View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8805_low_5 (Length: 397)
Name: NF8805_low_5
Description: NF8805
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8805_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 224; Significance: 1e-123; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 127 - 379
Target Start/End: Original strand, 42310781 - 42311037
Alignment:
| Q |
127 |
aaatctaaatgcttgtttataattaatgatacattttttcttggtattttacctccaagtctaattattggaatacccttatgt----gggtgcatagtt |
222 |
Q |
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| T |
42310781 |
aaatctaaatgcttgtttataattaatgatacattttttcttggtattttacctccaagtctaattattggaatacccttacgtacgtgggtgcatagtt |
42310880 |
T |
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| Q |
223 |
cataaacccaaaccaaactggaccatatttatgatctggttcagctcctaaatgtgtttcagtacgtgtgacattcaagataaactaattttgactaatt |
322 |
Q |
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| T |
42310881 |
cataaacccaaaccaaactggaccatatttatgatctggttcagctcctaaatgtgtttcagtacgtgtgacatttaagataaactaattttgactaatt |
42310980 |
T |
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| Q |
323 |
gataacagaatttgaatattaatgttagtcacattgcaactttcgagaagatatata |
379 |
Q |
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| T |
42310981 |
gataacataatttgaatattcatgttagtcacattgcaactttcgagaagatatata |
42311037 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 17 - 94
Target Start/End: Original strand, 42310708 - 42310785
Alignment:
| Q |
17 |
aaaaatacaagacaaatagaaacatgtgcaccagattttaaacaaaaacaacgtatatatagaaacaatcataaaatc |
94 |
Q |
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| T |
42310708 |
aaaaatacaagacaaatagaaacatgtgcaccagattttaaacaaaaacaatgtatatatagaaacaatcataaaatc |
42310785 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 49; Significance: 6e-19; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 92 - 206
Target Start/End: Complemental strand, 51568553 - 51568437
Alignment:
| Q |
92 |
atcctatcacaaatc-agtctgatagcaaaccatttaaatctaaatgcttgtttataattaatgatacattttttcttggtattttacctc-caagtcta |
189 |
Q |
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| T |
51568553 |
atcctatcacaaaaccaatctggtagcaaaccaattaaatctaaatgcttgctgataattaatgatacatatttcctttgtattttccctcttaagtcta |
51568454 |
T |
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| Q |
190 |
attattggaataccctt |
206 |
Q |
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| T |
51568453 |
actattggaacaccctt |
51568437 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 298 - 342
Target Start/End: Complemental strand, 51568349 - 51568305
Alignment:
| Q |
298 |
caagataaactaattttgactaattgataacagaatttgaatatt |
342 |
Q |
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| T |
51568349 |
caagataaactaattttgactaattgataacagaatttgaatatt |
51568305 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 289 - 376
Target Start/End: Original strand, 47975326 - 47975413
Alignment:
| Q |
289 |
tgtgacattcaagataaactaattttgactaattgataacagaatttgaatattaatgttagtcacattgcaactttcgagaagatat |
376 |
Q |
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| T |
47975326 |
tgtgacattcaagataaactaagtttgactaattgatagcagaattcaaatattcgtgcaagtcacatcacaacttacaagaagatat |
47975413 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 124 - 206
Target Start/End: Original strand, 47975195 - 47975277
Alignment:
| Q |
124 |
tttaaatctaaatgcttgtttataattaatgatacattttttcttggtattttacctccaagtctaattattggaataccctt |
206 |
Q |
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| T |
47975195 |
tttaaatctgaatccttgttgataattaatgatacatttttcctttgtaatttaccttcatgtctgactatcggaataccctt |
47975277 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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