View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8805_low_4 (Length: 402)
Name: NF8805_low_4
Description: NF8805
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8805_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 260; Significance: 1e-145; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 120 - 387
Target Start/End: Original strand, 30769596 - 30769863
Alignment:
| Q |
120 |
cattggactatatgaaaagatatcacatgggtgtgggagggtaaaggtaccttggcttgatcgtggatgcttctgcaaaagtatgccagagtctagtcag |
219 |
Q |
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| T |
30769596 |
cattggactatatgaaaagatatcacatgggtgtgggagggtaaaggtaccttggcttgatcgtggatgcttctgcaaaagtatgccagagtctagtcag |
30769695 |
T |
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| Q |
220 |
agaaaagatgaaagattttttgattgttttagccccacaaacgcatacatatatatttgataccttgcctcttgcacttgtatgtttttagtttaactcc |
319 |
Q |
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| T |
30769696 |
agaaaagatgaaagattttttgattgttttagccccacaaacgcatacatatatatttgataccttgcctcttgcaattatatgtttttagtttaactcc |
30769795 |
T |
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| Q |
320 |
aatcctgtctacaaacatattcatagtacataaatagatatagagatgggataagatatgtgatttct |
387 |
Q |
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| T |
30769796 |
aatcctgtctacaaacatattcatagtacataaatagatatagagatgggataagatatgtgatttct |
30769863 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 30769477 - 30769569
Alignment:
| Q |
1 |
aacgtggaaactcaggattttaacaagatttatgcagaatttcaacatgaaacaaattcattgtaataggctagtagtaataagttaataggt |
93 |
Q |
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| T |
30769477 |
aacgtggaaactcaggattttaacaagatttatgcagaatttcaacatgaaacaaattcattgtaataggctagtagtaataagttaagaggt |
30769569 |
T |
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