View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8804_low_17 (Length: 219)
Name: NF8804_low_17
Description: NF8804
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8804_low_17 |
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Alignment Details
Target: chr5 (Bit Score: 173; Significance: 3e-93; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 173; E-Value: 3e-93
Query Start/End: Original strand, 12 - 199
Target Start/End: Complemental strand, 4749248 - 4749058
Alignment:
| Q |
12 |
agatgaataaatgagtatataatt---taccttgagtgctttatagaatggaaagccaggaagattgatcgattgggacctcattcctcgaagcaaatca |
108 |
Q |
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| T |
4749248 |
agatgaataaatgagtatataattaattaccttgagtgctttatagaatggaaagccaggaagattgatcgattgggacctcattcctcgaagcaaatca |
4749149 |
T |
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| Q |
109 |
atgtacaaatgctcaaccaaagcaaggtcagcatgttcacgatcagaggaaaagaaaacagaagtgatgacatcaaaagtgaactttttgg |
199 |
Q |
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| T |
4749148 |
atgtacaaatgctcaaccaaagcaaggtcagcatgttcacgatcagaggaaaagaagacagaagtgatgacatcaaaagtgaactttttgg |
4749058 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 37 - 187
Target Start/End: Complemental strand, 4757058 - 4756908
Alignment:
| Q |
37 |
accttgagtgctttatagaatggaaagccaggaagattgatcgattgggacctcattcctcgaagcaaatcaatgtacaaatgctcaaccaaagcaaggt |
136 |
Q |
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| T |
4757058 |
accttgagtgctttatggaatgcaaatccagtgagattgatggcgagtgatttcattcccttaagcaaatcaatgtacaaattttcaaccaaaccaaggt |
4756959 |
T |
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| Q |
137 |
cagcatgttcacgatcagaggaaaagaaaacagaagtgatgacatcaaaag |
187 |
Q |
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| T |
4756958 |
ccacgtgatcacgatcagaagaaatgaagatggtagtgatgacttcaaaag |
4756908 |
T |
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