View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8804_low_18 (Length: 210)
Name: NF8804_low_18
Description: NF8804
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8804_low_18 |
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Alignment Details
Target: chr1 (Bit Score: 174; Significance: 8e-94; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 174; E-Value: 8e-94
Query Start/End: Original strand, 12 - 193
Target Start/End: Original strand, 6349883 - 6350064
Alignment:
| Q |
12 |
gataatactacttctcttcattttggcctttcccttaatggctcctattaaactgtctctcagtcaagtaatctctggtaaccttaatatcatcaacata |
111 |
Q |
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| T |
6349883 |
gataatactacttctcttcattttggcctttcccttaatggctcctattaaactgtctctcagtcaagtaatctctggtaaccttaatatcatcaacata |
6349982 |
T |
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| Q |
112 |
aacaagaactacaattagttttcctccttgtgaatgtttgaactaaagattttgatttccttgacttttcttatagcccaag |
193 |
Q |
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| T |
6349983 |
aacaagaactacaattagttttcctccgtgtgaatgtttgaactatagattttgatttccttgacttttcttatagcccaag |
6350064 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 26 - 190
Target Start/End: Original strand, 6391666 - 6391824
Alignment:
| Q |
26 |
tcttcattttggcctttcccttaatggctcctattaaactgtctctcagtcaagtaatctctggtaaccttaatatcatcaacataaacaagaactacaa |
125 |
Q |
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| T |
6391666 |
tcttgattttggcttttcccttaatgggtccttttatacc--ctcacagtcaagtaatctcatgtaagcataatatcatcaacataaacaaaaaatacaa |
6391763 |
T |
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| Q |
126 |
ttagttttcctccttgtgaatgtttgaactaaagattttgatttccttgacttttcttatagccc |
190 |
Q |
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| T |
6391764 |
ttagttttcctccttctgaatattt----tgaagattgtgattttcttgactttgctcatagccc |
6391824 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 25 - 175
Target Start/End: Original strand, 6400023 - 6400169
Alignment:
| Q |
25 |
ctcttcattttggcctttcccttaatggctcctattaaactgtctctcagtcaagtaatctctggtaaccttaatatcatcaacataaacaagaactaca |
124 |
Q |
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| T |
6400023 |
ctctttattttggcatttcccttaatgtgtcctattagagtctctctcagtcaagtaatctcctgtgaccataatat-ttcaacataaacaag---taca |
6400118 |
T |
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| Q |
125 |
attagttttcctccttgtgaatgtttgaactaaagattttgatttccttga |
175 |
Q |
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| T |
6400119 |
attagttttcatccttgtgaatgttggaagaaaggattgtgatttccttga |
6400169 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 96 - 189
Target Start/End: Original strand, 6382597 - 6382690
Alignment:
| Q |
96 |
taatatcatcaacataaacaagaactacaattagttttcctccttgtgaatgtttgaactaaagattttgatttccttgacttttcttatagcc |
189 |
Q |
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| T |
6382597 |
taatatcatttacatacacaaaaaatacaattagttttcctccttgtgaatgcttgaagaaaagattgtgatttccttgactttgcttatagcc |
6382690 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 32 - 140
Target Start/End: Original strand, 6404738 - 6404842
Alignment:
| Q |
32 |
ttttggcctttcccttaatggctcctattaaactgtctctcagtcaagtaatctctggtaaccttaatatcatcaacataaacaagaactacaattagtt |
131 |
Q |
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| T |
6404738 |
ttttggcctttcccttaatgtgtcctattatactctctag-agtgaagtaatctcttgtaaccataacatcttcaacataaacaag---tacatttattt |
6404833 |
T |
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| Q |
132 |
ttcctcctt |
140 |
Q |
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| T |
6404834 |
ttcctcctt |
6404842 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 96 - 153
Target Start/End: Complemental strand, 27471065 - 27471008
Alignment:
| Q |
96 |
taatatcatcaacataaacaagaactacaattagttttcctccttgtgaatgtttgaa |
153 |
Q |
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| T |
27471065 |
taatatcatcaacataaacaataagtacaatcagtttttccccttgtgaatctttgaa |
27471008 |
T |
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