View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8804_low_9 (Length: 297)

Name: NF8804_low_9
Description: NF8804
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8804_low_9
NF8804_low_9
[»] chr6 (1 HSPs)
chr6 (110-278)||(14778143-14778312)
[»] scaffold0020 (1 HSPs)
scaffold0020 (185-278)||(105213-105307)
[»] chr3 (3 HSPs)
chr3 (110-187)||(43099021-43099097)
chr3 (226-286)||(8617237-8617296)
chr3 (226-284)||(8625109-8625166)
[»] chr7 (7 HSPs)
chr7 (179-250)||(15821879-15821950)
chr7 (209-278)||(20028734-20028804)
chr7 (185-278)||(39867990-39868079)
chr7 (179-249)||(35076499-35076570)
chr7 (178-249)||(3335265-3335340)
chr7 (165-249)||(35091005-35091091)
chr7 (185-259)||(19243019-19243093)
[»] chr5 (4 HSPs)
chr5 (196-278)||(22705534-22705617)
chr5 (226-284)||(5434333-5434390)
chr5 (226-284)||(5448149-5448206)
chr5 (232-280)||(22960491-22960538)
[»] scaffold0243 (1 HSPs)
scaffold0243 (185-266)||(22245-22326)
[»] scaffold0002 (1 HSPs)
scaffold0002 (114-266)||(361496-361634)
[»] chr8 (2 HSPs)
chr8 (143-250)||(23641020-23641124)
chr8 (179-249)||(24653804-24653871)
[»] chr2 (1 HSPs)
chr2 (180-208)||(17332371-17332399)


Alignment Details
Target: chr6 (Bit Score: 150; Significance: 3e-79; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 110 - 278
Target Start/End: Complemental strand, 14778312 - 14778143
Alignment:
Q  110 aattctcatgcatctttattattccacatattacatatttattttcggtcatttgttttattacatggatttagaatgtatatttaggcttaatgtaaat 209  Q
    ||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  14778312 aattctcatgcatatttattattccacatattacatatttattttccgtcatttgttttattacatggatttagaatgtatatttacgcttaatgtaaat 14778213  T
Q  210 ttatcttgcatatttgt-ttttcgcagactttagaatgtatatataggcttcatgtaaatcattcatgtg 278  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14778212 ttatcttgcatatttgttttttcgcagactttagaatgtatatataggcttcatgtaaatcattcatgtg 14778143  T

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Target: scaffold0020 (Bit Score: 59; Significance: 5e-25; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 185 - 278
Target Start/End: Complemental strand, 105307 - 105213
Alignment:
Q  185 atgtatatttaggcttaatgtaaatttatcttgcatatttgtttttc-gcagactttagaatgtatatataggcttcatgtaaatcattcatgtg 278  Q
    ||||||| |||||||||||||||||||||| ||||||||| |||| | ||||||||||||||||||||||||| ||  |||||||||||||||||    
T  105307 atgtatacttaggcttaatgtaaatttatcatgcatatttattttgccgcagactttagaatgtatatataggtttattgtaaatcattcatgtg 105213  T

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Target: chr3 (Bit Score: 58; Significance: 2e-24; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 110 - 187
Target Start/End: Original strand, 43099021 - 43099097
Alignment:
Q  110 aattctcatgcatctttattattccacatattacatatttattttcggtcatttgttttattacatggatttagaatg 187  Q
    ||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||| ||||    
T  43099021 aattctcatgcttctttattattccacatattacatatttattttc-gtcatttgttttattacatagatttataatg 43099097  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 226 - 286
Target Start/End: Original strand, 8617237 - 8617296
Alignment:
Q  226 tttttcgcagactttagaatgtatatataggcttcatgtaaatcattcatgtgcgtgtgtg 286  Q
    ||||| |||||||||||||||||| | ||||||| ||||||||||| |||||| |||||||    
T  8617237 ttttttgcagactttagaatgtattt-taggcttaatgtaaatcatgcatgtgtgtgtgtg 8617296  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 226 - 284
Target Start/End: Original strand, 8625109 - 8625166
Alignment:
Q  226 tttttcgcagactttagaatgtatatataggcttcatgtaaatcattcatgtgcgtgtg 284  Q
    ||||| |||||||||||||||||| | ||||||| ||||||||||| |||||| |||||    
T  8625109 ttttttgcagactttagaatgtat-tttaggcttaatgtaaatcatgcatgtgtgtgtg 8625166  T

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Target: chr7 (Bit Score: 56; Significance: 3e-23; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 179 - 250
Target Start/End: Original strand, 15821879 - 15821950
Alignment:
Q  179 tttagaatgtatatttaggcttaatgtaaatttatcttgcatatttgtttttcgcagactttagaatgtata 250  Q
    ||||||||||| ||||||| |||||||||||||||| ||||||||| |||||||||||||||||||||||||    
T  15821879 tttagaatgtacatttagggttaatgtaaatttatcatgcatatttatttttcgcagactttagaatgtata 15821950  T

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Target: chr7; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 209 - 278
Target Start/End: Original strand, 20028734 - 20028804
Alignment:
Q  209 tttatcttgcatatttgtttt-tcgcagactttagaatgtatatataggcttcatgtaaatcattcatgtg 278  Q
    |||||||||||||||| |||| |||||||||||||||||||||||||||||  ||||||||||||||||||    
T  20028734 tttatcttgcatatttattttttcgcagactttagaatgtatatataggctaaatgtaaatcattcatgtg 20028804  T

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Target: chr7; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 185 - 278
Target Start/End: Original strand, 39867990 - 39868079
Alignment:
Q  185 atgtatatttaggcttaatgtaaatttatcttgcatatttgtttttcgcagactttagaatgtatatataggcttcatgtaaatcattcatgtg 278  Q
    ||||||| |||| ||||||||||||||||| || |||||| |||| |    ||||||||||||||||||||| || ||||||||||||||||||    
T  39867990 atgtatacttagacttaatgtaaatttatcatgtatatttattttgc----actttagaatgtatatataggtttaatgtaaatcattcatgtg 39868079  T

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Target: chr7; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 179 - 249
Target Start/End: Original strand, 35076499 - 35076570
Alignment:
Q  179 tttagaatgtatatttaggcttaatgtaaatttatcttgcatattt-gtttttcgcagactttagaatgtat 249  Q
    ||||||||||||||||||| |||||||||||||||  || ||||||  ||||||||||||||||||||||||    
T  35076499 tttagaatgtatatttagggttaatgtaaatttatgatgtatatttattttttcgcagactttagaatgtat 35076570  T

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Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 178 - 249
Target Start/End: Complemental strand, 3335340 - 3335265
Alignment:
Q  178 atttagaatgtatatttaggcttaatgtaaatttatcttgca----tatttgtttttcgcagactttagaatgtat 249  Q
    ||||||||||||||||||||||||||||||||||||  ||||    ||||| |||||||||| |||||||||||||    
T  3335340 atttagaatgtatatttaggcttaatgtaaatttatggtgcatatttatttatttttcgcaggctttagaatgtat 3335265  T

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Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 165 - 249
Target Start/End: Original strand, 35091005 - 35091091
Alignment:
Q  165 ttttattacatggattt-agaatgtatatttaggcttaatgtaaatttatcttgcatattt-gtttttcgcagactttagaatgtat 249  Q
    ||||||| ||||||||| | |||||||||||||  |||||||||||||||| |||||||||  ||||||||||| ||||||||||||    
T  35091005 ttttattgcatggattttataatgtatatttagcattaatgtaaatttatcatgcatatttattttttcgcagattttagaatgtat 35091091  T

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Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 185 - 259
Target Start/End: Complemental strand, 19243093 - 19243019
Alignment:
Q  185 atgtatatttaggcttaatgtaaatttatcttgcatatttgtttt-tcgcagactttagaatgtatatataggctt 259  Q
    ||||||| |||||||||||||||||||||| ||||||||| ||||  | |||||||||||||||||| ||||||||    
T  19243093 atgtatacttaggcttaatgtaaatttatcatgcatatttattttgccacagactttagaatgtata-ataggctt 19243019  T

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Target: chr5 (Bit Score: 52; Significance: 8e-21; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 196 - 278
Target Start/End: Original strand, 22705534 - 22705617
Alignment:
Q  196 ggcttaatgtaaatttatcttgcatatttgttttt-cgcagactttagaatgtatatataggcttcatgtaaatcattcatgtg 278  Q
    ||||||||||||||||||| ||||||||| ||||  ||||||||||||||||||||||||| |||  |||||||||||||||||    
T  22705534 ggcttaatgtaaatttatcatgcatatttattttggcgcagactttagaatgtatatatagacttattgtaaatcattcatgtg 22705617  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 226 - 284
Target Start/End: Complemental strand, 5434390 - 5434333
Alignment:
Q  226 tttttcgcagactttagaatgtatatataggcttcatgtaaatcattcatgtgcgtgtg 284  Q
    ||||| |||||||||||||||||| | ||||||| ||||||||||| |||||| |||||    
T  5434390 ttttttgcagactttagaatgtattt-taggcttaatgtaaatcatgcatgtgtgtgtg 5434333  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 226 - 284
Target Start/End: Complemental strand, 5448206 - 5448149
Alignment:
Q  226 tttttcgcagactttagaatgtatatataggcttcatgtaaatcattcatgtgcgtgtg 284  Q
    ||||| |||||||||||||||||| | ||||||| ||||||||||| |||||| |||||    
T  5448206 ttttttgcagactttagaatgtattt-taggcttaatgtaaatcatgcatgtgtgtgtg 5448149  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 232 - 280
Target Start/End: Complemental strand, 22960538 - 22960491
Alignment:
Q  232 gcagactttagaatgtatatataggcttcatgtaaatcattcatgtgcg 280  Q
    ||||||||||||||||||| |||||||| ||||||||||  ||||||||    
T  22960538 gcagactttagaatgtata-ataggcttaatgtaaatcacgcatgtgcg 22960491  T

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Target: scaffold0243 (Bit Score: 47; Significance: 7e-18; HSPs: 1)
Name: scaffold0243
Description:

Target: scaffold0243; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 185 - 266
Target Start/End: Original strand, 22245 - 22326
Alignment:
Q  185 atgtatatttaggcttaatgtaaatttatcttgcatatttgtttt-tcgcagactttagaatgtatatataggcttcatgtaa 266  Q
    ||||||| |||||||||||||||||||||| ||||||||| ||||  |||||||||||||||||||| |||||||| ||||||    
T  22245 atgtatacttaggcttaatgtaaatttatcatgcatatttattttgccgcagactttagaatgtata-ataggcttaatgtaa 22326  T

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Target: scaffold0002 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 114 - 266
Target Start/End: Complemental strand, 361634 - 361496
Alignment:
Q  114 ctcatgcatctttattattccacatattacatatttattttcggtcatttgttttattacatggatttagaatgtatatttaggcttaatgtaaatttat 213  Q
    |||||||||||||||||||||||||||||||||||||||      |||       |||||||||||||||||||||||||||||||||||||||    ||    
T  361634 ctcatgcatctttattattccacatattacatatttattcca---cat-------attacatggatttagaatgtatatttaggcttaatgtaa----at 361549  T
Q  214 cttgcatatttgttttt-cgcagactttagaatgtatatataggcttcatgtaa 266  Q
    | ||||||||| ||||| |||||| |||||||| ||| || |||||| ||||||    
T  361548 catgcatatttatttttccgcagattttagaatatatcta-aggctttatgtaa 361496  T

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Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 143 - 250
Target Start/End: Complemental strand, 23641124 - 23641020
Alignment:
Q  143 catatttattttcggtcatttgttttattacatggatttagaatgtatatttaggcttaatgtaaatttatcttgcatatttgtttttcgcagactttag 242  Q
    ||||||||||||  ||||||| |||||  ||| |  ||||||||||| ||||||| |||||||||||||||| ||||||||| ||||||||| || ||||    
T  23641124 catatttatttt--gtcatttattttacaacaagattttagaatgtacatttagggttaatgtaaatttatcatgcatatttatttttcgca-acattag 23641028  T
Q  243 aatgtata 250  Q
    ||||||||    
T  23641027 aatgtata 23641020  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 179 - 249
Target Start/End: Complemental strand, 24653871 - 24653804
Alignment:
Q  179 tttagaatgtatatttaggcttaatgtaaatttatcttgcatatttgtttttc-gcagactttagaatgtat 249  Q
    ||||||||||||||||||| ||||||||||||     ||||||||| |||||| ||||||||||||||||||    
T  24653871 tttagaatgtatatttaggattaatgtaaatta----tgcatatttatttttccgcagactttagaatgtat 24653804  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 180 - 208
Target Start/End: Complemental strand, 17332399 - 17332371
Alignment:
Q  180 ttagaatgtatatttaggcttaatgtaaa 208  Q
    |||||||||||||||||||||||||||||    
T  17332399 ttagaatgtatatttaggcttaatgtaaa 17332371  T

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