View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8805_high_1 (Length: 646)
Name: NF8805_high_1
Description: NF8805
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8805_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 489; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 489; E-Value: 0
Query Start/End: Original strand, 19 - 631
Target Start/End: Original strand, 34780569 - 34781196
Alignment:
| Q |
19 |
gggtgaggccgaagaggttagagatattgctcgtgatgttcttaagatctttggagaatatagtgttacaaactttatttggcctttgaacaagtttaag |
118 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34780569 |
gggtgaggccgaagaggttagagatattgctcgtgatgttcttaagatctttggagaatatagtgttacaaactttatttggcctttgaacaagtttaag |
34780668 |
T |
|
| Q |
119 |
tttggaaactatgacaagagaactgaggagattttcaataagtatgatcctatcattgaaaaggttatcaagaaacgacaagagattgtgaacaaaagaa |
218 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34780669 |
tttggaaactatgataagagaactgaggagattttcaataagtatgatcctatcattgaaaaggttatcaagaaacgacaagagattgtgaacaaaagaa |
34780768 |
T |
|
| Q |
219 |
aaaatggagaaatcgtagagggcgagcagaatgttgtttttcttgacactttgcttgaatttgcacaagatgagaccatggagatcaaaattacaaagga |
318 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34780769 |
aaaatggagaaatcgtagatggcgagcagaatgttgtttttcttgacactttgcttgaatttgcacaagatgagaccatggagatcaaaattacaaagga |
34780868 |
T |
|
| Q |
319 |
gcaaatcaagggtcttgttgtggtaagtttcttctgattgtctttgtttcttatcttataaatacattctaattaatttaaattccattaatcgacggtg |
418 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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|
| T |
34780869 |
acaaatcaagggtcttgttgtggtaagtttcttctgattgtctttgtttcttatcttataaatacattctaattaatttaaattccattaatcaacggtg |
34780968 |
T |
|
| Q |
419 |
ttaagtattggcatgatcgtgattccattcatcatctaacatcnnnnnnntcacactagcacannnnnnngtaccaacaaactaattactaaa------- |
511 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||| |
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| T |
34780969 |
ttaagtattggcatgatcgtgattccattcatcatctaacataaaaaaaatcacactagcacatttctttgtaccaacaaactaattactaaattgagaa |
34781068 |
T |
|
| Q |
512 |
-------ctgagatgttattaaactaagaaagattttaaattgtataccac--tggtaccttatttgaatatggtttagtaagttaaattatatgtacta |
602 |
Q |
| |
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|||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
34781069 |
tctcaatttgagatgttattgaactaagaaagattttaaattgtataccactgtggtaccttatttgaatatggtttagtaagttaaattatatgtaata |
34781168 |
T |
|
| Q |
603 |
tgaaccttgcaatgctctaacattgattt |
631 |
Q |
| |
|
|||||||||||||| |||||||||||||| |
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| T |
34781169 |
tgaaccttgcaatg-tctaacattgattt |
34781196 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 317; E-Value: 1e-178
Query Start/End: Original strand, 19 - 351
Target Start/End: Complemental strand, 34763543 - 34763211
Alignment:
| Q |
19 |
gggtgaggccgaagaggttagagatattgctcgtgatgttcttaagatctttggagaatatagtgttacaaactttatttggcctttgaacaagtttaag |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
34763543 |
gggtgaggccgaagaggttagagatattgctcgtgatgttcttaagatctttggagaatatagtgttacaaactttatttggcctttgaacaagtttaag |
34763444 |
T |
|
| Q |
119 |
tttggaaactatgacaagagaactgaggagattttcaataagtatgatcctatcattgaaaaggttatcaagaaacgacaagagattgtgaacaaaagaa |
218 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
34763443 |
tttggaaactatgataagagaactgaggagattttcaataagtatgatcctatcattgaaaaggttatcaagaaacgacaagagattgtgaacaaaagaa |
34763344 |
T |
|
| Q |
219 |
aaaatggagaaatcgtagagggcgagcagaatgttgtttttcttgacactttgcttgaatttgcacaagatgagaccatggagatcaaaattacaaagga |
318 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
34763343 |
aaaatggagaaatcgtagaaggcgagcagaatgttgtttttcttgacactttgcttgaatttgcacaagatgagaccatggagatcaaaattacaaagga |
34763244 |
T |
|
| Q |
319 |
gcaaatcaagggtcttgttgtggtaagtttctt |
351 |
Q |
| |
|
||||||||||||||||||||||| |||||||| |
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|
| T |
34763243 |
acaaatcaagggtcttgttgtggtgagtttctt |
34763211 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 19 - 427
Target Start/End: Complemental strand, 34755567 - 34755159
Alignment:
| Q |
19 |
gggtgaggccgaagaggttagagatattgctcgtgatgttcttaagatctttggagaatatagtgttacaaactttatttggcctttgaacaagtttaag |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||| || ||||| ||||||||||||||| |
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|
| T |
34755567 |
gggtgaggccgaagaggttagagatattgctcgcgatgttcttgagatctttggagaatatagtgttacaaacttcatatggccattgaacaagtttaag |
34755468 |
T |
|
| Q |
119 |
tttggaaactatgacaagagaactgaggagattttcaataagtatgatcctatcattgaaaaggttatcaagaaacgacaagagattgtgaacaaaagaa |
218 |
Q |
| |
|
|||||||||||||| ||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
34755467 |
tttggaaactatgagaagagaattgacgagattttcaataagtatgatcctatcattgaaaaggttatcaagaaacgacaagagattgtgaacaaaagaa |
34755368 |
T |
|
| Q |
219 |
aaaatggagaaatcgtagagggcgagcagaatgttgtttttcttgacactttgcttgaatttgcacaagatgagaccatggagatcaaaattacaaagga |
318 |
Q |
| |
|
|||||||||||||| ||||||||||||||| ||| ||||||||||| ||||||||||||| ||| || |||||||||||||| ||||||||||| ||||| |
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|
| T |
34755367 |
aaaatggagaaatcatagagggcgagcagagtgtagtttttcttgatactttgcttgaatatgctcaggatgagaccatggacatcaaaattaccaagga |
34755268 |
T |
|
| Q |
319 |
gcaaatcaagggtcttgttgtggtaagtttcttctgattgtctttgtttcttatcttataaatacattctaattaatttaaattccattaatcgacggtg |
418 |
Q |
| |
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||||||||||||||||||||||||||||| |||| ||||||||||||||||||||| ||| || || |||||||||||||||| ||| ||| | ||| |
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|
| T |
34755267 |
acaaatcaagggtcttgttgtggtaagtttattctaattgtctttgtttcttatcttctaattatatgctaattaatttaaatttcatcgatcaatagtg |
34755168 |
T |
|
| Q |
419 |
ttaagtatt |
427 |
Q |
| |
|
||||||||| |
|
|
| T |
34755167 |
ttaagtatt |
34755159 |
T |
|
Back To:
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