View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8805_low_3 (Length: 410)
Name: NF8805_low_3
Description: NF8805
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8805_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 280; Significance: 1e-157; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 86 - 401
Target Start/End: Original strand, 30239926 - 30240240
Alignment:
| Q |
86 |
tcataattgatacaaacactagtgcagaagccattgttattgatgctaacattgatattccaatagaagaagatattcatgtcataattgatagcacaaa |
185 |
Q |
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| T |
30239926 |
tcataattgatactaacactagtgcagaagccattgttattgatactaacattgatattc-aatagaagaagatattcatgtcataattgatagcacaaa |
30240024 |
T |
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| Q |
186 |
tagcactaatgcaactgttaatgtttgtaacacaaataaaggtgtcccaattggtgatccatttgcaaatgttgagaccatagtcacatatgtgaagaat |
285 |
Q |
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| T |
30240025 |
taacactaatgcaactgttaatgtttgtaacacaaatgaaggtgtcccaattggtgatccatttgcaaatgttgagaccatagtcacatatgtgaagaat |
30240124 |
T |
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| Q |
286 |
tcggtacgtatggggtatagagattcagtacgcgtttgttcgcagtactaatgctaaaaagaaacaagtccaacactatatgataaaataagccacttca |
385 |
Q |
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| T |
30240125 |
tcggtacgtatggggtatagagcttcagtacgcgtctgttcgcagtactaatgctaaaaagaaacaagtccaacactatatgatgaaataagccacttca |
30240224 |
T |
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| Q |
386 |
tgcaaaaaagaataat |
401 |
Q |
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| T |
30240225 |
tgcaaaaaagaataat |
30240240 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 20 - 91
Target Start/End: Original strand, 30239806 - 30239877
Alignment:
| Q |
20 |
acatggtacacttggaatccatcatgaacctgtgttgcaactggtaatgcccactgcaccagtggttcataa |
91 |
Q |
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| T |
30239806 |
acatgttacacttggaatccatcatgaacctgtgttgcaactggtaatgcccactgcaccagtggttcataa |
30239877 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 275 - 304
Target Start/End: Complemental strand, 45982998 - 45982969
Alignment:
| Q |
275 |
atgtgaagaattcggtacgtatggggtata |
304 |
Q |
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| T |
45982998 |
atgtgaagaattcggtacgtatggggtata |
45982969 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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