View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8804_low_19 (Length: 203)
Name: NF8804_low_19
Description: NF8804
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8804_low_19 |
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| [»] chr4 (1 HSPs) |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 143; Significance: 3e-75; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 1 - 203
Target Start/End: Complemental strand, 45201197 - 45200995
Alignment:
| Q |
1 |
aaaagaactgccctggttgctgacatgaagagaaggaaactaggtgaagagtagccaagtgtttcaacaaagctaaaggccaaaaacataagacagaaag |
100 |
Q |
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| T |
45201197 |
aaaagaattgccccggtcgctgacatgaagaggaggaaactaggtgaagagtagccaagtgtttcaacaaagctgaaagccaaaaacataatacaaaaag |
45201098 |
T |
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| Q |
101 |
aagttgcattcgctgagataatcaagaaacagttgcagatataggtgtgaaagagttgcttgtaaagtgctattatcaaagagaacgaaggtggcaaaga |
200 |
Q |
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| T |
45201097 |
aagttgcatttgctgagataattaagaaacagttgcagatataggtatgaaagagtggcttgtaaagtgctattatcgaagagaatgaaggcggcaaaga |
45200998 |
T |
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| Q |
201 |
tgg |
203 |
Q |
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||| |
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| T |
45200997 |
tgg |
45200995 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 119; Significance: 5e-61; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 119; E-Value: 5e-61
Query Start/End: Original strand, 1 - 203
Target Start/End: Original strand, 7772908 - 7773109
Alignment:
| Q |
1 |
aaaagaactgccctggttgctgacatgaagagaaggaaactaggtgaagagtagccaagtgtttcaacaaagctaaaggccaaaaacataagacagaaag |
100 |
Q |
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|||||||||||||||||||||||||||||||| ||||| |||||||||||||||| |||||||||||||||| | ||||||||||||| | ||| |||| |
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| T |
7772908 |
aaaagaactgccctggttgctgacatgaagaggaggaacctaggtgaagagtagc-aagtgtttcaacaaagttgaaggccaaaaacaccatacaaaaag |
7773006 |
T |
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| Q |
101 |
aagttgcattcgctgagataatcaagaaacagttgcagatataggtgtgaaagagttgcttgtaaagtgctattatcaaagagaacgaaggtggcaaaga |
200 |
Q |
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| T |
7773007 |
aagttgaattcgctgagataatccatttacagatgcagatataggtatgaaagagtggcttgtaaagtgcttttatcaaagagaatgaaggtgacaaaga |
7773106 |
T |
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| Q |
201 |
tgg |
203 |
Q |
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||| |
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| T |
7773107 |
tgg |
7773109 |
T |
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