View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8804_low_5 (Length: 365)

Name: NF8804_low_5
Description: NF8804
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8804_low_5
NF8804_low_5
[»] chr8 (2 HSPs)
chr8 (19-315)||(42202325-42202621)
chr8 (202-264)||(25968049-25968111)
[»] chr5 (5 HSPs)
chr5 (26-315)||(3678406-3678695)
chr5 (175-285)||(42629199-42629309)
chr5 (175-315)||(2756473-2756612)
chr5 (175-235)||(3761247-3761307)
chr5 (314-358)||(22020862-22020907)
[»] chr4 (5 HSPs)
chr4 (34-315)||(55328802-55329082)
chr4 (199-315)||(18847870-18847986)
chr4 (165-315)||(42111180-42111330)
chr4 (214-315)||(55353392-55353493)
chr4 (314-364)||(28635727-28635778)
[»] chr7 (4 HSPs)
chr7 (39-296)||(6231863-6232120)
chr7 (193-311)||(48887990-48888108)
chr7 (181-235)||(19883600-19883654)
chr7 (314-357)||(48771969-48772013)
[»] chr6 (1 HSPs)
chr6 (39-296)||(380856-381113)
[»] chr2 (2 HSPs)
chr2 (22-315)||(38970687-38970980)
chr2 (175-275)||(9017619-9017719)
[»] scaffold0691 (1 HSPs)
scaffold0691 (202-315)||(997-1110)


Alignment Details
Target: chr8 (Bit Score: 241; Significance: 1e-133; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 19 - 315
Target Start/End: Original strand, 42202325 - 42202621
Alignment:
Q  19 accaaagacaatcttttgactaggcgtatactagcaccggtgtccttggggaggtgtgagttttgtgaacaagaggcggaaacggtaaatcatctttttc 118  Q
    ||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||| |||||||| |||  |||||| |||||| |||||||    
T  42202325 accaaagacaatcttttgagtaggtgtatactagcaccggtgtccttggggaggtgtgagttttttgaacaagcggcttaaacggcaaatcacctttttc 42202424  T
Q  119 tccattgtgtctggacatttaatgtttggtcgaaggttggtaggtagttgggaataaatttcattacaccgcaatctctttttcaacagtttgaatgttg 218  Q
    ||||||||| |||||| |||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  42202425 tccattgtgactggacttttaatgtatggtcgaaggttggtaggtggttgggaataaatttcattacaccgcaatctctttttcaacattttgaatgttg 42202524  T
Q  219 gaatggggaaattgggaggaggaaacttcgtaaaggttattggttgatatggcatgcggttttatggtcgatttggaaggcccggaatgataggatt 315  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  42202525 gaatggggaaattgggaggaggaaacttcgtaaaggttattggttgatatggcatgcggttttatggtcgatttggaaagcccggaatgataggatt 42202621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 202 - 264
Target Start/End: Complemental strand, 25968111 - 25968049
Alignment:
Q  202 caacagtttgaatgttggaatggggaaattgggaggaggaaacttcgtaaaggttattggttg 264  Q
    ||||| ||||||||||||| ||| || ||||||| || || ||||||||||||||||||||||    
T  25968111 caacactttgaatgttggagtggagagattgggaagaagagacttcgtaaaggttattggttg 25968049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 134; Significance: 1e-69; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 26 - 315
Target Start/End: Complemental strand, 3678695 - 3678406
Alignment:
Q  26 acaatcttttgactaggcgtatactagcaccggtgtccttggggaggtgtgagttttgtgaacaagaggcggaaacggtaaatcatctttttctccattg 125  Q
    |||| ||||||| ||||||||| ||  ||||||||||||| ||||||||||| |||||||| |||| ||||||||||| || |||||| || ||||||||    
T  3678695 acaaccttttgagtaggcgtatccttccaccggtgtccttagggaggtgtgatttttgtgatcaagcggcggaaacggcaactcatctcttcctccattg 3678596  T
Q  126 tgtctggacatttaatgtttggtcgaaggttggtaggtagttgggaataaatttcattacaccgcaatctctttttcaacagtttgaatgttggaatggg 225  Q
    || |||| | ||||| || ||||||||||| ||| ||| |||||| || ||| |||||||||| |||||| | |||||||| ||||| ||||||||||||    
T  3678595 tgactgggcttttaaagtgtggtcgaaggtcggtgggtggttggggattaatctcattacacctcaatctatgtttcaacattttgagtgttggaatggg 3678496  T
Q  226 gaaattgggaggaggaaacttcgtaaaggttattggttgatatggcatgcggttttatggtcgatttggaaggcccggaatgataggatt 315  Q
    || || |||||||| |||||||| |||||| |||||||||| |||||||||||  ||||| ||||||||||||| |||||||||||||||    
T  3678495 gagatcgggaggagtaaacttcggaaaggtcattggttgatttggcatgcggtggtatggacgatttggaaggcgcggaatgataggatt 3678406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 175 - 285
Target Start/End: Complemental strand, 42629309 - 42629199
Alignment:
Q  175 aatttcattacaccgcaatctctttttcaacagtttgaatgttggaatggggaaattgggaggaggaaacttcgtaaaggttattggttgatatggcatg 274  Q
    ||||| |||||||| | |||||| |||||||| ||||||||||||| |||||| |  |||| ||  || ||| ||||||| |||||| |||| |||||||    
T  42629309 aattttattacacctcgatctctgtttcaacattttgaatgttggagtggggagaccgggaagaaaaagctttgtaaaggatattggatgatttggcatg 42629210  T
Q  275 cggttttatgg 285  Q
    |||| ||||||    
T  42629209 cggtattatgg 42629199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 175 - 315
Target Start/End: Complemental strand, 2756612 - 2756473
Alignment:
Q  175 aatttcattacaccgcaatctctttttcaacagtttgaatgttggaatggggaaattgggaggaggaaacttcgtaaaggttattggttgatatggcatg 274  Q
    ||||| |||||||| ||||||| ||| ||||| ||||||||||||| |||||| ||||||| ||  |||||| |||||||  ||||| || | ||||||     
T  2756612 aattttattacacctcaatctcgttt-caacattttgaatgttggagtggggagattgggaagaaaaaactttgtaaaggaaattggatggtttggcatt 2756514  T
Q  275 cggttttatggtcgatttggaaggcccggaatgataggatt 315  Q
    |  | |||||| |||||||||| ||  | ||||||||||||    
T  2756513 caatcttatggacgatttggaaagcgagaaatgataggatt 2756473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 175 - 235
Target Start/End: Complemental strand, 3761307 - 3761247
Alignment:
Q  175 aatttcattacaccgcaatctctttttcaacagtttgaatgttggaatggggaaattggga 235  Q
    ||||| |||||||| |||||| | |||||||| ||||||||||||| |||||| |||||||    
T  3761307 aattttattacacctcaatctttgtttcaacattttgaatgttggagtggggagattggga 3761247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 314 - 358
Target Start/End: Complemental strand, 22020907 - 22020862
Alignment:
Q  314 ttgggatctgggagtg-gctcctccttgaggtcttagattcgattc 358  Q
    |||||||||||||||| |||||||||||| |||| |||||||||||    
T  22020907 ttgggatctgggagtgtgctcctccttgaagtctcagattcgattc 22020862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 110; Significance: 2e-55; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 34 - 315
Target Start/End: Original strand, 55328802 - 55329082
Alignment:
Q  34 ttgactaggcgtatactagcaccggtgtccttggggaggtgtgagttttgtgaacaagaggcggaaacggtaaatcatctttttctccattgtgtctgga 133  Q
    |||| ||||||||| |||||||||||| |||| || ||||||||||||||||| ||   ||| |||||||  | |||||||||||||||||| |  ||||    
T  55328802 ttgagtaggcgtatcctagcaccggtg-ccttaggaaggtgtgagttttgtgatcatatggctgaaacggcgactcatctttttctccattgcgagtgga 55328900  T
Q  134 catttaatgtttggtcgaaggttggtaggtagttgggaataaatttcattacaccgcaatctctttttcaacagtttgaatgttggaatggggaaattgg 233  Q
    | ||||| |||||||||||||||||| | | ||| || || |||||||||||||| ||||||||||||||||| ||||| |||||||||||||| || ||    
T  55328901 cttttaaagtttggtcgaaggttggtggttggttagggattaatttcattacacctcaatctctttttcaacattttgagtgttggaatggggagatagg 55329000  T
Q  234 gaggaggaaacttcgtaaaggttattggttgatatggcatgcggttttatggtcgatttggaaggcccggaatgataggatt 315  Q
    |||| | ||| |||  ||||| ||||||||||| ||||| ||||| |||||| |||||||||| ||  ||||||||||||||    
T  55329001 gaggcgtaaatttcaaaaaggatattggttgatttggcacgcggtgttatggacgatttggaaagcgaggaatgataggatt 55329082  T

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Target: chr4; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 199 - 315
Target Start/End: Original strand, 18847870 - 18847986
Alignment:
Q  199 tttcaacagtttgaatgttggaatggggaaattgggaggaggaaacttcgtaaaggttattggttgatatggcatgcggttttatggtcgatttggaagg 298  Q
    |||||||| ||||||||||||| |||||| ||||||| ||  || ||| ||||||| ||||||||||| ||||||||||| |||||| |||||||||| |    
T  18847870 tttcaacattttgaatgttggagtggggagattgggaagaaaaagctttgtaaagggtattggttgatttggcatgcggtattatggacgatttggaaag 18847969  T
Q  299 cccggaatgataggatt 315  Q
    |  | ||||||||||||    
T  18847970 caagaaatgataggatt 18847986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 165 - 315
Target Start/End: Complemental strand, 42111330 - 42111180
Alignment:
Q  165 gttgggaataaatttcattacaccgcaatctctttttcaacagtttgaatgttggaatggggaaattgggaggaggaaacttcgtaaaggttattggttg 264  Q
    |||||| || ||||| ||||| || ||| | || || ||||| ||||| ||||||| |||||| ||||||||    || |||||||||||||||||| ||    
T  42111330 gttggggattaattttattactcctcaaacgctcttccaacattttgagtgttggagtggggagattgggagactaaagcttcgtaaaggttattggatg 42111231  T
Q  265 atatggcatgcggttttatggtcgatttggaaggcccggaatgataggatt 315  Q
    || |||||||||||| | ||| ||||||||||  |  ||||||||||||||    
T  42111230 atttggcatgcggttctttggacgatttggaaaacgaggaatgataggatt 42111180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 214 - 315
Target Start/End: Original strand, 55353392 - 55353493
Alignment:
Q  214 tgttggaatggggaaattgggaggaggaaacttcgtaaaggttattggttgatatggcatgcggttttatggtcgatttggaaggcccggaatgatagga 313  Q
    |||||||||||||| || |||||| | ||  | || |||||||||||| || | |||||||||||  | |||||||||||||| ||  ||||||||||||    
T  55353392 tgttggaatggggagatcgggaggcgcaagttgcgaaaaggttattggatggtttggcatgcggtgatgtggtcgatttggaaagcgaggaatgatagga 55353491  T
Q  314 tt 315  Q
    ||    
T  55353492 tt 55353493  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 314 - 364
Target Start/End: Original strand, 28635727 - 28635778
Alignment:
Q  314 ttgggatctgggagtg-gctcctccttgaggtcttagattcgattccctctg 364  Q
    |||||||||||||||| ||||||||| |||||||||| |||||||| |||||    
T  28635727 ttgggatctgggagtgtgctcctcctggaggtcttaggttcgattctctctg 28635778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 106; Significance: 6e-53; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 39 - 296
Target Start/End: Original strand, 6231863 - 6232120
Alignment:
Q  39 taggcgtatactagcaccggtgtccttggggaggtgtgagttttgtgaacaagaggcggaaacggtaaatcatctttttctccattgtgtctggacattt 138  Q
    ||||||||||||| |||||||||| ||||||| |||||||||||||||  ||| ||  |||||||     ||||| ||||| |||||||  ||||| |||    
T  6231863 taggcgtatactaccaccggtgtctttggggaagtgtgagttttgtgataaagtggttgaaacggcggcacatctctttcttcattgtgagtggacgttt 6231962  T
Q  139 aatgtttggtcgaaggttggtaggtagttgggaataaatttcattacaccgcaatctctttttcaacagtttgaatgttggaatggggaaattgggagga 238  Q
    || || ||||||||||| ||| | | |||||| ||||||||||||||||| ||||| ||||||||||| ||||| |||||||||||||| |||||||||     
T  6231963 aaagtgtggtcgaaggtaggtggttggttggggataaatttcattacacctcaatccctttttcaacattttgagtgttggaatggggagattgggaggc 6232062  T
Q  239 ggaaacttcgtaaaggttattggttgatatggcatgcggttttatggtcgatttggaa 296  Q
    | || ||||| ||||||||||||||||| ||||| || || |||||||||||||||||    
T  6232063 gtaagcttcggaaaggttattggttgatttggcacgcagtgttatggtcgatttggaa 6232120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 193 - 311
Target Start/End: Original strand, 48887990 - 48888108
Alignment:
Q  193 tctctttttcaacagtttgaatgttggaatggggaaattgggaggaggaaacttcgtaaaggttattggttgatatggcatgcggttttatggtcgattt 292  Q
    ||||||||| | || ||||| |||||||||||||| ||||||||| | || ||||| ||||| |||||| |||| ||||||| ||| |||||| ||||||    
T  48887990 tctctttttaatcattttgagtgttggaatggggagattgggaggcgaaagcttcgcaaagggtattggatgatttggcatgtggtcttatggacgattt 48888089  T
Q  293 ggaaggcccggaatgatag 311  Q
    |||| || |||||||||||    
T  48888090 ggaaagctcggaatgatag 48888108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 181 - 235
Target Start/End: Complemental strand, 19883654 - 19883600
Alignment:
Q  181 attacaccgcaatctctttttcaacagtttgaatgttggaatggggaaattggga 235  Q
    |||||||| |||||||| |||||||| ||||||||||||| |||||| |||||||    
T  19883654 attacacctcaatctctgtttcaacattttgaatgttggagtggggagattggga 19883600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 314 - 357
Target Start/End: Original strand, 48771969 - 48772013
Alignment:
Q  314 ttgggatctgggagtg-gctcctccttgaggtcttagattcgatt 357  Q
    |||||||||||||||| ||||||||||||||||| || |||||||    
T  48771969 ttgggatctgggagtgtgctcctccttgaggtctcaggttcgatt 48772013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 98; Significance: 3e-48; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 39 - 296
Target Start/End: Complemental strand, 381113 - 380856
Alignment:
Q  39 taggcgtatactagcaccggtgtccttggggaggtgtgagttttgtgaacaagaggcggaaacggtaaatcatctttttctccattgtgtctggacattt 138  Q
    ||||||||||||| |||||||||| ||||||| |||||||||||||||  ||| ||  |||||||     ||||| ||||| |||||||  ||||| |||    
T  381113 taggcgtatactaccaccggtgtctttggggaagtgtgagttttgtgataaagtggttgaaacggcggcccatctctttcttcattgtgagtggacgttt 381014  T
Q  139 aatgtttggtcgaaggttggtaggtagttgggaataaatttcattacaccgcaatctctttttcaacagtttgaatgttggaatggggaaattgggagga 238  Q
    |  || ||||||||||| ||| | | |||||| ||||||||||||||||| ||||| ||||||||||| ||||| |||||||||||||| |||||||||     
T  381013 atagtgtggtcgaaggtaggtggttggttggggataaatttcattacacctcaatccctttttcaacattttgagtgttggaatggggagattgggaggc 380914  T
Q  239 ggaaacttcgtaaaggttattggttgatatggcatgcggttttatggtcgatttggaa 296  Q
    | || | ||| ||||||||||||||||| ||||| || || |||||||||||||||||    
T  380913 gtaagcctcggaaaggttattggttgatttggcacgcagtgttatggtcgatttggaa 380856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 74; Significance: 7e-34; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 22 - 315
Target Start/End: Original strand, 38970687 - 38970980
Alignment:
Q  22 aaagacaatcttttgactaggcgtatactagcaccggtgtccttggggaggtgtgagttttgtgaacaagaggcggaaacggtaaatcatctttttctcc 121  Q
    |||||||| ||||||| || |||||| |||||| |||||||| | || |||||||||||| |||||| || ||  ||||  |  |  |||||||| || |    
T  38970687 aaagacaaccttttgagtacgcgtatcctagcatcggtgtccctaggaaggtgtgagtttcgtgaactagtggttgaaatagcgacacatcttttccttc 38970786  T
Q  122 attgtgtctggacatttaatgtttggtcgaaggttggtaggtagttgggaataaatttcattacaccgcaatctctttttcaacagtttgaatgttggaa 221  Q
    |||| |  ||||| || || || ||||||||||| ||| | | |||    || |||||||||||||| |||||||| ||||| || ||||| ||||||||    
T  38970787 attgcgagtggactttcaaagtgtggtcgaaggtgggtggttggttacatattaatttcattacacctcaatctctatttcatcattttgagtgttggaa 38970886  T
Q  222 tggggaaattgggaggaggaaacttcgtaaaggttattggttgatatggcatgcggttttatggtcgatttggaaggcccggaatgataggatt 315  Q
    |||||| ||||||||| | |||||||| ||||||||||||||||| ||||| ||||| ||||||  ||||||||| |   ||||||||||||||    
T  38970887 tggggagattgggaggcgtaaacttcggaaaggttattggttgatttggcacgcggtgttatggatgatttggaaagagaggaatgataggatt 38970980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 175 - 275
Target Start/End: Complemental strand, 9017719 - 9017619
Alignment:
Q  175 aatttcattacaccgcaatctctttttcaacagtttgaatgttggaatggggaaattgggaggaggaaacttcgtaaaggttattggttgatatggcatg 274  Q
    ||||||| | |||| |||||| | |||||||| ||||||||||||| ||| || |||| || ||  | |||||||||||| ||||||||| | |||||||    
T  9017719 aatttcaatgcaccccaatctttgtttcaacaatttgaatgttggagtggtgatattgagaagaaaagacttcgtaaagggtattggttggtgtggcatg 9017620  T
Q  275 c 275  Q
    |    
T  9017619 c 9017619  T

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Target: scaffold0691 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0691
Description:

Target: scaffold0691; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 202 - 315
Target Start/End: Original strand, 997 - 1110
Alignment:
Q  202 caacagtttgaatgttggaatggggaaattgggaggaggaaacttcgtaaaggttattggttgatatggcatgcggttttatggtcgatttggaaggccc 301  Q
    ||||| ||||| ||||||| |||||| ||||||||    || || ||||||||||||||| |||| |||||||||||| | ||| |||| |||||  |      
T  997 caacattttgagtgttggagtggggagattgggagactaaagctccgtaaaggttattggatgatttggcatgcggttctttggacgatctggaaaacga 1096  T
Q  302 ggaatgataggatt 315  Q
    ||||||||||||||    
T  1097 ggaatgataggatt 1110  T

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