgaaca-tttttctcgtgtttggccacttt 264  Q
      |||||||||||  |||||| ||  ||||||||||||||||||  ||||  |||| || ||||||||||||||    
T  33692126 cgaaagtgtcaaa-agcaaatggtacaaaagcatgttgattgtcataacacgttttgtcatgtttggccacttt 33692054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 68 - 153
Target Start/End: Original strand, 23023506 - 23023591
Alignment:
Q  68 gcctttttgaatagcaaaatcaatcatcgtaaacacaacattcatgaacctaggagaaattacatttctatgcatgaccctttgaa 153  Q
    ||||||||| ||  ||||||||||| |||||||||||||||||||  |||||||||| || |||||  ||||||||||| ||||||    
T  23023506 gcctttttggatgacaaaatcaatcttcgtaaacacaacattcatcgacctaggagacatgacattgatatgcatgaccttttgaa 23023591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 94 - 185
Target Start/End: Complemental strand, 22188825 - 22188733
Alignment:
Q  94 tcgtaaacacaacattcatgaacctaggagaaattacatttctatgcatgaccctttgaactct-tgtaaaaggtccacaatctctgatgcta 185  Q
    |||||||||||||||||||||| |||||||| || | |||  ||||||||||| |||||||||| |||| |||||| |||  ||||| |||||    
T  22188825 tcgtaaacacaacattcatgaatctaggagacatgatattgttatgcatgaccttttgaactctatgtagaaggtcaacagcctctggtgcta 22188733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 88 - 241
Target Start/End: Original strand, 38875570 - 38875722
Alignment:
Q  88 caatcatcgtaaacacaacattcatgaacctaggagaaattacatttctatgcatgaccctttgaactct-tgtaaaaggtccacaatctctgatgctag 186  Q
    |||||||||||||||||||| ||||  |||||||||| |  |||||  ||||||||||| ||||||||||  ||| ||||||  ||  ||||| ||||||    
T  38875570 caatcatcgtaaacacaaca-tcattgacctaggagacaagacattgttatgcatgaccttttgaactctacgtagaaggtcagcagcctctggtgctag 38875668  T
Q  187 gaaactaaaagtgtcaaagcgcaaattgtttaaaagcatgttgattgtctgaaca 241  Q
    ||| || |||||||||||   ||||| ||  |||| ||||||||||||| |||||    
T  38875669 gaagctgaaagtgtcaaa-aacaaatggtacaaaaacatgttgattgtcagaaca 38875722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 81 - 158
Target Start/End: Original strand, 16017097 - 16017174
Alignment:
Q  81 gcaaaatcaatcatcgtaaacacaacattcatgaacctaggagaaattacatttctatgcatgaccctttgaactctt 158  Q
    ||||||||||||||| |||| || |||  ||| ||||||||||| |  ||||| |||||||||||| |||||||||||    
T  16017097 gcaaaatcaatcatcttaaaaaccacacccataaacctaggagacacaacattgctatgcatgaccttttgaactctt 16017174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 89 - 157
Target Start/End: Original strand, 19260236 - 19260304
Alignment:
Q  89 aatcatcgtaaacacaacattcatgaacctaggagaaattacatttctatgcatgaccctttgaactct 157  Q
    |||||||||||||| ||||||||||||  ||  ||| ||||||||  |||| |||||||||||||||||    
T  19260236 aatcatcgtaaacataacattcatgaatatataagacattacattgttatgtatgaccctttgaactct 19260304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 78 - 112
Target Start/End: Original strand, 43349981 - 43350015
Alignment:
Q  78 atagcaaaatcaatcatcgtaaacacaacattcat 112  Q
    ||||||||||||||||| |||||||||||||||||    
T  43349981 atagcaaaatcaatcattgtaaacacaacattcat 43350015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 81 - 146
Target Start/End: Original strand, 15809973 - 15810038
Alignment:
Q  81 gcaaaatcaatcatcgtaaacacaacattcatgaacctaggagaaattacatttctatgcatgacc 146  Q
    |||||||||||| |||| ||||| |||||||||  ||||||||| || ||||| |||| |||||||    
T  15809973 gcaaaatcaatcctcgtgaacacgacattcatgggcctaggagacatgacattgctatacatgacc 15810038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 72; Significance: 2e-32; HSPs: 33)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 69 - 235
Target Start/End: Original strand, 3329908 - 3330074
Alignment:
Q  69 cctttttgaatagcaaaatcaatcatcgtaaacacaacattcatgaacctaggagaaattacatttctatgcatgaccctttgaactct-tgtaaaaggt 167  Q
    |||||||| || |||||| ||||||||||||||||| |||||||| |||||||||| || ||||| |||||||| |||||||| ||||| |||| |||||    
T  3329908 cctttttggatggcaaaaccaatcatcgtaaacacagcattcatggacctaggagacataacattgctatgcataaccctttggactctatgtagaaggt 3330007  T
Q  168 ccacaatctctgatgctaggaaactaaaagtgtcaaagcgcaaattgtttaaaagcatgttgattgtc 235  Q
    | ||   ||||||||||||||| | ||||||||||||  |||||| || |||||||||||||||||||    
T  3330008 caactgcctctgatgctaggaagccaaaagtgtcaaa-agcaaatagtataaaagcatgttgattgtc 3330074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 71 - 203
Target Start/End: Original strand, 4419177 - 4419310
Alignment:
Q  71 tttttgaatagcaaaatcaatcatcgtaaacacaacattcatgaacctaggagaaattacatttctatgcatgaccctttgaactct-tgtaaaaggtcc 169  Q
    |||||| || |||||| |||||||||||||||||||||||||| |||||||||| || |||||  ||||||| |||||||||||||| |||| ||||||     
T  4419177 tttttggatggcaaaaccaatcatcgtaaacacaacattcatggacctaggagacataacattgttatgcataaccctttgaactctatgtagaaggtca 4419276  T
Q  170 acaatctctgatgctaggaaactaaaagtgtcaa 203  Q
    |||| ||||||||||| ||| |  ||||||||||    
T  4419277 acaacctctgatgctacgaagccgaaagtgtcaa 4419310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 70 - 241
Target Start/End: Complemental strand, 50001120 - 50000948
Alignment:
Q  70 ctttttgaatagcaaaatcaatcatcgtaaacacaacattcatgaacctaggagaaattacatttctatgcatgaccctttgaactct-tgtaaaaggtc 168  Q
    ||||||| || |||||||||||| |||||||||||||||| ||| | |||||||| || ||||| |||||||| |||||||| ||| | |||| ||||||    
T  50001120 ctttttggatggcaaaatcaatcttcgtaaacacaacatttatggatctaggagacataacattgctatgcataaccctttggactatatgtagaaggtc 50001021  T
Q  169 cacaatctctgatgctaggaaactaaaagtgtcaaagcgcaaattgt-ttaaaagcatgttgattgtctgaaca 241  Q
     ||   |||||||||||| || | ||||||||||||  ||||||||| |||||||||||||||||||| |||||    
T  50001020 aactgcctctgatgctagaaagccaaaagtgtcaaa-agcaaattgtattaaaagcatgttgattgtcagaaca 50000948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 69 - 264
Target Start/End: Original strand, 53619498 - 53619694
Alignment:
Q  69 cctttttgaatagcaaaatcaatcatcgtaaacacaacattcatgaacctaggagaaattacatttctatgcatgaccctttgaactct-tgtaaaaggt 167  Q
    |||||||| || |||||| ||||  |||||||||||||||||||| ||||| |||| || |||||  ||||||| |||||||  ||||| |||| |||||    
T  53619498 cctttttggatggcaaaaccaattctcgtaaacacaacattcatggacctaagagacataacattgttatgcataaccctttagactctatgtagaaggt 53619597  T
Q  168 ccacaatctctgatgctaggaaactaaaagtgtcaaagcgcaaattgtttaaaagcatgttgattgtctgaaca-tttttctcgtgtttggccacttt 264  Q
    | ||   |||||||||||||||   ||||||||||||   ||||| || ||||||||||||||||||| |||||  ||||||| ||||||||||||||    
T  53619598 caactgcctctgatgctaggaagtcaaaagtgtcaaa-aacaaatggtataaaagcatgttgattgtcagaacacgttttctcatgtttggccacttt 53619694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 69 - 204
Target Start/End: Original strand, 25504207 - 25504343
Alignment:
Q  69 cctttttgaatagcaaaatcaatcatcgtaaacacaacattcatgaacctaggagaaattacatttctatgcatgaccctttgaactct-tgtaaaaggt 167  Q
    ||||||||||| |||||| ||||| || ||||||||| ||||||| ||||| |||| || ||||| |||||||||||| ||| |||||| | ||||||||    
T  25504207 cctttttgaatggcaaaagcaatcctcataaacacaatattcatggacctatgagacatgacattactatgcatgaccttttaaactctatttaaaaggt 25504306  T
Q  168 ccacaatctctgatgctaggaaactaaaagtgtcaaa 204  Q
    | ||| |||||  ||||||||||| |||| |||||||    
T  25504307 caacagtctctagtgctaggaaaccaaaaatgtcaaa 25504343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 71 - 264
Target Start/End: Complemental strand, 55933653 - 55933461
Alignment:
Q  71 tttttgaatagcaaaatcaatcatcgtaaacacaacattcatgaacctaggagaaattacatttctatgcatgaccctttgaactct-tgtaaaaggtcc 169  Q
    |||||| || ||||||||||||||||||||||||||||||| | |||||||||| || | |||  |||| || |||||||| ||||| |||| ||||||     
T  55933653 tttttggatggcaaaatcaatcatcgtaaacacaacattcacggacctaggagacataatattgttatgtataaccctttggactctatgtagaaggtca 55933554  T
Q  170 acaatctctgatgctaggaaactaaaagtgtcaaagcgcaaattgtttaaaagcatgttgattgtctgaac-atttttctcgtgtttggccacttt 264  Q
    ||||   |||||||||||||    |||||||||||  |||||| || ||||||||||||||||||  |||| |  |||||| ||||||||||||||    
T  55933553 acaa--cctgatgctaggaagtcgaaagtgtcaaa-agcaaatggtataaaagcatgttgattgttagaacaaactttctcatgtttggccacttt 55933461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 69 - 204
Target Start/End: Original strand, 53170424 - 53170561
Alignment:
Q  69 cctttttgaatagcaaaatcaatcatcgtaaacacaacattcatgaac-ctaggagaaattacatttctatgcatgaccctttgaactct-tgtaaaagg 166  Q
    |||||||  ||||||||||||||| |||| |||||||||||||||| |  ||||||| || ||||| |||||||||||| |||||||||| |||| ||||    
T  53170424 cctttttagatagcaaaatcaatcctcgtgaacacaacattcatgacctataggagacatgacattgctatgcatgaccttttgaactctatgtagaagg 53170523  T
Q  167 tccacaatctctgatgctaggaaactaaaagtgtcaaa 204  Q
    || |||  ||||| |||||| ||||  |||||||||||    
T  53170524 tcaacagcctctggtgctagcaaaccgaaagtgtcaaa 53170561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 81 - 241
Target Start/End: Complemental strand, 56462289 - 56462129
Alignment:
Q  81 gcaaaatcaatcatcgtaaacacaacattcatgaacctaggagaaattacatttctatgcatgaccctttgaactct-tgtaaaaggtccacaatctctg 179  Q
    |||||| ||||  |||||||||||||||| ||| || ||||||| || |||||   |||||||| |||||||||||| |||| |||||| |||| |||||    
T  56462289 gcaaaaccaattctcgtaaacacaacatttatggacttaggagacatgacattgtcatgcatgatcctttgaactctatgtagaaggtcaacaacctctg 56462190  T
Q  180 atgctaggaaactaaaagtgtcaaagcgcaaattgtttaaaagcatgttgattgtctgaaca 241  Q
     ||||||||||| ||||||||| ||   ||||| || ||||| ||||||||||||| |||||    
T  56462189 gtgctaggaaaccaaaagtgtctaa-aacaaatggtataaaaacatgttgattgtcagaaca 56462129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 84 - 187
Target Start/End: Original strand, 16955387 - 16955491
Alignment:
Q  84 aaatcaatcatcgtaaacacaacattcatgaacctaggagaaattacatttctatgcatgaccctttgaactct-tgtaaaaggtccacaatctctgatg 182  Q
    ||||||||| ||||||||||||||||||||  ||||||||| || ||||| |||||||||||| |||||||||| |||| ||||||  ||| ||||| ||    
T  16955387 aaatcaatcctcgtaaacacaacattcatgggcctaggagacatgacattgctatgcatgaccttttgaactctatgtagaaggtcagcaacctctggtg 16955486  T
Q  183 ctagg 187  Q
    |||||    
T  16955487 ctagg 16955491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 71 - 264
Target Start/End: Complemental strand, 600885 - 600691
Alignment:
Q  71 tttttgaatagcaaaatcaatcatcgtaaacacaacattcatgaacctaggagaaattacatttctatgcatgaccctttgaactct-tgtaaaaggtcc 169  Q
    |||||| || ||||||  |||||||||||||||| |||| ||| |||||||||| || ||||   ||| ||||||| |||||||||| |||| ||||||     
T  600885 tttttggatggcaaaactaatcatcgtaaacacagcattaatggacctaggagacatgacatagttatacatgaccttttgaactctatgtagaaggtca 600786  T
Q  170 acaatctctgatgctaggaaactaaaagtgtcaaagcgcaaattgtttaaaagcatgttgattgtctgaaca-tttttctcgtgtttggccacttt 264  Q
    |||| ||||| || ||||||||  |||||| ||||  |||||| || |||||||||||| |||||  |||||  ||||||| ||||||| ||||||    
T  600785 acaacctctggtgttaggaaaccgaaagtgacaaa-agcaaatggtataaaagcatgttaattgttagaacacgttttctcatgtttggtcacttt 600691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 82 - 263
Target Start/End: Complemental strand, 34107878 - 34107694
Alignment:
Q  82 caaaatcaatcatcgtaaacacaacattcatgaacctaggagaaattacatttctatgcatgaccctttgaactct-tgtaaaaggtccacaatctctga 180  Q
    ||||| ||||| |||| ||||||||||||||| | |||||||| || |||||  ||||||||||  |||||||||| |||| |||||| |||  |||||     
T  34107878 caaaaccaatcctcgtgaacacaacattcatggatctaggagacataacattgttatgcatgactttttgaactctatgtagaaggtcaacagcctctgg 34107779  T
Q  181 tgctaggaaactaaaagtgtcaaagcgcaaattgtttaaaagcatgttgattgtctgaaca---tttttctcgtgtttggccactt 263  Q
    ||||||||||   |||||||||||   ||||| || ||||| |||||||||| ||||||||    ||||||| |||||||||||||    
T  34107778 tgctaggaaatcgaaagtgtcaaa-aacaaatggtataaaaacatgttgattatctgaacacacgttttctcatgtttggccactt 34107694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 82 - 235
Target Start/End: Complemental strand, 7536753 - 7536600
Alignment:
Q  82 caaaatcaatcatcgtaaacacaacattcatgaacctaggagaaattacatttctatgcatgaccctttgaactct-tgtaaaaggtccacaatctctga 180  Q
    ||||| ||||||| ||||||| |||||||||| | ||| |||| || | ||| ||||||| || | |||||||||| |||| |||||| |||| |||||     
T  7536753 caaaaccaatcattgtaaacataacattcatggatctacgagacataaaattgctatgcacgatcatttgaactctatgtagaaggtcaacaacctctgg 7536654  T
Q  181 tgctaggaaactaaaagtgtcaaagcgcaaattgtttaaaagcatgttgattgtc 235  Q
    |||||||||||| ||| |||||||   |||||||| ||||| |||||||||||||    
T  7536653 tgctaggaaactgaaattgtcaaa-aacaaattgtataaaaacatgttgattgtc 7536600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 70 - 156
Target Start/End: Original strand, 23242813 - 23242899
Alignment:
Q  70 ctttttgaatagcaaaatcaatcatcgtaaacacaacattcatgaacctaggagaaattacatttctatgcatgaccctttgaactc 156  Q
    ||||||| ||| |||||||||||||||||||||||| ||| ||| ||||| ||||||| |||||  ||||||||||||||| |||||    
T  23242813 ctttttggataacaaaatcaatcatcgtaaacacaatatttatggacctaagagaaatgacattgttatgcatgaccctttaaactc 23242899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 96 - 241
Target Start/End: Original strand, 132324 - 132469
Alignment:
Q  96 gtaaacacaacattcatgaacctaggagaaattacatttctatgcatgaccctttgaactct-tgtaaaaggtccacaatctctgatgctaggaaactaa 194  Q
    |||||||||||| |||||||||||  ||| || |||||  ||||| ||||||||| |||||| |||| || ||| ||||||||||||  ||||||||  |    
T  132324 gtaaacacaacaatcatgaacctaaaagacatgacattgttatgcttgaccctttaaactctgtgtagaatgtcaacaatctctgatattaggaaaccga 132423  T
Q  195 aagtgtcaaagcgcaaattgtttaaaagcatgttgattgtctgaaca 241  Q
    |||||| |||   ||||| || ||||||||||||||||||| |||||    
T  132424 aagtgt-aaaaaacaaatggtataaaagcatgttgattgtcagaaca 132469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 21 - 155
Target Start/End: Original strand, 8738069 - 8738203
Alignment:
Q  21 aattacacatgagtgaaagacaaacaggtaaaacactgagccgcgaagcctttttgaatagcaaaatcaatcatcgtaaacacaacattcatgaacctag 120  Q
    |||||||||||| ||||||  || | | ||| | |||| ||||| || | |||||| ||  ||||||||||| | ||| ||||||||||||||||||||     
T  8738069 aattacacatgaatgaaaggtaagcggataacaaactgcgccgctaaacttttttggatgacaaaatcaatctttgtatacacaacattcatgaacctaa 8738168  T
Q  121 gagaaattacatttctatgcatgaccctttgaact 155  Q
    |||| || |||||| ||||||||| ||||||||||    
T  8738169 gagacatgacatttttatgcatgagcctttgaact 8738203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 60 - 200
Target Start/End: Original strand, 26521392 - 26521532
Alignment:
Q  60 gccgcgaagcctttttgaatagcaaaatcaatcatcgtaaacacaacattcatgaacctaggagaaattacatttctatgcatgaccctttgaactct-t 158  Q
    ||||| || |||||||| ||  ||||| ||||| |||||||||||||| |||||  ||||||| | || ||||| ||| ||||||||||||||||| | |    
T  26521392 gccgctaaacctttttggatgacaaaaccaatcctcgtaaacacaaca-tcatgggcctaggatacatgacattgctacgcatgaccctttgaactgtat 26521490  T
Q  159 gtaaaaggtccacaatctctgatgctaggaaactaaaagtgt 200  Q
    ||| |||||| |||  ||||| ||||||||||| ||||||||    
T  26521491 gtagaaggtcaacagcctctggtgctaggaaaccaaaagtgt 26521532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 88 - 152
Target Start/End: Complemental strand, 18981714 - 18981651
Alignment:
Q  88 caatcatcgtaaacacaacattcatgaacctaggagaaattacatttctatgcatgaccctttga 152  Q
    |||||||||||||||||||||||||| ||||| |||| || ||||| ||||||||||||||||||    
T  18981714 caatcatcgtaaacacaacattcatggaccta-gagacatgacattactatgcatgaccctttga 18981651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 69 - 204
Target Start/End: Original strand, 39001309 - 39001445
Alignment:
Q  69 cctttttgaatagcaaaatcaatcatcgtaaacacaacattcatgaacctaggagaaattacatttctatgcatgaccctttgaactct-tgtaaaaggt 167  Q
    |||||||| ||  ||||| ||||| |||||||||||||||||||| |||||||||| |  |||||  ||||||| | |||||| ||||| |||| |||||    
T  39001309 cctttttggatgacaaaaccaatcctcgtaaacacaacattcatggacctaggagacacaacattgttatgcataatcctttggactctatgtagaaggt 39001408  T
Q  168 ccacaatctctgatgctaggaaactaaaagtgtcaaa 204  Q
    | ||   ||||||| ||||||| | ||||||||||||    
T  39001409 caactgcctctgatcctaggaagccaaaagtgtcaaa 39001445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 66 - 149
Target Start/End: Complemental strand, 23233312 - 23233229
Alignment:
Q  66 aagcctttttgaatagcaaaatcaatcatcgtaaacacaacattcatgaacctaggagaaattacatttctatgcatgaccctt 149  Q
    ||||||||||| ||||| ||||||||| || |||| |||||||||||||| |||||| | || |||||  ||||||||||||||    
T  23233312 aagcctttttggatagccaaatcaatcctcataaagacaacattcatgaatctaggaaacatgacattattatgcatgaccctt 23233229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 136 - 261
Target Start/End: Complemental strand, 43849476 - 43849350
Alignment:
Q  136 tatgcatgaccctttgaactc-ttgtaaaaggtccacaatctctgatgctaggaaactaaaagtgtcaaagcgcaaattgtttaaaagcatgttgattgt 234  Q
    ||||||||||| ||||||||| ||||| ||| ||||||| || || | ||||||| | |||||||||||| | ||||| || ||||||||||||| || |    
T  43849476 tatgcatgaccatttgaactctttgtagaagatccacaacctttggttctaggaagccaaaagtgtcaaa-cacaaatagtataaaagcatgttggttat 43849378  T
Q  235 ctgaaca-tttttctcgtgtttggccac 261  Q
    |||||||   ||||||||||||||||||    
T  43849377 ctgaacacgctttctcgtgtttggccac 43849350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 99 - 255
Target Start/End: Complemental strand, 6865984 - 6865828
Alignment:
Q  99 aacacaacattcatgaacctaggagaaattacatttctatgcatgaccctttgaactct-tgtaaaaggtccacaatctctgatgctaggaaactaaaag 197  Q
    |||| ||||||||||| | ||||||| || ||||| |||||||| |||||||||||||| ||||||||||  ||||  |||  ||||| ||| || ||||    
T  6865984 aacagaacattcatgatc-taggagacatgacattgctatgcattaccctttgaactctatgtaaaaggttaacaacatctagtgctatgaagctcaaag 6865886  T
Q  198 tgtcaaagcgcaaattgtttaaaagcatgttgattgtctgaaca-tttttctcgtgttt 255  Q
    |||||||  ||||||  | ||||||||||||||| ||| |||||  |||||||||||||    
T  6865885 tgtcaaa-agcaaatgatataaaagcatgttgatagtcagaacacgttttctcgtgttt 6865828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 81 - 142
Target Start/End: Complemental strand, 48657098 - 48657037
Alignment:
Q  81 gcaaaatcaatcatcgtaaacacaacattcatgaacctaggagaaattacatttctatgcat 142  Q
    ||||||||||||||||||||||||||||||||  ||||| |||| || ||||| ||||||||    
T  48657098 gcaaaatcaatcatcgtaaacacaacattcatagacctatgagacataacattgctatgcat 48657037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 81 - 157
Target Start/End: Original strand, 23255637 - 23255713
Alignment:
Q  81 gcaaaatcaatcatcgtaaacacaacattcatgaacctaggagaaattacatttctatgcatgaccctttgaactct 157  Q
    |||||||||||| |||||||||||| ||||||| || ||||||| || |||||  ||||||| |||||||| |||||    
T  23255637 gcaaaatcaatcctcgtaaacacaatattcatggacttaggagacataacattgttatgcataaccctttggactct 23255713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 69 - 157
Target Start/End: Complemental strand, 30940927 - 30940839
Alignment:
Q  69 cctttttgaatagcaaaatcaatcatcgtaaacacaacattcatgaacctaggagaaattacatttctatgcatgaccctttgaactct 157  Q
    |||||||| || |||||||||||| || | ||||||||||||||  |||||||| | || |||||  ||||||||||| ||||||||||    
T  30940927 cctttttggatggcaaaatcaatcctcatgaacacaacattcatagacctaggatatatgacattgttatgcatgaccttttgaactct 30940839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 89 - 204
Target Start/End: Complemental strand, 38535744 - 38535628
Alignment:
Q  89 aatcatcgtaaacacaacattcatgaacctaggagaaattacatttctatgcatgaccctttgaactct-tgtaaaaggtccacaatctctgatgctagg 187  Q
    |||| ||||||||||||||| |||| |||||  ||| || ||||| ||||||||||| ||||||||||| |||| | |||  |||| ||||| |||||||    
T  38535744 aatcctcgtaaacacaacatccatggacctataagacatgacattgctatgcatgactctttgaactctatgtagagggtgaacaacctctggtgctagg 38535645  T
Q  188 aaactaaaagtgtcaaa 204  Q
    ||   ||||||||||||    
T  38535644 aagtcaaaagtgtcaaa 38535628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 82 - 155
Target Start/End: Complemental strand, 49344325 - 49344248
Alignment:
Q  82 caaaatcaatcatcgtaaacacaacatt----catgaacctaggagaaattacatttctatgcatgaccctttgaact 155  Q
    |||||||||||||| |||||||||||||    |||| | |||||||| ||||||||||||||  ||||||||| ||||    
T  49344325 caaaatcaatcatcataaacacaacattaattcatggatctaggagacattacatttctatgagtgaccctttaaact 49344248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 69 - 133
Target Start/End: Complemental strand, 50442674 - 50442610
Alignment:
Q  69 cctttttgaatagcaaaatcaatcatcgtaaacacaacattcatgaacctaggagaaattacatt 133  Q
    |||||||| || |||||| ||||| || |||||||||||| ||||||||||||||| || |||||    
T  50442674 cctttttggatggcaaaaccaatcctcttaaacacaacatccatgaacctaggagacataacatt 50442610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 140 - 235
Target Start/End: Complemental strand, 50483320 - 50483225
Alignment:
Q  140 catgaccctttgaactct-tgtaaaaggtccacaatctctgatgctaggaaactaaaagtgtcaaagcgcaaattgtttaaaagcatgttgattgtc 235  Q
    ||||||| |||||||||| |||| |||||| |||| ||||| |||||||||||  |||||||| ||  |||||| || ||||| |||||||||||||    
T  50483320 catgaccttttgaactctatgtagaaggtcaacaacctctggtgctaggaaaccgaaagtgtcgaa-agcaaatggtataaaatcatgttgattgtc 50483225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 83 - 118
Target Start/End: Original strand, 1041351 - 1041386
Alignment:
Q  83 aaaatcaatcatcgtaaacacaacattcatgaacct 118  Q
    |||||||||||||| |||||||||||||||||||||    
T  1041351 aaaatcaatcatcgaaaacacaacattcatgaacct 1041386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 82 - 204
Target Start/End: Complemental strand, 46441071 - 46440948
Alignment:
Q  82 caaaatcaatcatcgtaaacacaacattcatgaacctaggagaaattacatttctatgcatgaccctttgaactct-tgtaaaaggtccacaatctctga 180  Q
    ||||||||||||||||||| | ||  |||||||||||| |||| ||  |||| |||||||  |||||||| ||||| |||| ||||||  ||   |||||    
T  46441071 caaaatcaatcatcgtaaatataattttcatgaacctatgagacatagcattgctatgcacaaccctttggactctatgtagaaggtcagcagcttctga 46440972  T
Q  181 tgctaggaaactaaaagtgtcaaa 204  Q
    ||||||||| |  |||||||||||    
T  46440971 tgctaggaagccgaaagtgtcaaa 46440948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 70 - 157
Target Start/End: Complemental strand, 50464490 - 50464403
Alignment:
Q  70 ctttttgaatagcaaaatcaatcatcgtaaacacaacattcatgaacctaggagaaattacatttctatgcatgaccctttgaactct 157  Q
    ||||||| || ||||||| |||| |||||||||||||||||||  |  | ||||| || |||||  ||||||||||||||| ||||||    
T  50464490 ctttttggatggcaaaataaatcctcgtaaacacaacattcatatatttgggagacatgacattgttatgcatgaccctttaaactct 50464403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 139 - 204
Target Start/End: Original strand, 53098403 - 53098469
Alignment:
Q  139 gcatgaccctttgaactct-tgtaaaaggtccacaatctctgatgctaggaaactaaaagtgtcaaa 204  Q
    |||||||| |||||||||| |||| |||||  |||| ||||||||||||||||| |||| |||||||    
T  53098403 gcatgaccatttgaactctatgtagaaggttaacaacctctgatgctaggaaaccaaaaatgtcaaa 53098469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 70 - 155
Target Start/End: Original strand, 45661604 - 45661689
Alignment:
Q  70 ctttttgaatagcaaaatcaatcatcgtaaacacaacattcatgaacctaggagaaattacatttctatgcatgaccctttgaact 155  Q
    ||||||| |||| |||| ||||| |||||||||||| ||||||| ||||| |||  || |||||  | || |||||||||||||||    
T  45661604 ctttttggatagtaaaaccaatcctcgtaaacacaatattcatggacctacgagttatgacattgttgtgtatgaccctttgaact 45661689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 72; Significance: 2e-32; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 71 - 264
Target Start/End: Original strand, 34644480 - 34644674
Alignment:
Q  71 tttttgaatagcaaaatcaatcatcgtaaacacaacattcatgaacctaggagaaattacatttctatgcatgaccctttgaactct-tgtaaaaggtcc 169  Q
    |||||| || ||||||||||||||||||||||||||||||||| |||||||||| || |||||  ||||||| |||||||| ||||| |||| ||||||     
T  34644480 tttttggatggcaaaatcaatcatcgtaaacacaacattcatggacctaggagacataacattgatatgcataaccctttggactctatgtagaaggtca 34644579  T
Q  170 acaatctctgatgctaggaaactaaaagtgtcaaagcgcaaattgtttaaaagcatgttgattgtctgaaca-tttttctcgtgtttggccacttt 264  Q
    |||| ||||||||||||||| |  |||||||||||   ||||| || ||||||||||| | ||||| |||||   |||||| ||||||||||||||    
T  34644580 acaacctctgatgctaggaagccgaaagtgtcaaa-aacaaatggtataaaagcatgtaggttgtcagaacacgctttctcatgtttggccacttt 34644674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 69 - 241
Target Start/End: Original strand, 22346807 - 22346979
Alignment:
Q  69 cctttttgaatagcaaaatcaatcatcgtaaacacaacattcatgaacctaggagaaattacatttctatgcatgaccctttgaactct-tgtaaaaggt 167  Q
    |||||||| || ||||||  |||| |||| |||||||||||||| ||||||||||| || |||||||||||||||||| |||||||||| |||| |||||    
T  22346807 cctttttggatggcaaaactaatcctcgtgaacacaacattcataaacctaggagacatgacatttctatgcatgaccttttgaactctgtgtagaaggt 22346906  T
Q  168 ccacaatctctgatgctaggaaactaaaagtgtcaaagcgcaaattgtttaaaagcatgttgattgtctgaaca 241  Q
    | |||| ||||| | |||||||||  |||||||||||  |||||  || |||| |||||||||||||| |||||    
T  22346907 caacaacctctgctactaggaaaccgaaagtgtcaaa-agcaaaaggtataaacgcatgttgattgtcagaaca 22346979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 60 - 264
Target Start/End: Original strand, 2764382 - 2764587
Alignment:
Q  60 gccgcgaagcctttttgaatagcaaaatcaatcatcgtaaacacaacattcatgaacctaggagaaattacatttctatgcatgaccctttgaactct-t 158  Q
    ||||| || |||||||| || | ||||||||||||||||||||||||||| ||| ||||| |||| || |||||  | ||||| |||||||| ||| | |    
T  2764382 gccgctaaacctttttggatggtaaaatcaatcatcgtaaacacaacatttatggacctaagagacataacattgatttgcataaccctttggactttat 2764481  T
Q  159 gtaaaaggtccacaatctctgatgctaggaaactaaaagtgtcaaagcgcaaattgtttaaaagcatgttgattgtctgaaca-tttttctcgtgtttgg 257  Q
    ||| |||||| |||| ||||||||||||||| || |||||||||||  | |||| |  ||||||||||||||||||| |||||  ||||||| ||||||     
T  2764482 gtagaaggtcaacaacctctgatgctaggaagctgaaagtgtcaaa-agaaaatggcataaaagcatgttgattgtcggaacacgttttctcatgtttga 2764580  T
Q  258 ccacttt 264  Q
    |||||||    
T  2764581 ccacttt 2764587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 69 - 268
Target Start/End: Original strand, 21472915 - 21473115
Alignment:
Q  69 cctttttgaatagcaaaatcaatcatcgtaaacacaacattcatgaacctaggagaaattacatttctatgcatgaccctttgaactct-tgtaaaaggt 167  Q
    |||||||| || |||||| || || || | ||| ||||||||||| |||||||||| || ||||| |||||||||||| |||||||||| |||| |||||    
T  21472915 cctttttggatggcaaaaccagtcctcctgaacgcaacattcatggacctaggagacatgacattgctatgcatgaccttttgaactctatgtagaaggt 21473014  T
Q  168 ccacaatctctgatgctaggaaactaaaagtgtcaaagcgcaaattgtttaaaagcatgttgattgtctgaaca-tttttctcgtgtttggccactttac 266  Q
    | |||  ||||| ||||||||||||  ||||||||||  |||||| || ||||| ||||||||||||| |||||   |||||| |||||||||| |||||    
T  21473015 caacagcctctggtgctaggaaactgcaagtgtcaaa-agcaaatggtataaaaacatgttgattgtcagaacacgctttctcatgtttggccattttac 21473113  T
Q  267 tt 268  Q
    ||    
T  21473114 tt 21473115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 117 - 268
Target Start/End: Complemental strand, 29169940 - 29169788
Alignment:
Q  117 ctaggagaaattacatttctatgcatgaccctttgaactct-tgtaaaaggtccacaatctctgatgctaggaaactaaaagtgtcaaagcgcaaattgt 215  Q
    |||||||| || ||||| || ||||||||| |||||||||| |||| |||||  |||| ||||| |||||||||||  |||||||||||  |||||| ||    
T  29169940 ctaggagacatgacattgctgtgcatgaccttttgaactctatgtagaaggttaacaacctctggtgctaggaaaccgaaagtgtcaaaa-gcaaatggt 29169842  T
Q  216 ttaaaagcatgttgattgtctgaaca-tttttctcgtgtttggccactttactt 268  Q
     ||||||||||||||||||| |||||  ||||||||||||||||||| ||||||    
T  29169841 ataaaagcatgttgattgtcagaacacgttttctcgtgtttggccaccttactt 29169788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 60 - 264
Target Start/End: Complemental strand, 31737526 - 31737322
Alignment:
Q  60 gccgcgaagcctttttgaatagcaaaatcaatcatcgtaaacacaacattcatgaacctaggagaaattacatttctatgcatgaccctttgaactct-t 158  Q
    ||||| ||||||||||| || |||||||||||| |||||||||| | ||||||| | |||||| | || |||||  ||||||||||| |||||||||| |    
T  31737526 gccgccaagcctttttggatggcaaaatcaatcctcgtaaacacta-attcatggatctaggaaacataacattgatatgcatgaccttttgaactctat 31737428  T
Q  159 gtaaaaggtccacaatctctgatgctaggaaactaaaagtgtcaaagcgcaaattgtttaaaagcatgttgattgtctgaacat-ttttctcgtgtttgg 257  Q
    ||| || ||| | |  |||| ||||||| |||   |||||||||||   ||||| || ||||||||||||||||||| ||| || ||||||| |||||||    
T  31737427 gtagaatgtcaatagcctctaatgctagaaaatcgaaagtgtcaaa-aacaaatggtataaaagcatgttgattgtcagaatatgttttctcatgtttgg 31737329  T
Q  258 ccacttt 264  Q
    |||||||    
T  31737328 ccacttt 31737322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 60 - 204
Target Start/End: Original strand, 2898605 - 2898750
Alignment:
Q  60 gccgcgaagcctttttgaatagcaaaatcaatcatcgtaaacacaacattcatgaacctaggagaaattacatttctatgcatgaccctttgaactct-t 158  Q
    ||||| ||||||||||| || |||||||||||| || |||||||||||||||||| | || |||| || | |||  ||||||||| | |||||||||| |    
T  2898605 gccgctaagcctttttggatggcaaaatcaatcctcttaaacacaacattcatgatcgtatgagacatgatattgttatgcatgatcttttgaactctat 2898704  T
Q  159 gtaaaaggtccacaatctctgatgctaggaaactaaaagtgtcaaa 204  Q
    ||| |||||| |||| ||||| |||||||||||  ||||| |||||    
T  2898705 gtagaaggtcaacaacctctggtgctaggaaaccgaaagtatcaaa 2898750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 81 - 204
Target Start/End: Complemental strand, 24177694 - 24177570
Alignment:
Q  81 gcaaaatcaatcatcgtaaacacaacattcatgaacctaggagaaattacatttctatgcatgaccctttgaactct-tgtaaaaggtccacaatctctg 179  Q
    |||||| ||||| |||| ||||||||||||||| |||||||||| || ||||| |||||||||||  |||||||||| |||| |||||  |||  |||||    
T  24177694 gcaaaaccaatcctcgtgaacacaacattcatggacctaggagatatgacattgctatgcatgactttttgaactctatgtagaaggtaaacagcctctg 24177595  T
Q  180 atgctaggaaactaaaagtgtcaaa 204  Q
    ||||||||||||  ||| |||||||    
T  24177594 atgctaggaaaccgaaactgtcaaa 24177570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 94 - 241
Target Start/End: Original strand, 38731546 - 38731693
Alignment:
Q  94 tcgtaaacacaacattcatgaacctaggagaaattacatttctatgcatgaccctttgaactct-tgtaaaaggtccacaatctctgatgctaggaaact 192  Q
    |||||||||||| ||||||| |||||||||  || |||||  | |||||||||||||||||||| |||| |||||  |||| ||||| ||||| ||| |     
T  38731546 tcgtaaacacaatattcatggacctaggagtcatgacattattgtgcatgaccctttgaactctatgtagaaggttaacaacctctggtgctaagaagcc 38731645  T
Q  193 aaaagtgtcaaagcgcaaattgtttaaaagcatgttgattgtctgaaca 241  Q
    |||||| |||||  ||||||||| |||||| |||||||||||| |||||    
T  38731646 aaaagtttcaaa-agcaaattgtataaaagtatgttgattgtcagaaca 38731693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 94 - 268
Target Start/End: Complemental strand, 45659816 - 45659643
Alignment:
Q  94 tcgtaaacacaacattcatgaacctaggagaaattacatttctatgcatgaccctttgaactcttgtaaaaggtccacaatctctgatgctaggaaacta 193  Q
    |||||||||| ||||| ||  |||||||||| || ||||| |||||||||| | ||||||||||  || |||||| |||  ||||| || |||||||       
T  45659816 tcgtaaacacgacatttattgacctaggagacatgacattgctatgcatgatcttttgaactcta-tagaaggtcaacagcctctggtgataggaaatcg 45659718  T
Q  194 aaagtgtcaaagcgcaaattgtttaaaagcatgttgattgtctgaaca-tttttctcgtgtttggccactttactt 268  Q
    |||||||||||  |||||| || ||||||||||||||||||| |||||   |||||||||||||||||| ||||||    
T  45659717 aaagtgtcaaaa-gcaaatggtataaaagcatgttgattgtcagaacacgctttctcgtgtttggccaccttactt 45659643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 69 - 264
Target Start/End: Complemental strand, 28041322 - 28041126
Alignment:
Q  69 cctttttgaatagcaaaatcaatcatcgtaaacacaacattcatgaacctaggagaaattacatttctatgcatgaccctttgaactct-tgtaaaaggt 167  Q
    |||||||| || | |||||||||| || | | ||||||||||||| || |||  || || ||||| |||||||||||| |||||||||| |||| |||||    
T  28041322 cctttttggatggaaaaatcaatcctcatgagcacaacattcatggacttagaggacatgacattgctatgcatgaccttttgaactctatgtagaaggt 28041223  T
Q  168 ccacaatctctgatgctaggaaactaaaagtgtcaaagcgcaaattgtttaaaagcatgttgattgtctgaaca-tttttctcgtgtttggccacttt 264  Q
    | ||   ||||| |||||||||||  |||||||||||  |||||| || ||||| | ||||||||||| |||||   |||||| ||||||||||||||    
T  28041222 caaccgcctctggtgctaggaaaccgaaagtgtcaaa-agcaaatggtataaaaacctgttgattgtcagaacacactttctcatgtttggccacttt 28041126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 97 - 203
Target Start/End: Complemental strand, 20259964 - 20259857
Alignment:
Q  97 taaacacaacattcatgaacctaggagaaattacatttctatgcatgaccctttgaactct-tgtaaaaggtccacaatctctgatgctaggaaactaaa 195  Q
    ||||||||||||| || ||| || |||| || ||||| |||||||||||| |||||||||| |||| |||||| |||| ||||| ||||| |||||  ||    
T  20259964 taaacacaacatttattaacttatgagacatgacattactatgcatgaccttttgaactctatgtagaaggtcaacaacctctggtgctaagaaaccgaa 20259865  T
Q  196 agtgtcaa 203  Q
    ||||||||    
T  20259864 agtgtcaa 20259857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 83 - 235
Target Start/End: Complemental strand, 4862170 - 4862018
Alignment:
Q  83 aaaatcaatcatcgtaaacacaacattcatgaacctaggagaaattacatttctatgcatgaccctttgaactct-tgtaaaaggtccacaatctctgat 181  Q
    |||||||||| |||||| ||||||||||||| | ||| | ||  | |||||  |||||||||||||||||||||| |||| |||||| ||||  | || |    
T  4862170 aaaatcaatcctcgtaatcacaacattcatggatctaagggacgtgacattgttatgcatgaccctttgaactctatgtagaaggtcaacaacttttggt 4862071  T
Q  182 gctaggaaactaaaagtgtcaaagcgcaaattgtttaaaagcatgttgattgtc 235  Q
    | |||||||   |||||||||||  ||||||||| |||||| |||||| |||||    
T  4862070 gttaggaaatcgaaagtgtcaaa-agcaaattgtataaaagtatgttgcttgtc 4862018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 81 - 150
Target Start/End: Complemental strand, 40516057 - 40515989
Alignment:
Q  81 gcaaaatcaatcatcgtaaacacaacattcatgaacctaggagaaattacatttctatgcatgacccttt 150  Q
    ||||||||||| ||||||||||||||||||||||| ||| |||| |||| ||| | ||||||||||||||    
T  40516057 gcaaaatcaataatcgtaaacacaacattcatgaatcta-gagacattatattgccatgcatgacccttt 40515989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 71 - 157
Target Start/End: Complemental strand, 6670298 - 6670212
Alignment:
Q  71 tttttgaatagcaaaatcaatcatcgtaaacacaacattcatgaacctaggagaaattacatttctatgcatgaccctttgaactct 157  Q
    |||||| || ||||||| ||| |||||||| | |||||||||||| |||||||| || |||||   ||||||||| |||||||||||    
T  6670298 tttttggatggcaaaattaattatcgtaaatataacattcatgaatctaggagatatgacattgtaatgcatgactctttgaactct 6670212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 69 - 204
Target Start/End: Original strand, 47459594 - 47459730
Alignment:
Q  69 cctttttgaatagcaaaatcaatcatcgtaaacacaacattcatgaacctaggagaaattacatttctatgcatgaccctttgaactct-tgtaaaaggt 167  Q
    ||||||||||| || ||||||||  |||||||||||||||| ||  || ||||||| || ||||| ||||||||   |||||| ||||| |||| |||||    
T  47459594 cctttttgaatggctaaatcaattctcgtaaacacaacatttatagacttaggagacataacattgctatgcatattcctttggactctatgtagaaggt 47459693  T
Q  168 ccacaatctctgatgctaggaaactaaaagtgtcaaa 204  Q
    | ||   ||||||| ||||||| | |||||| |||||    
T  47459694 caactgcctctgatactaggaagccaaaagtatcaaa 47459730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 69 - 124
Target Start/End: Original strand, 4611101 - 4611156
Alignment:
Q  69 cctttttgaatagcaaaatcaatcatcgtaaacacaacattcatgaacctaggaga 124  Q
    |||||||| ||  |||||||||||||||| ||||||| ||||||| ||||||||||    
T  4611101 cctttttggatgacaaaatcaatcatcgtgaacacaatattcatggacctaggaga 4611156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 94 - 204
Target Start/End: Original strand, 7213187 - 7213298
Alignment:
Q  94 tcgtaaacacaacattcatgaacctaggagaaattacatttctatgcatgaccctttgaactct-tgtaaaaggtccacaatctctgatgctaggaaact 192  Q
    |||| ||||||||||||||| |||||| ||| || |||||  ||||||||||  |||||||| | || | ||| || ||| ||||| ||||||||||||     
T  7213187 tcgtgaacacaacattcatggacctagaagacatgacattattatgcatgacattttgaactttatgcagaagctcaacagtctctaatgctaggaaacc 7213286  T
Q  193 aaaagtgtcaaa 204  Q
     |||||||||||    
T  7213287 gaaagtgtcaaa 7213298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 68 - 123
Target Start/End: Original strand, 30688468 - 30688523
Alignment:
Q  68 gcctttttgaatagcaaaatcaatcatcgtaaacacaacattcatgaacctaggag 123  Q
    ||||||||| ||| ||||| ||||| |||||||||||||||||||| ||| |||||    
T  30688468 gcctttttggataacaaaaccaatcctcgtaaacacaacattcatggacccaggag 30688523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 70 - 112
Target Start/End: Complemental strand, 45835380 - 45835338
Alignment:
Q  70 ctttttgaatagcaaaatcaatcatcgtaaacacaacattcat 112  Q
    ||||||| || |||||||||||| |||||||||||||||||||    
T  45835380 ctttttggatggcaaaatcaatcctcgtaaacacaacattcat 45835338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 70; Significance: 3e-31; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 69 - 264
Target Start/End: Complemental strand, 17249500 - 17249304
Alignment:
Q  69 cctttttgaatagcaaaatcaatcatcgtaaacacaacattcatgaacctaggagaaattacatttctatgcatgaccctttgaactct-tgtaaaaggt 167  Q
    |||||||| || |||||| ||||| ||||||||||||||||||||||| ||||||| || ||||| |||| ||| | |||||| ||||| |||| |||||    
T  17249500 cctttttggatggcaaaaccaatcctcgtaaacacaacattcatgaacttaggagacataacattgctatacataatcctttggactctatgtagaaggt 17249401  T
Q  168 ccacaatctctgatgctaggaaactaaaagtgtcaaagcgcaaattgtttaaaagcatgttgattgtctgaaca-tttttctcgtgtttggccacttt 264  Q
    | ||   ||||||||||||||| | ||||||||||||  |||||| || ||||||||||||||||||| |||||   |||||| ||||||||||||||    
T  17249400 caactgcctctgatgctaggaagccaaaagtgtcaaa-agcaaatggtataaaagcatgttgattgtcagaacacactttctcatgtttggccacttt 17249304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 69 - 158
Target Start/End: Original strand, 32115630 - 32115719
Alignment:
Q  69 cctttttgaatagcaaaatcaatcatcgtaaacacaacattcatgaacctaggagaaattacatttctatgcatgaccctttgaactctt 158  Q
    |||||||  |||||||||||||||||||||||||||||||||||| |||||||||| || |||||  ||||||||||| |||||||||||    
T  32115630 cctttttagatagcaaaatcaatcatcgtaaacacaacattcatggacctaggagacatgacattgttatgcatgaccttttgaactctt 32115719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 82 - 241
Target Start/End: Original strand, 959506 - 959664
Alignment:
Q  82 caaaatcaatcatcgtaaacacaacattcatgaacctaggagaaattacatttctatgcatgaccctttgaactcttgtaaaaggtccacaatctctgat 181  Q
    ||||||||||| |||||||||||||||||||| |||||||||| |  ||||| |||||||||||| ||||||||   ||| |||||| |||| ||||| |    
T  959506 caaaatcaatcctcgtaaacacaacattcatggacctaggagacacaacattgctatgcatgaccttttgaacttacgtagaaggtcaacaacctctggt 959605  T
Q  182 gctaggaaactaaaagtgtcaaagcgcaaattgtttaaaagcatgttgattgtctgaaca 241  Q
    ||||||||||  ||| |||||||   ||||| || ||||  ||||||||||||| |||||    
T  959606 gctaggaaaccgaaaatgtcaaa-aacaaatggtataaagacatgttgattgtcagaaca 959664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 69 - 241
Target Start/End: Original strand, 34304408 - 34304580
Alignment:
Q  69 cctttttgaatagcaaaatcaatcatcgtaaacacaacattcatgaacctaggagaaattacatttctatgcatgaccctttgaactct-tgtaaaaggt 167  Q
    |||||||| || |||||||||||| ||||||| |||||||||||  ||||| |||| || | ||| |||||||| || ||||| ||||| |||| |||||    
T  34304408 cctttttggattgcaaaatcaatcctcgtaaatacaacattcatagacctatgagacatgatattgctatgcataactctttggactctatgtagaaggt 34304507  T
Q  168 ccacaatctctgatgctaggaaactaaaagtgtcaaagcgcaaattgtttaaaagcatgttgattgtctgaaca 241  Q
    | |||   |||||||||||||| |  |||||||||||  |||||| || ||||||||||||||||||| |||||    
T  34304508 caacatcatctgatgctaggaagcccaaagtgtcaaa-agcaaatggtataaaagcatgttgattgtcagaaca 34304580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 66 - 149
Target Start/End: Complemental strand, 3137445 - 3137362
Alignment:
Q  66 aagcctttttgaatagcaaaatcaatcatcgtaaacacaacattcatgaacctaggagaaattacatttctatgcatgaccctt 149  Q
    ||||||||||| || |||||| ||||| |||||||||||||||||||| |||||||||| || ||||| |||||||||||||||    
T  3137445 aagcctttttggatggcaaaaccaatcctcgtaaacacaacattcatggacctaggagacatgacattgctatgcatgaccctt 3137362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 81 - 235
Target Start/End: Complemental strand, 33220894 - 33220740
Alignment:
Q  81 gcaaaatcaatcatcgtaaacacaacattcatgaacctaggagaaattacatttctatgcatgaccctttgaactct-tgtaaaaggtccacaatctctg 179  Q
    |||||| |||| ||||||||| ||||||||||| |||||| ||| |  ||||| |||||||| |||||||| ||| | |||| |||||| |||| ||| |    
T  33220894 gcaaaaccaattatcgtaaacgcaacattcatggacctagaagacacaacattgctatgcataaccctttggactatatgtagaaggtcaacaacctcgg 33220795  T
Q  180 atgctaggaaactaaaagtgtcaaagcgcaaattgtttaaaagcatgttgattgtc 235  Q
    |||||||||| |  |||||||||||  |||||| || |||||||||||||||||||    
T  33220794 atgctaggaagccgaaagtgtcaaa-agcaaatggtataaaagcatgttgattgtc 33220740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 72 - 258
Target Start/End: Complemental strand, 29338271 - 29338084
Alignment:
Q  72 ttttgaatagcaaaatcaatcatcgtaaacacaacattcatgaacctaggagaaattacatttctatgcatgaccctttgaactct-tgtaaaaggtcca 170  Q
    ||||| |||| |||||||||| | |||||||||||||||||| |||||||||  || |||||  | |||||||||||||||||  | |||| |||||| |    
T  29338271 ttttggatagaaaaatcaatccttgtaaacacaacattcatggacctaggagtcatgacattgatgtgcatgaccctttgaaccatatgtagaaggtcaa 29338172  T
Q  171 caatctctgatgctaggaaactaaaagtgtcaaagcgcaaattgtttaaaagcatgttgattgtctgaaca-tttttctcgtgtttggc 258  Q
    | ||||||| |||||||||   | ||||||||||  |||||| || ||| ||||||||||||||  |||||  ||||||| ||||||||    
T  29338171 cgatctctggtgctaggaagtcagaagtgtcaaa-agcaaatggtataagagcatgttgattgttagaacacgttttctcatgtttggc 29338084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 70 - 268
Target Start/End: Original strand, 28625844 - 28626043
Alignment:
Q  70 ctttttgaatagcaaaatcaatcatcgtaaacacaacattcatgaacctaggagaaattacatttctatgcatgaccctttgaactct-tgtaaaaggtc 168  Q
    |||||||||| ||||||||||||  ||||||||||||||||||  ||||| |||| || |||| | ||||||||||| |||||||| | |||| ||| ||    
T  28625844 ctttttgaatggcaaaatcaatctccgtaaacacaacattcatagacctatgagatatgacatgt-tatgcatgaccttttgaactttatgtagaagctc 28625942  T
Q  169 cacaatctctgatgctaggaaactaaaagtgtcaaagcgcaaattgt-ttaaaagcatgttgattgtctgaaca-tttttctcgtgtttggccactttac 266  Q
     |||| ||||| |||||||||| | ||||||| |||   ||||| || | ||||  |||||||||||| |||||  ||||||||||||| ||||| ||||    
T  28625943 aacaacctctggtgctaggaaattgaaagtgt-aaaaaacaaatggtataaaaaaaatgttgattgtcagaacacgttttctcgtgtttagccaccttac 28626041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 72 - 241
Target Start/End: Complemental strand, 4206788 - 4206619
Alignment:
Q  72 ttttgaatagcaaaatcaatcatcgtaaacacaacattcatgaacctaggagaaattacatttctatgcatgaccctttgaactct-tgtaaaaggtcca 170  Q
    ||||| || |||||| ||||| |||||||||| | ||||||  ||||||| || || |||||   |||||||||| |||||||||| |||| |||||| |    
T  4206788 ttttggatggcaaaaccaatcctcgtaaacactatattcattgacctaggtgacatgacattgtcatgcatgaccttttgaactctatgtagaaggtcaa 4206689  T
Q  171 caatctctgatgctaggaaactaaaagtgtcaaagcgcaaattgtttaaaagcatgttgattgtctgaaca 241  Q
    ||| ||||| ||||||||| |  |||||||||||  ||||||  | |||||||||||| |||||| |||||    
T  4206688 caacctctggtgctaggaacccgaaagtgtcaaa-agcaaatgatataaaagcatgttcattgtcagaaca 4206619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 71 - 234
Target Start/End: Original strand, 24016251 - 24016414
Alignment:
Q  71 tttttgaatagcaaaatcaatcatcgtaaacacaacattcatgaacctaggagaaattacatttctatgcatgaccctttgaactct-tgtaaaaggtcc 169  Q
    ||||| |||||||||| |||| |||||||||| || ||| ||| || ||||||| || |||||  | |||||||||||||||||||| |||||||  ||     
T  24016251 ttttttaatagcaaaaccaattatcgtaaacataatatttatgtacttaggagacatgacattcttgtgcatgaccctttgaactctatgtaaaaaatca 24016350  T
Q  170 acaatctctgatgctaggaaactaaaagtgtcaaagcgcaaattgtttaaaagcatgttgattgt 234  Q
    ||||  |||| ||||||||||| |||| | || ||  |||||| || ||||| ||||||||||||    
T  24016351 acaacatctggtgctaggaaaccaaaactatc-aatagcaaatggtataaaaacatgttgattgt 24016414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 72 - 241
Target Start/End: Complemental strand, 4166114 - 4165945
Alignment:
Q  72 ttttgaatagcaaaatcaatcatcgtaaacacaacattcatgaacctaggagaaattacatttctatgcatgaccctttgaactct-tgtaaaaggtcca 170  Q
    ||||| || |||||| ||||| |||||||||| | ||| ||  ||||||| || || |||||   |||||||||| ||| |||||| |||| |||||| |    
T  4166114 ttttggatggcaaaaccaatcctcgtaaacactatatttattgacctaggtgacatgacattgtcatgcatgaccttttaaactctatgtagaaggtcaa 4166015  T
Q  171 caatctctgatgctaggaaactaaaagtgtcaaagcgcaaattgtttaaaagcatgttgattgtctgaaca 241  Q
    ||| ||||| ||||||||| |  |||||||||||  ||||||  | ||||||||||||||||||| |||||    
T  4166014 caacctctggtgctaggaacccgaaagtgtcaaaa-gcaaatgatataaaagcatgttgattgtcagaaca 4165945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 81 - 264
Target Start/End: Complemental strand, 357899 - 357716
Alignment:
Q  81 gcaaaatcaatcatcgtaaacacaacattcatgaacctaggagaaattacatttctatgcatgaccctttgaactct-tgtaaaaggtccacaatctctg 179  Q
    ||||||| |||| |||||||||||||||||||| |||||||||| || ||||| |||||| | | | |||| ||||| |||| ||||||  ||| ||||     
T  357899 gcaaaattaatcttcgtaaacacaacattcatggacctaggagagataacattgctatgcttaatcatttggactctatgtagaaggtcatcaacctcta 357800  T
Q  180 atgctaggaaactaaaagtgtcaaagcgcaaattgtttaaaagcatgttgattgtctgaaca-tttttctcgtgtttggccacttt 264  Q
    ||| |||||||| |||||||| |||   ||||   | |||||||||||| |||||| |||||   |||||| ||||||||||||||    
T  357799 atgttaggaaac-aaaagtgttaaa-aacaaaggttataaaagcatgttcattgtcagaacacgctttctcatgtttggccacttt 357716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 129 - 241
Target Start/End: Complemental strand, 45812 - 45700
Alignment:
Q  129 acatttctatgcatgaccctttgaactct-tgtaaaaggtccacaatctctgatgctaggaaactaaaagtgtcaaagcgcaaattgtttaaaagcatgt 227  Q
    ||||| |||||||||||| |||||||||| |||| |||||| |||  ||||| ||||| |||||  |||||||||||   ||||| |  |||||||||||    
T  45812 acattgctatgcatgaccttttgaactctatgtagaaggtcaacagcctctggtgctaagaaaccgaaagtgtcaaa-aacaaatggaataaaagcatgt 45714  T
Q  228 tgattgtctgaaca 241  Q
    |||||||| |||||    
T  45713 tgattgtcagaaca 45700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0490 (Bit Score: 69; Significance: 1e-30; HSPs: 1)
Name: scaffold0490
Description:

Target: scaffold0490; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 102 - 268
Target Start/End: Original strand, 6279 - 6446
Alignment:
Q  102 acaacattcatgaacctaggagaaattacatttctatgcatgaccctttgaactct-tgtaaaaggtccacaatctctgatgctaggaaactaaaagtgt 200  Q
    |||||||||||| |||||||||| || ||||| |||||||||||| |||||||||| |||| |||||| |||  ||||| |||||||||||| |||||||    
T  6279 acaacattcatggacctaggagacatgacattgctatgcatgaccttttgaactctatgtagaaggtcaacagcctctggtgctaggaaactgaaagtgt 6378  T
Q  201 caaagcgcaaattgtttaaaagcatgttgattgtctgaaca-tttttctcgtgtttggccactttactt 268  Q
    ||||  |||||| || || |||||||||||||||| |||||   |||||| ||||||||||||||||||    
T  6379 caaa-agcaaatggtatagaagcatgttgattgtcagaacacgctttctcatgtttggccactttactt 6446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 61; Significance: 7e-26; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 69 - 260
Target Start/End: Original strand, 103018 - 103209
Alignment:
Q  69 cctttttgaatagcaaaatcaatcatcgtaaacacaacattcatgaacctaggagaaattacatttctatgcatgaccctttgaactc-ttgtaaaaggt 167  Q
    |||||||| || |||||| ||||| |||||||||||||||||||| |||||||||| |  |||||  ||||||||||| ||||| |||  |||| |||||    
T  103018 cctttttggatggcaaaaccaatcctcgtaaacacaacattcatggacctaggagacacgacattgttatgcatgaccttttgagctcgatgtagaaggt 103117  T
Q  168 ccacaatctctgatgctaggaaactaaaagtgtcaaagcgcaaattgtttaaaagcatgttgattgtctgaacatttttctcgtgtttggcca 260  Q
    | |||  ||||| |||||||||||  |||||||||||  |||||| || ||||||||||||||||||| ||     |||||||||||||||||    
T  103118 caacagcctctggtgctaggaaaccgaaagtgtcaaa-agcaaatggtataaaagcatgttgattgtcagacacgctttctcgtgtttggcca 103209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0148 (Bit Score: 58; Significance: 4e-24; HSPs: 1)
Name: scaffold0148
Description:

Target: scaffold0148; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 61 - 241
Target Start/End: Original strand, 33154 - 33334
Alignment:
Q  61 ccgcgaagcctttttgaatagcaaaatcaatcatcgtaaacacaacattcatgaacctaggagaaattacatttctatgcatgaccctttgaactct-tg 159  Q
    |||| ||||||||||| ||  ||||||||||| |||||||||| || |||||| |||||||||| || | ||| |||||||||||| |||||||||| ||    
T  33154 ccgccaagcctttttggatgacaaaatcaatcctcgtaaacacgacgttcatggacctaggagacataaaattgctatgcatgaccttttgaactctatg 33253  T
Q  160 taaaaggtccacaatctctgatgctaggaaactaaaagtgtcaaagcgcaaattgtttaaaagcatgttgattgtctgaaca 241  Q
    || |||||| |||| ||||| || ||||||||  ||| |||||||  | |||| || ||||| ||||||||||||| |||||    
T  33254 tagaaggtcaacaacctctggtgttaggaaaccgaaaatgtcaaa-agtaaatggtataaaaacatgttgattgtcagaaca 33334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0470 (Bit Score: 54; Significance: 1e-21; HSPs: 1)
Name: scaffold0470
Description:

Target: scaffold0470; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 94 - 234
Target Start/End: Original strand, 7540 - 7679
Alignment:
Q  94 tcgtaaacacaacattcatgaacctaggagaaattacatttctatgcatgaccctttgaactct-tgtaaaaggtccacaatctctgatgctaggaaact 192  Q
    ||||||||| |||||||||| ||||| |||| || |||||  ||||||||||| ||||||| || || |||||||| ||||||||||  |||||||||||    
T  7540 tcgtaaacataacattcatggacctatgagacatgacatta-tatgcatgaccttttgaacgctatgcaaaaggtcaacaatctctggagctaggaaact 7638  T
Q  193 aaaagtgtcaaagcgcaaattgtttaaaagcatgttgattgt 234  Q
     |||||||||||  |||||| |||||||| ||||||||||||    
T  7639 gaaagtgtcaaa-agcaaatggtttaaaatcatgttgattgt 7679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1768 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: scaffold1768
Description:

Target: scaffold1768; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 66 - 231
Target Start/End: Complemental strand, 382 - 217
Alignment:
Q  66 aagcctttttgaatagcaaaatcaatcatcgtaaacacaacattcatgaacctaggagaaattacatttctatgcatgaccctttgaactct-tgtaaaa 164  Q
    ||||||||||| || ||||||  |||| ||||||||||||| |||||  | |||||||| || ||||| ||||| |||||  |||||||| | || | ||    
T  382 aagcctttttggatggcaaaactaatcctcgtaaacacaacgttcatcgatctaggagacatgacattgctatgtatgactttttgaactttatgcagaa 283  T
Q  165 ggtccacaatctctgatgctaggaaactaaaagtgtcaaagcgcaaattgtttaaaagcatgttgat 231  Q
    |||| |||| || || | |||| |||| |||||||||||| | ||||| || |||||||||||||||    
T  282 ggtcaacaacctttggtactagaaaaccaaaagtgtcaaa-cacaaatggtataaaagcatgttgat 217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0361 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: scaffold0361
Description:

Target: scaffold0361; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 73 - 153
Target Start/End: Complemental strand, 17468 - 17390
Alignment:
Q  73 tttgaatagcaaaatcaatcatcgtaaacacaacattcatgaacctaggagaaattacatttctatgcatgaccctttgaa 153  Q
    |||| ||||||||| |||||||| ||||||||||||||||| ||||| |||| |  |||||  ||||||||||| ||||||    
T  17468 tttggatagcaaaagcaatcatcttaaacacaacattcatggacctaagagaca--acattattatgcatgaccatttgaa 17390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0186 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: scaffold0186
Description:

Target: scaffold0186; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 136 - 233
Target Start/End: Original strand, 10340 - 10436
Alignment:
Q  136 tatgcatgaccctttgaactcttgtaaaaggtccacaatctctgatgctaggaaactaaaagtgtcaaagcgcaaattgtttaaaagcatgttgattg 233  Q
    |||||||| |||||| ||||||  || |||||| |||| ||||| ||||||||| | | ||||||||||  |||||| || |||||||||||||||||    
T  10340 tatgcatggccctttcaactctattagaaggtcaacaacctctggtgctaggaagccacaagtgtcaaaa-gcaaatggtataaaagcatgttgattg 10436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0493 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0493
Description:

Target: scaffold0493; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 136 - 254
Target Start/End: Complemental strand, 8644 - 8525
Alignment:
Q  136 tatgcatgaccctttgaactctt-gtaaaaggtccacaatctctgatgctaggaaactaaaagtgtcaaagcgcaaattgtttaaaagcatgttgattgt 234  Q
    |||||||||  |||||||||||| | | ||| | ||||| ||||  ||||||||||| |||||||| ||| ||||||| || ||||| ||||||||||||    
T  8644 tatgcatgagtctttgaactctttgcagaagattcacaacctctagtgctaggaaaccaaaagtgttaaa-cgcaaatggtataaaaacatgttgattgt 8546  T
Q  235 ctgaacat-ttttctcgtgtt 254  Q
    | |||||| ||||||| ||||    
T  8545 cagaacatgttttctcatgtt 8525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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