View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8804_low_7 (Length: 304)

Name: NF8804_low_7
Description: NF8804
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8804_low_7
NF8804_low_7
[»] chr3 (6 HSPs)
chr3 (1-286)||(15267061-15267345)
chr3 (107-261)||(15086006-15086159)
chr3 (137-241)||(25810566-25810670)
chr3 (143-256)||(49321912-49322020)
chr3 (1-49)||(15093772-15093820)
chr3 (41-81)||(15086181-15086221)
[»] chr5 (4 HSPs)
chr5 (134-261)||(702838-702965)
chr5 (201-262)||(28096148-28096209)
chr5 (137-240)||(32670887-32670990)
chr5 (28-69)||(32670771-32670812)
[»] chr1 (2 HSPs)
chr1 (137-248)||(5424607-5424718)
chr1 (195-257)||(15741394-15741456)
[»] scaffold0758 (1 HSPs)
scaffold0758 (142-243)||(4794-4890)
[»] chr4 (3 HSPs)
chr4 (145-256)||(29540777-29540888)
chr4 (143-224)||(39957157-39957238)
chr4 (201-256)||(20135535-20135589)
[»] chr7 (4 HSPs)
chr7 (152-261)||(22851393-22851502)
chr7 (203-261)||(28592476-28592534)
chr7 (176-256)||(44895214-44895294)
chr7 (163-219)||(21924791-21924847)
[»] chr6 (5 HSPs)
chr6 (178-253)||(26590243-26590318)
chr6 (188-263)||(31140210-31140285)
chr6 (201-261)||(2576157-2576217)
chr6 (202-261)||(26260270-26260328)
chr6 (209-253)||(24207526-24207570)
[»] chr2 (2 HSPs)
chr2 (137-232)||(38204513-38204608)
chr2 (221-261)||(37740759-37740799)


Alignment Details
Target: chr3 (Bit Score: 168; Significance: 5e-90; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 1 - 286
Target Start/End: Complemental strand, 15267345 - 15267061
Alignment:
Q  1 cgattcaggtgctattattctattatgtttgtttcattattttactgtataatgttgtcgcaaaaacatacatctggccgtgnnnnnnnnnnnnnnggaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                ||    
T  15267345 cgattcaggtgctattattctattatgtttgtttcattattttactgtataatgttgtcgcaaaaacatacatctggccgtgaaaaatgaaaaaaa--aa 15267248  T
Q  101 acgagtgttagaatttatctaatcagaaaaggtagtaatagataaatttgtttgtaaatgagtagaagagccttcgaataatgatggattggccgtagat 200  Q
    |||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||| ||||||| |     ||||    
T  15267247 acgagtgttagaatttatctaatcagaaaagggagcaatagataaatttgtttgtaaatgagtagaagagccttcgaataacgatggatag-----agat 15267153  T
Q  201 gaagataatcttgaacaatctaatgaaaatttgaatgatgacattctcat------caatgataatgttgatgtaggtgttgatgaccactt 286  Q
    ||||| ||||||||||||||||||||||||||||||||||||| ||||||      ||||||||||||||||||||| ||||||||||||||    
T  15267152 gaagacaatcttgaacaatctaatgaaaatttgaatgatgacaatctcatcaatgacaatgataatgttgatgtaggcgttgatgaccactt 15267061  T

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Target: chr3; HSP #2
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 107 - 261
Target Start/End: Complemental strand, 15086159 - 15086006
Alignment:
Q  107 gttagaatttatctaatcagaaaaggtagtaatagataaatttgtttgtaaatgagtagaagagccttcgaataatgatggattggccgtagatgaagat 206  Q
    ||||||||||||||||| | |||||| || ||||||||||||||||||||||||||||||||| ||||||| |||||||||||| |||||||||||||||    
T  15086159 gttagaatttatctaataa-aaaagggagcaatagataaatttgtttgtaaatgagtagaagaaccttcgagtaatgatggattagccgtagatgaagat 15086061  T
Q  207 aatcttgaacaatctaatgaaaatttgaatgatgacattctcatcaatgataatg 261  Q
    ||||||||||||||||||||||||||||||||||||| || ||||||||| ||||    
T  15086060 aatcttgaacaatctaatgaaaatttgaatgatgacaatcccatcaatgacaatg 15086006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 137 - 241
Target Start/End: Original strand, 25810566 - 25810670
Alignment:
Q  137 aatagataaatttgtttgtaaatgagtagaagagccttcgaataatgatggattggccgtagatgaagataatcttgaacaatctaatgaaaatttgaat 236  Q
    |||||||||||||||||||||   ||||| ||||  || |||||||| ||||||| ||||||| |||||| || ||||||||| |||||||||||||||     
T  25810566 aatagataaatttgtttgtaacctagtagtagagtttttgaataatgttggattgaccgtagaagaagatgattttgaacaatttaatgaaaatttgaaa 25810665  T
Q  237 gatga 241  Q
    |||||    
T  25810666 gatga 25810670  T

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Target: chr3; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 143 - 256
Target Start/End: Original strand, 49321912 - 49322020
Alignment:
Q  143 taaatttgtttgtaaatgagtagaagagccttcgaataatgatggattggccgtagatgaagataatcttgaacaatctaatgaaaatttgaatgatgac 242  Q
    |||||||||| ||||||||||||||||| |||  || ||||||| |      ||||| |||||||| |||||||| ||||||||||||||||||||||||    
T  49321912 taaatttgttagtaaatgagtagaagagtcttaaaacaatgatgaaa-----gtagaagaagataaccttgaacattctaatgaaaatttgaatgatgac 49322006  T
Q  243 attctcatcaatga 256  Q
    | ||||||| ||||    
T  49322007 aatctcatcgatga 49322020  T

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Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 15093820 - 15093772
Alignment:
Q  1 cgattcaggtgctattattctattatgtttgtttcattattttactgta 49  Q
    |||||| |||| |||||||||||||||||||||||||||||||| ||||    
T  15093820 cgattctggtgttattattctattatgtttgtttcattattttattgta 15093772  T

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Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 41 - 81
Target Start/End: Complemental strand, 15086221 - 15086181
Alignment:
Q  41 tttactgtataatgttgtcgcaaaaacatacatctggccgt 81  Q
    |||| ||||||||||| ||||||||||||||||||||||||    
T  15086221 tttattgtataatgttatcgcaaaaacatacatctggccgt 15086181  T

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Target: chr5 (Bit Score: 84; Significance: 6e-40; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 134 - 261
Target Start/End: Original strand, 702838 - 702965
Alignment:
Q  134 agtaatagataaatttgtttgtaaatgagtagaagagccttcgaataatgatggattggccgtagatgaagataatcttgaacaatctaatgaaaatttg 233  Q
    |||| |||||||||||||||||||| ||||| ||||| |||||||||||||||||||| || |||| ||| ||||||||||||||||||||||||||| |    
T  702838 agtagtagataaatttgtttgtaaacgagtaaaagagtcttcgaataatgatggattgaccatagaagaaaataatcttgaacaatctaatgaaaattcg 702937  T
Q  234 aatgatgacattctcatcaatgataatg 261  Q
    |||||||||| |||||||||||| ||||    
T  702938 aatgatgacaatctcatcaatgacaatg 702965  T

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Target: chr5; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 201 - 262
Target Start/End: Original strand, 28096148 - 28096209
Alignment:
Q  201 gaagataatcttgaacaatctaatgaaaatttgaatgatgacattctcatcaatgataatgt 262  Q
    ||||||||||||||||||||||||||||||| ||||||||||| || ||||||| |||||||    
T  28096148 gaagataatcttgaacaatctaatgaaaattggaatgatgacaatcccatcaataataatgt 28096209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 137 - 240
Target Start/End: Original strand, 32670887 - 32670990
Alignment:
Q  137 aatagataaatttgtttgtaaatgagtagaagagccttcgaataatgatggattggccgtagatgaagataatcttgaacaatctaatgaaaatttgaat 236  Q
    |||| ||||||||||||||||| || || |||||||| | ||||||  |||||||||| |||| ||| ||||| || | ||||||| | |||||||||||    
T  32670887 aataaataaatttgtttgtaaacgaatataagagcctgcaaataattgtggattggccatagaagaatataattttaagcaatctattaaaaatttgaat 32670986  T
Q  237 gatg 240  Q
    ||||    
T  32670987 gatg 32670990  T

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Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 28 - 69
Target Start/End: Original strand, 32670771 - 32670812
Alignment:
Q  28 tttgtttcattattttactgtataatgttgtcgcaaaaacat 69  Q
    |||||||||||||||||||||||||| ||||||| |||||||    
T  32670771 tttgtttcattattttactgtataatattgtcgccaaaacat 32670812  T

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Target: chr1 (Bit Score: 56; Significance: 3e-23; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 137 - 248
Target Start/End: Original strand, 5424607 - 5424718
Alignment:
Q  137 aatagataaatttgtttgtaaatgagtagaagagccttcgaataatgatggattggccgtagatgaagataatcttgaacaatctaatgaaaatttgaat 236  Q
    |||| ||||||||||||||||||||||| || || ||||  |||| ||||||||| |||| || |||||| |||||||||||||||||||| ||||||||    
T  5424607 aataaataaatttgtttgtaaatgagtataaaagtcttcacataaggatggattgaccgttgaagaagatgatcttgaacaatctaatgaacatttgaat 5424706  T
Q  237 gatgacattctc 248  Q
    ||| ||| ||||    
T  5424707 gattacaatctc 5424718  T

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Target: chr1; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 195 - 257
Target Start/End: Original strand, 15741394 - 15741456
Alignment:
Q  195 gtagatgaagataatcttgaacaatctaatgaaaatttgaatgatgacattctcatcaatgat 257  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||    
T  15741394 gtagaagaagataatcttgaacaatctaatgaaaatttgaatgatgacaatctcattaatgat 15741456  T

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Target: scaffold0758 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0758
Description:

Target: scaffold0758; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 142 - 243
Target Start/End: Original strand, 4794 - 4890
Alignment:
Q  142 ataaatttgtttgtaaatgagtagaagagccttcgaataatgatggattggccgtagatgaagataatcttgaacaatctaatgaaaatttgaatgatga 241  Q
    ||||||||||| ||||| |||||||||||||||  ||||||||||||      ||| | |||||||||||||||||||||||||||||||| ||||||||    
T  4794 ataaatttgttagtaaacgagtagaagagccttaaaataatgatggaa-----gtaaaagaagataatcttgaacaatctaatgaaaatttaaatgatga 4888  T

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Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 145 - 256
Target Start/End: Complemental strand, 29540888 - 29540777
Alignment:
Q  145 aatttgtttgtaaatgagtagaagagccttcgaataatgatggattggccgtagatgaagataatcttgaacaatctaatgaaaatttgaatgatgacat 244  Q
    |||||||||||||| |||||||||||||||| |||||||||||||||  ||||||  ||| |||| || || | ||||||||||| ||||| |||||||     
T  29540888 aatttgtttgtaaacgagtagaagagccttctaataatgatggattgatcgtagaaaaagttaatattaaatattctaatgaaaaattgaacgatgacaa 29540789  T
Q  245 tctcatcaatga 256  Q
    || |||| ||||    
T  29540788 tcccatccatga 29540777  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 143 - 224
Target Start/End: Original strand, 39957157 - 39957238
Alignment:
Q  143 taaatttgtttgtaaatgagtagaagagccttcgaataatgatggattggccgtagatgaagataatcttgaacaatctaat 224  Q
    ||||||||||| ||||  ||||||||||| ||| |||||||||| | ||  |||| |  |||||||||||||||||||||||    
T  39957157 taaatttgtttctaaagaagtagaagagcattcaaataatgatgaaatgatcgtaaaaaaagataatcttgaacaatctaat 39957238  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 201 - 256
Target Start/End: Original strand, 20135535 - 20135589
Alignment:
Q  201 gaagataatcttgaacaatctaatgaaaatttgaatgatgacattctcatcaatga 256  Q
    ||||||||||||||| |||||||| |||||||||||||||||| | |||| |||||    
T  20135535 gaagataatcttgaagaatctaat-aaaatttgaatgatgacaatttcattaatga 20135589  T

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Target: chr7 (Bit Score: 46; Significance: 3e-17; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 152 - 261
Target Start/End: Complemental strand, 22851502 - 22851393
Alignment:
Q  152 ttgtaaatgagtagaagagccttcgaataatgatggattggccgtagatgaagataatcttgaacaatctaatgaaaatttgaatgatgacattctcatc 251  Q
    |||||||  ||||||| || |||||||||| |||||||||| |||||| ||| ||||| | |||||||||||||||||||| || ||||||  || ||||    
T  22851502 ttgtaaacaagtagaaaagtcttcgaataacgatggattggtcgtagaagaaaataatgtcgaacaatctaatgaaaatttaaaagatgacgatcccatc 22851403  T
Q  252 aatgataatg 261  Q
    ||||| ||||    
T  22851402 aatgacaatg 22851393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 203 - 261
Target Start/End: Complemental strand, 28592534 - 28592476
Alignment:
Q  203 agataatcttgaacaatctaatgaaaatttgaatgatgacattctcatcaatgataatg 261  Q
    ||||||||||||| ||||||||||||||||||||||||||| |  ||||||||| ||||    
T  28592534 agataatcttgaaaaatctaatgaaaatttgaatgatgacaattccatcaatgacaatg 28592476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 176 - 256
Target Start/End: Original strand, 44895214 - 44895294
Alignment:
Q  176 gaataatgatggattggccgtagatgaagataatcttgaacaatctaatgaaaatttgaatgatgacattctcatcaatga 256  Q
    ||||||||||||||  | | ||||  |||||| ||||||||||| |||||||| |||||||||||| | ||||||||||||    
T  44895214 gaataatgatggatatgtcatagaaaaagatactcttgaacaatataatgaaattttgaatgatgataatctcatcaatga 44895294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 163 - 219
Target Start/End: Original strand, 21924791 - 21924847
Alignment:
Q  163 tagaagagccttcgaataatgatggattggccgtagatgaagataatcttgaacaat 219  Q
    |||||||| |||||||||||| |||||||| | |||| ||||||||||| |||||||    
T  21924791 tagaagagtcttcgaataatggtggattggtcatagaagaagataatctcgaacaat 21924847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 5e-16; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 178 - 253
Target Start/End: Original strand, 26590243 - 26590318
Alignment:
Q  178 ataatgatggattggccgtagatgaagataatcttgaacaatctaatgaaaatttgaatgatgacattctcatcaa 253  Q
    |||| ||| |||||| |||| | ||||||||||||||||||||||||||||||| ||||||||| | |||||||||    
T  26590243 ataacgattgattggtcgtaaaagaagataatcttgaacaatctaatgaaaattggaatgatgaaaatctcatcaa 26590318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 188 - 263
Target Start/End: Original strand, 31140210 - 31140285
Alignment:
Q  188 attggccgtagatgaagataatcttgaacaatctaatgaaaatttgaatgatgacattctcatcaatgataatgtt 263  Q
    ||||| |||||| |||||| |||| |||||||| |||||||||| ||||||||||| ||| |||||||||||||||    
T  31140210 attggtcgtagaagaagatgatctcgaacaatccaatgaaaattggaatgatgacaatcttatcaatgataatgtt 31140285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 201 - 261
Target Start/End: Complemental strand, 2576217 - 2576157
Alignment:
Q  201 gaagataatcttgaacaatctaatgaaaatttgaatgatgacattctcatcaatgataatg 261  Q
    ||||||||||||||||||||||||||||||| |||||||| || ||  |||||||| ||||    
T  2576217 gaagataatcttgaacaatctaatgaaaattggaatgatggcaatcatatcaatgaaaatg 2576157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 202 - 261
Target Start/End: Original strand, 26260270 - 26260328
Alignment:
Q  202 aagataatcttgaacaatctaatgaaaatttgaatgatgacattctcatcaatgataatg 261  Q
    |||||||||| |||||||| ||| ||| |||||||||||||| |||||||||||||||||    
T  26260270 aagataatct-gaacaatcgaataaaattttgaatgatgacaatctcatcaatgataatg 26260328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 209 - 253
Target Start/End: Original strand, 24207526 - 24207570
Alignment:
Q  209 tcttgaacaatctaatgaaaatttgaatgatgacattctcatcaa 253  Q
    |||||||||||||||| |||||||||| ||||||| |||||||||    
T  24207526 tcttgaacaatctaataaaaatttgaacgatgacaatctcatcaa 24207570  T

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Target: chr2 (Bit Score: 44; Significance: 5e-16; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 137 - 232
Target Start/End: Original strand, 38204513 - 38204608
Alignment:
Q  137 aatagataaatttgtttgtaaatgagtagaagagccttcgaataatgatggattggccgtagatgaagataatcttgaacaatctaatgaaaattt 232  Q
    |||| ||||||||||||||||| |||||||||||| ||| | || |||||||||||  ||||| ||| |||||||| |||||| |||| |||||||    
T  38204513 aataaataaatttgtttgtaaacgagtagaagagcattcaagtagtgatggattggttgtagaagaaaataatcttaaacaatttaattaaaattt 38204608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 221 - 261
Target Start/End: Complemental strand, 37740799 - 37740759
Alignment:
Q  221 taatgaaaatttgaatgatgacattctcatcaatgataatg 261  Q
    ||||||||||||||||||||||| || ||||||||| ||||    
T  37740799 taatgaaaatttgaatgatgacaatcccatcaatgacaatg 37740759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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