View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8805_low_7 (Length: 364)

Name: NF8805_low_7
Description: NF8805
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8805_low_7
NF8805_low_7
[»] chr4 (6 HSPs)
chr4 (212-353)||(55560731-55560876)
chr4 (116-153)||(55560932-55560969)
chr4 (18-62)||(24039253-24039297)
chr4 (28-66)||(55561018-55561056)
chr4 (18-46)||(55620212-55620240)
chr4 (18-46)||(55627516-55627544)
[»] chr1 (7 HSPs)
chr1 (18-51)||(19920519-19920552)
chr1 (18-51)||(10394144-10394177)
chr1 (18-51)||(28990313-28990346)
chr1 (21-62)||(36076888-36076929)
chr1 (18-51)||(39277902-39277935)
chr1 (18-51)||(47422181-47422214)
chr1 (18-62)||(45823107-45823151)
[»] chr8 (4 HSPs)
chr8 (18-50)||(12655021-12655053)
chr8 (18-46)||(13557159-13557187)
chr8 (18-46)||(13557459-13557487)
chr8 (18-46)||(31933591-31933619)
[»] chr7 (3 HSPs)
chr7 (18-62)||(16833458-16833502)
chr7 (18-51)||(6000493-6000526)
chr7 (18-46)||(25731937-25731965)
[»] chr5 (4 HSPs)
chr5 (18-66)||(18968822-18968870)
chr5 (18-46)||(8417578-8417606)
chr5 (18-66)||(9989955-9990003)
chr5 (18-62)||(18968512-18968556)
[»] chr3 (2 HSPs)
chr3 (18-62)||(11047298-11047342)
chr3 (18-46)||(31071234-31071262)
[»] chr2 (2 HSPs)
chr2 (18-62)||(12261144-12261188)
chr2 (18-51)||(21304342-21304375)
[»] chr6 (1 HSPs)
chr6 (18-66)||(1211393-1211441)


Alignment Details
Target: chr4 (Bit Score: 116; Significance: 6e-59; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 212 - 353
Target Start/End: Complemental strand, 55560876 - 55560731
Alignment:
Q  212 tgaactttttaattgttcaaaagggcaaa-cctaagagaaaagaaaactacaagactacactatattcttaa---tacaggcttttgacatgttatcaaa 307  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||   |||| ||||||||||||||||||||    
T  55560876 tgaactttttaattgttcaaaagggcaaaacctaagagaaaagaaaactacaagactacactatattcttaaaaatacaagcttttgacatgttatcaaa 55560777  T
Q  308 gaggagatcttggagtttcacgataggaacctcttgaaatctaaca 353  Q
    |||||||||||||||||||||||||||||||||| |||||||||||    
T  55560776 gaggagatcttggagtttcacgataggaacctctagaaatctaaca 55560731  T

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Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 116 - 153
Target Start/End: Complemental strand, 55560969 - 55560932
Alignment:
Q  116 ccacctgatatactataatctagattacggattacact 153  Q
    ||||||||||||||||||||||||||||||||||||||    
T  55560969 ccacctgatatactataatctagattacggattacact 55560932  T

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Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 18 - 62
Target Start/End: Complemental strand, 24039297 - 24039253
Alignment:
Q  18 aaaccgatacttgaaatcaagttaagggatcaatctaacatttaa 62  Q
    ||||||||||||||||||||||||||||||||||  |||||||||    
T  24039297 aaaccgatacttgaaatcaagttaagggatcaattgaacatttaa 24039253  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 28 - 66
Target Start/End: Complemental strand, 55561056 - 55561018
Alignment:
Q  28 ttgaaatcaagttaagggatcaatctaacatttaaacct 66  Q
    ||||||||||||||||||||||||| | |||||||||||    
T  55561056 ttgaaatcaagttaagggatcaatcgagcatttaaacct 55561018  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 46
Target Start/End: Complemental strand, 55620240 - 55620212
Alignment:
Q  18 aaaccgatacttgaaatcaagttaaggga 46  Q
    |||||||||||||||||||||||||||||    
T  55620240 aaaccgatacttgaaatcaagttaaggga 55620212  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 46
Target Start/End: Complemental strand, 55627544 - 55627516
Alignment:
Q  18 aaaccgatacttgaaatcaagttaaggga 46  Q
    |||||||||||||||||||||||||||||    
T  55627544 aaaccgatacttgaaatcaagttaaggga 55627516  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 18 - 51
Target Start/End: Complemental strand, 19920552 - 19920519
Alignment:
Q  18 aaaccgatacttgaaatcaagttaagggatcaat 51  Q
    ||||||||||||||||||||||||||||||||||    
T  19920552 aaaccgatacttgaaatcaagttaagggatcaat 19920519  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 51
Target Start/End: Complemental strand, 10394177 - 10394144
Alignment:
Q  18 aaaccgatacttgaaatcaagttaagggatcaat 51  Q
    ||||||||||||||||||||||||||||| ||||    
T  10394177 aaaccgatacttgaaatcaagttaagggaccaat 10394144  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 51
Target Start/End: Complemental strand, 28990346 - 28990313
Alignment:
Q  18 aaaccgatacttgaaatcaagttaagggatcaat 51  Q
    ||||||||||||||||||||||||||||| ||||    
T  28990346 aaaccgatacttgaaatcaagttaagggaccaat 28990313  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 62
Target Start/End: Complemental strand, 36076929 - 36076888
Alignment:
Q  21 ccgatacttgaaatcaagttaagggatcaatctaacatttaa 62  Q
    |||||||||||||||||||||||||| ||||  |||||||||    
T  36076929 ccgatacttgaaatcaagttaagggaacaattaaacatttaa 36076888  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 51
Target Start/End: Original strand, 39277902 - 39277935
Alignment:
Q  18 aaaccgatacttgaaatcaagttaagggatcaat 51  Q
    ||||||||||||||||||||||||||||| ||||    
T  39277902 aaaccgatacttgaaatcaagttaagggaccaat 39277935  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 51
Target Start/End: Original strand, 47422181 - 47422214
Alignment:
Q  18 aaaccgatacttgaaatcaagttaagggatcaat 51  Q
    ||||||||||||||||||||||||||||| ||||    
T  47422181 aaaccgatacttgaaatcaagttaagggaccaat 47422214  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 62
Target Start/End: Original strand, 45823107 - 45823151
Alignment:
Q  18 aaaccgatacttgaaatcaagttaagggatcaatctaacatttaa 62  Q
    ||||| ||| ||||||||||||||||||||||||  |||||||||    
T  45823107 aaaccaatatttgaaatcaagttaagggatcaattgaacatttaa 45823151  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 50
Target Start/End: Original strand, 12655021 - 12655053
Alignment:
Q  18 aaaccgatacttgaaatcaagttaagggatcaa 50  Q
    |||||||||||||||||||||||||||||||||    
T  12655021 aaaccgatacttgaaatcaagttaagggatcaa 12655053  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 46
Target Start/End: Complemental strand, 13557187 - 13557159
Alignment:
Q  18 aaaccgatacttgaaatcaagttaaggga 46  Q
    |||||||||||||||||||||||||||||    
T  13557187 aaaccgatacttgaaatcaagttaaggga 13557159  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 46
Target Start/End: Original strand, 13557459 - 13557487
Alignment:
Q  18 aaaccgatacttgaaatcaagttaaggga 46  Q
    |||||||||||||||||||||||||||||    
T  13557459 aaaccgatacttgaaatcaagttaaggga 13557487  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 46
Target Start/End: Original strand, 31933591 - 31933619
Alignment:
Q  18 aaaccgatacttgaaatcaagttaaggga 46  Q
    |||||||||||||||||||||||||||||    
T  31933591 aaaccgatacttgaaatcaagttaaggga 31933619  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 62
Target Start/End: Complemental strand, 16833502 - 16833458
Alignment:
Q  18 aaaccgatacttgaaatcaagttaagggatcaatctaacatttaa 62  Q
    ||||| ||||||||||||||||||||||||||||  |||||||||    
T  16833502 aaaccaatacttgaaatcaagttaagggatcaattaaacatttaa 16833458  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 51
Target Start/End: Complemental strand, 6000526 - 6000493
Alignment:
Q  18 aaaccgatacttgaaatcaagttaagggatcaat 51  Q
    ||||||||||||||||||||||||||||| ||||    
T  6000526 aaaccgatacttgaaatcaagttaagggaccaat 6000493  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 46
Target Start/End: Complemental strand, 25731965 - 25731937
Alignment:
Q  18 aaaccgatacttgaaatcaagttaaggga 46  Q
    |||||||||||||||||||||||||||||    
T  25731965 aaaccgatacttgaaatcaagttaaggga 25731937  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 66
Target Start/End: Original strand, 18968822 - 18968870
Alignment:
Q  18 aaaccgatacttgaaatcaagttaagggatcaatctaacatttaaacct 66  Q
    ||||||||||||||||||||||||||| ||||||  | |||||||||||    
T  18968822 aaaccgatacttgaaatcaagttaaggaatcaattgagcatttaaacct 18968870  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 46
Target Start/End: Complemental strand, 8417606 - 8417578
Alignment:
Q  18 aaaccgatacttgaaatcaagttaaggga 46  Q
    |||||||||||||||||||||||||||||    
T  8417606 aaaccgatacttgaaatcaagttaaggga 8417578  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 66
Target Start/End: Complemental strand, 9990003 - 9989955
Alignment:
Q  18 aaaccgatacttgaaatcaagttaagggatcaatctaacatttaaacct 66  Q
    |||||||| ||| |||||||||||||||| ||||  |||||||||||||    
T  9990003 aaaccgattcttaaaatcaagttaagggaccaattgaacatttaaacct 9989955  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 62
Target Start/End: Complemental strand, 18968556 - 18968512
Alignment:
Q  18 aaaccgatacttgaaatcaagttaagggatcaatctaacatttaa 62  Q
    ||||| |||||||||||||||||||||||| ||| || |||||||    
T  18968556 aaaccaatacttgaaatcaagttaagggattaatttagcatttaa 18968512  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 62
Target Start/End: Original strand, 11047298 - 11047342
Alignment:
Q  18 aaaccgatacttgaaatcaagttaagggatcaatctaacatttaa 62  Q
    ||||||||||||||||||||||||||||| ||||  |||||||||    
T  11047298 aaaccgatacttgaaatcaagttaagggaccaattgaacatttaa 11047342  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 46
Target Start/End: Original strand, 31071234 - 31071262
Alignment:
Q  18 aaaccgatacttgaaatcaagttaaggga 46  Q
    |||||||||||||||||||||||||||||    
T  31071234 aaaccgatacttgaaatcaagttaaggga 31071262  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 62
Target Start/End: Original strand, 12261144 - 12261188
Alignment:
Q  18 aaaccgatacttgaaatcaagttaagggatcaatctaacatttaa 62  Q
    ||||||||||||||||||||||||||||| ||||  |||||||||    
T  12261144 aaaccgatacttgaaatcaagttaagggaccaattgaacatttaa 12261188  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 51
Target Start/End: Complemental strand, 21304375 - 21304342
Alignment:
Q  18 aaaccgatacttgaaatcaagttaagggatcaat 51  Q
    ||||||||| ||||||||||||||||||||||||    
T  21304375 aaaccgatatttgaaatcaagttaagggatcaat 21304342  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 66
Target Start/End: Complemental strand, 1211441 - 1211393
Alignment:
Q  18 aaaccgatacttgaaatcaagttaagggatcaatctaacatttaaacct 66  Q
    |||| ||||||| |||||||||||||||||||||  | |||||||||||    
T  1211441 aaactgatacttcaaatcaagttaagggatcaattgagcatttaaacct 1211393  T

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