View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8805_low_2 (Length: 606)
Name: NF8805_low_2
Description: NF8805
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8805_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 513; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 513; E-Value: 0
Query Start/End: Original strand, 18 - 595
Target Start/End: Complemental strand, 746028 - 745451
Alignment:
| Q |
18 |
gttcttgtcatcaatgcatgcattattgttcttcccacataatgcggtttctaaactctctactttcactcactatcaaaagtaaaatactctacttagt |
117 |
Q |
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| T |
746028 |
gttcttgtcatcaatgcatgcattattgttcttcccacataatgcggtttctaaactctctactttcattcactatcaaaagtaaaatactctacttggt |
745929 |
T |
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| Q |
118 |
taattttacacaaaaggtnnnnnnncactctagaaaaatgatcttgtgaacctttctattttaattacagtttctaaatagcgtttctaaggttaaaaat |
217 |
Q |
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| T |
745928 |
taattttacccaaaaggtaaaaaaacactctagaaaaataatcttgtcaacctttctactttaattacagtttctaaatagcgtttctaaggttaaaaat |
745829 |
T |
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| Q |
218 |
ggtttagatttgattaattaaagtgtgacattgcataaatcttacgcattcctaaataatcattcacttcttgacttttattgtcatcataccatattac |
317 |
Q |
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| T |
745828 |
ggtttagatttgattaattaaagtgtgacattgcataaatcttacgcattcctaaataatcattcacttcttgacttttattgtcatcataccatattac |
745729 |
T |
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| Q |
318 |
tccctacttaacatcaatcaatcaattgtttatctttaaattgcaaaataatcaattgtttcttagtacacccaaccatcaatcaatgactccaaatcaa |
417 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
745728 |
tccctacttaacattaatcaatcaattgtttatctttaaattgcaaaataatcaattgtttcttagtacacccaaacatcaatcaatgactccaaatcaa |
745629 |
T |
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| Q |
418 |
ataagaaaacataaattattcgttgtgggtcaatcatgcattacaagacaaagttacctacaatatcatattcttcaatctataatcaagaattaatata |
517 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
745628 |
ataagcaaacataaattattcgttgtgggtcaatcatgcattacaagacaaagttacctacaatgtcatattcttcaatctataatcaagaattaatata |
745529 |
T |
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| Q |
518 |
attgttgctacttaatttattcaatttaattagttcacacttgttacttgatgcagctgctagtggtcctgggttcat |
595 |
Q |
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| T |
745528 |
attgttgccacttaatttattcaatttaattagttcacacttgttacttgatgcagctgctagtggtcctgggttcat |
745451 |
T |
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