View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8804_low_4 (Length: 371)

Name: NF8804_low_4
Description: NF8804
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8804_low_4
NF8804_low_4
[»] chr4 (4 HSPs)
chr4 (17-255)||(52412103-52412346)
chr4 (17-244)||(40393180-40393408)
chr4 (256-354)||(45200920-45201018)
chr4 (111-215)||(40380980-40381084)
[»] chr3 (2 HSPs)
chr3 (17-255)||(7773485-7773727)
chr3 (256-354)||(7773086-7773181)
[»] chr7 (2 HSPs)
chr7 (29-145)||(14676938-14677054)
chr7 (137-263)||(14684711-14684836)
[»] chr5 (3 HSPs)
chr5 (57-145)||(17667323-17667411)
chr5 (137-263)||(17663285-17663410)
chr5 (137-215)||(20229126-20229203)


Alignment Details
Target: chr4 (Bit Score: 152; Significance: 2e-80; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 17 - 255
Target Start/End: Original strand, 52412103 - 52412346
Alignment:
Q  17 aaaatttgcagtcaagaataagagtgaattgtatagcagaagaacttttttattctcattgcgtacaatattggatagtacaattgatttgatgataata 116  Q
    ||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||| | || ||||||||| | |||||||||||||||| |||||    
T  52412103 aaaatttgcagtcaagaataagaatgaattgtatagcagaataacttttttattctcatttcatataatattggacaatacaattgatttgatgctaata 52412202  T
Q  117 caaaactagctctaactgaaaattacaataagaacattcaaactacgccatttagaaataacaacaatgagtaatccctgtagttgctaa-----gcatc 211  Q
    |||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||      |||     
T  52412203 caaaactaactctaactgaaaattacaatgagaacattcaaactacgccatttagaaataaaaacaatgagtaatccctgtaattgctaaagatctcatt 52412302  T
Q  212 tcattcttcttggcataaattacttcctcttccgctatcacatc 255  Q
    ||||||||||||  ||||||| |||||||||||| |||||||||    
T  52412303 tcattcttcttgctataaatttcttcctcttccgatatcacatc 52412346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 17 - 244
Target Start/End: Complemental strand, 40393408 - 40393180
Alignment:
Q  17 aaaatttgcagtcaagaataagagtgaattgtatagcagaagaacttttttattctcattgcgtacaatattggatagtacaattgatttgatgataata 116  Q
    |||||||||||||||| |||||| || |||||||| || ||||||||| |||||| |||||| || || ||||||||| |||||||||||||||||||||    
T  40393408 aaaatttgcagtcaaggataagaatggattgtatatcaaaagaactttgttattcccattgcatataacattggataggacaattgatttgatgataata 40393309  T
Q  117 caaaactagctctaactgaaaattacaataagaacattcaaactacgccatttagaaataacaacaatgagtaatccctgtagttgctaagcatctca-- 214  Q
    |||||||| |  |||| |||||||||||| ||| |||||||||||| | |||||||||||   |||||||| || |||| ||| ||||||||||||||      
T  40393308 caaaactaaccttaacagaaaattacaatgagaccattcaaactacacaatttagaaata---acaatgagcaacccctatagctgctaagcatctcata 40393212  T
Q  215 --ttcttcttggcataaattacttcctcttcc 244  Q
      ||||||||| || ||||| |||||||||||    
T  40393211 tgttcttcttgccagaaatttcttcctcttcc 40393180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 256 - 354
Target Start/End: Original strand, 45200920 - 45201018
Alignment:
Q  256 cttcctttcacactcactgtccttctcattgcaaaagcatccataattcaagctcttaaactcaatcacaataaaccatctttgccaccttcgttctct 354  Q
    |||||||||||||| ||||||||||| ||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| ||||| ||||||    
T  45200920 cttcctttcacactaactgtccttctgattgcaaaagcatccataattcatgcacttaaactcaatcacaataaaccatctttgccgccttcattctct 45201018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 111 - 215
Target Start/End: Complemental strand, 40381084 - 40380980
Alignment:
Q  111 ataatacaaaactagctctaactgaaaattacaataagaacattcaaactacgccatttagaaataacaacaatgagtaatccctgtagttgctaagcat 210  Q
    ||||||||||| || |  ||||||||||||||||| ||| | ||||||| ||  |||||| |||||||||||||||| || ||||  || ||||||||||    
T  40381084 ataatacaaaagtaaccttaactgaaaattacaatgagatcgttcaaaccacctcatttaaaaataacaacaatgagcaacccctacagctgctaagcat 40380985  T
Q  211 ctcat 215  Q
    |||||    
T  40380984 ctcat 40380980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 138; Significance: 5e-72; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 17 - 255
Target Start/End: Complemental strand, 7773727 - 7773485
Alignment:
Q  17 aaaatttgcagtcaagaataagagtgaattgtatagcagaagaac----ttttttattctcattgcgtacaatattggatagtacaattgatttgatgat 112  Q
    ||||||||||||||||||||||| |||||||||||| |||||||     |||||||||| |||| | || ||||||| |||||||| || ||||||||||    
T  7773727 aaaatttgcagtcaagaataagaatgaattgtatagtagaagaagaaatttttttattcccatttcatataatattgcatagtacatttaatttgatgat 7773628  T
Q  113 aatacaaaactagctctaactgaaaattacaataagaacattcaaactacgccatttagaaataacaacaatgagtaatccctgtagttgctaagcatct 212  Q
    | |||||||||| |||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||  ||||||||||||||||||    
T  7773627 actacaaaactaactctaattgaaaattacaatgagaacattcaaactacgccatttagaaataacaacaatgagtgatcattgtagttgctaagcatct 7773528  T
Q  213 cattcttcttggcataaattacttcctcttccgctatcacatc 255  Q
     |||||| || || |||||| ||||||||||||||||||||||    
T  7773527 aattctttttcgcgtaaatttcttcctcttccgctatcacatc 7773485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 256 - 354
Target Start/End: Complemental strand, 7773181 - 7773086
Alignment:
Q  256 cttcctttcacactcactgtccttctcattgcaaaagcatccataattcaagctcttaaactcaatcacaataaaccatctttgccaccttcgttctct 354  Q
    |||||||||||||||| |||| |   |||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||| ||||||| ||||||    
T  7773181 cttcctttcacactcaatgtctt---cattgcaaaagcatccataattcaagcttttaaactaaatcacaataaaccatctttgtcaccttcattctct 7773086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 73; Significance: 3e-33; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 29 - 145
Target Start/End: Original strand, 14676938 - 14677054
Alignment:
Q  29 caagaataagagtgaattgtatagcagaagaacttttttattctcattgcgtacaatattggatagtacaattgatttgatgataatacaaaactagctc 128  Q
    |||||||||| ||| | |||||| ||  |||||||| |||||| |||||| || ||||||||||||||||||||||||| ||||||||||||||||||||    
T  14676938 caagaataagtgtggactgtatatcaagagaactttattattcccattgcatataatattggatagtacaattgatttgttgataatacaaaactagctc 14677037  T
Q  129 taactgaaaattacaat 145  Q
    |||||||||||||||||    
T  14677038 taactgaaaattacaat 14677054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 137 - 263
Target Start/End: Original strand, 14684711 - 14684836
Alignment:
Q  137 aattacaataagaacattcaaactacgccatttagaaataacaacaatgagtaatccctgtagttgctaagcatctcat-tcttcttggcataaattact 235  Q
    ||||||||| |||||||||||| ||| | ||||||||| ||||| |||||| || |||| || |||||||||||||||| | ||||| ||| ||||| ||    
T  14684711 aattacaattagaacattcaaattacac-atttagaaacaacaaaaatgagcaacccctataattgctaagcatctcatatgttctt-gcagaaatttct 14684808  T
Q  236 tcctcttccgctatcacatccttccttt 263  Q
    | ||||||  ||||||||| ||| ||||    
T  14684809 tactcttcaactatcacatgctttcttt 14684836  T

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Target: chr5 (Bit Score: 61; Significance: 4e-26; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 57 - 145
Target Start/End: Complemental strand, 17667411 - 17667323
Alignment:
Q  57 agaacttttttattctcattgcgtacaatattggatagtacaattgatttgatgataatacaaaactagctctaactgaaaattacaat 145  Q
    |||||||| |||||| |||||| || |||||||||||||| |||||||||| ||||| |||||||||||||||||||||||||||||||    
T  17667411 agaactttattattcccattgcatataatattggatagtataattgatttgttgatattacaaaactagctctaactgaaaattacaat 17667323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 137 - 263
Target Start/End: Complemental strand, 17663410 - 17663285
Alignment:
Q  137 aattacaataagaacattcaaactacgccatttagaaataacaacaatgagtaatccctgtagttgctaagcatctcat-tcttcttggcataaattact 235  Q
    ||||||||| |||||||||||| ||| | ||||||||| ||||| |||||| || |||| || |||||||||||||||| | ||||| ||| ||||| ||    
T  17663410 aattacaattagaacattcaaattacac-atttagaaacaacaaaaatgagcaacccctataattgctaagcatctcatatgttctt-gcagaaatttct 17663313  T
Q  236 tcctcttccgctatcacatccttccttt 263  Q
    | ||||||  ||||||||| ||| ||||    
T  17663312 tactcttctactatcacatgctttcttt 17663285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 137 - 215
Target Start/End: Original strand, 20229126 - 20229203
Alignment:
Q  137 aattacaataagaacattcaaactacgccatttagaaataacaacaatgagtaatccctgtagttgctaagcatctcat 215  Q
    ||||||||| ||||||||||||||||  ||||||||||||||||   | || || |||| |||||||||||||||||||    
T  20229126 aattacaattagaacattcaaactac-acatttagaaataacaattgtaagcaacccctatagttgctaagcatctcat 20229203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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