View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8804_low_2 (Length: 586)
Name: NF8804_low_2
Description: NF8804
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8804_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 301; Significance: 1e-169; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 20 - 354
Target Start/End: Complemental strand, 2101384 - 2101051
Alignment:
| Q |
20 |
ttttaacgagaaatgttatgttacgacttgttggttttccaacgccgaatatatacggtgtataactatttcacttaggtgtgtttcatatacaggtaga |
119 |
Q |
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| T |
2101384 |
ttttaacgagaaatgttatgttaagacttgttggttttccaacgccgaatatatacgctgtataactatttcacttaggtgtgtttcatatacaggtaga |
2101285 |
T |
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| Q |
120 |
gttggcataagaaaatacaatacaacatatgaagttttcgttattcgacac-aaaataaagtttcattaattaatgataaaatacaactcaagtctcaaa |
218 |
Q |
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| T |
2101284 |
gttggcataagaaaatacaatacaacatatgaagttttcgttatttgacacaaaaataatgtttcattaattaatgataaaatacaactcaagtctcaaa |
2101185 |
T |
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| Q |
219 |
aatttcacaacacctcaaatataaaagacaacaaaaaccttgacagaatttctgatctacttcttttcaggcatggtgataatggtgtaacattgctatt |
318 |
Q |
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| T |
2101184 |
aatttcacaacacctcaaatataaaagacaacaaaaaccttgacagaatttctgatctacttc--ttcaggcatggtgataatggtgtaacattgctatt |
2101087 |
T |
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| Q |
319 |
aattatgacgaatccattaacataggtgtttctaat |
354 |
Q |
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| T |
2101086 |
aattatgacgaatccattaacataggtgtttctaat |
2101051 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 320 - 579
Target Start/End: Complemental strand, 2100997 - 2100737
Alignment:
| Q |
320 |
attatgacgaatccattaacataggtgtttctaatcatatccaaagtataacgtgatttacaatattcgttatttgatgtagatatgggtttgtagtata |
419 |
Q |
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| T |
2100997 |
attaagacgagtccattaacataggtgtttctaatcat--ccaaattataacgtgatttacaatattcgttatttgatgtagatatgggtttgtagtata |
2100900 |
T |
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| Q |
420 |
ttgcacattttgcattaggtcaatcaacctagtactagtagatggttttgcaagattttatttacctat---aggatgtcctccctatctccgtaacttg |
516 |
Q |
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| T |
2100899 |
ttgcacattttgcattaggtcaatcaacctagtactagtagatggttttgcaagattttatttacctataggaggatgtcctccctgtctctgtaacttg |
2100800 |
T |
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| Q |
517 |
ttttgcaaactctacttggatctgctccttagaggtttctaagttgttttctgtctctgcttc |
579 |
Q |
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| T |
2100799 |
ttttgcaaactctacttggatctgctccttagaggtttctaagttgttttctgtctttgcttc |
2100737 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 103 - 258
Target Start/End: Complemental strand, 2093476 - 2093320
Alignment:
| Q |
103 |
tttcatatacaggtagagttggcataagaaaatacaatacaacatatgaagttttcgttattcgacacaaaa-taaagtttcattaattaatgataaaat |
201 |
Q |
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| T |
2093476 |
tttcatatacagatagagtaagcgtaagaaaatacaagacaacagatgaagttttggttatttgacacaaaaataaagtttcattaattaatgataaaat |
2093377 |
T |
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| Q |
202 |
acaactcaagtctcaaaaatttcacaacacctcaaatataaaagacaacaaaaacct |
258 |
Q |
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| T |
2093376 |
acaactcaagtctcaaaaatttcacaacacctcaaatataaaagacaacaaaaacct |
2093320 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 103 - 280
Target Start/End: Complemental strand, 43719534 - 43719354
Alignment:
| Q |
103 |
tttcatatacaggtagagttggcataagaaaatacaatacaacatatgaagttttcgttattcgacacaaaataaagt-ttcattaattaatgataaaat |
201 |
Q |
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| T |
43719534 |
tttcatatacagattgagtaggcgtaagaaaatacaagacaacagatgaagttctggttatttgacgcagaaaaaaatgttgattaattaatgatagaat |
43719435 |
T |
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| Q |
202 |
acaactcaagtctcaaaaatttcacaacacctcaaat--ataaaagacaacaaaaaccttgacagaatttctgatctactt |
280 |
Q |
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| T |
43719434 |
acaactcaagtctcaaaaatgttacaacacttcaaataaagaaaagacaacaaaaactctgccagtatttctaatctactt |
43719354 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 508 - 579
Target Start/End: Complemental strand, 2108043 - 2107972
Alignment:
| Q |
508 |
cgtaacttgttttgcaaactctacttggatctgc-tccttagaggtttctaagttgttttctgtctctgcttc |
579 |
Q |
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| T |
2108043 |
cgtaacttgttttgcaaactctacttgggtctgcttccttagaggtttc-aggttgttttctgtttttgcttc |
2107972 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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