View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8805_low_8 (Length: 254)
Name: NF8805_low_8
Description: NF8805
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8805_low_8 |
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Alignment Details
Target: chr6 (Bit Score: 224; Significance: 1e-123; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 22400212 - 22400451
Alignment:
| Q |
1 |
cttgctaagattaaggatcatgagtggagggtgttggtgagtatgaatggtggagatccattggttgatcgtaataaggagttggtgaaattgttggagg |
100 |
Q |
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| T |
22400212 |
cttgctaagattaaggatcatgagtggagggtgttggtgagtatgaatggtggagatccattggttgatcgtaataaggagttggtgaaattgttggagg |
22400311 |
T |
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| Q |
101 |
aaaagggtgtggaagtggtgaaggattttcaagaagatggttttcatggggttgagttttttgagccatccaaagcaaagaactttattgaggtagtgaa |
200 |
Q |
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| T |
22400312 |
aaaagggtgtggaagtggtgaaggattttcaagaagatggttttcatggagttgagttttttgagctatccaaagcaaagaactttattgaggtggtgaa |
22400411 |
T |
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| Q |
201 |
aggtttcatctcctagttcgatgattagggtcaacatgtt |
240 |
Q |
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| T |
22400412 |
aggtttcatctcctagttcgatgcttagggtcaacatgtt |
22400451 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 6 - 209
Target Start/End: Original strand, 22416051 - 22416254
Alignment:
| Q |
6 |
taagattaaggatcatgagtggagggtgttggtgagtatgaatggtggagatccattggttgatcgtaataaggagttggtgaaattgttggaggaaaag |
105 |
Q |
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| T |
22416051 |
taagataaaggatcaagggtggagggtattggtgagtattaacggtggggatctattggctgatcgtgctaaagagttagtgcaattgatggatgagaag |
22416150 |
T |
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| Q |
106 |
ggtgtggaagtggtgaaggattttcaagaagatggttttcatggggttgagttttttgagccatccaaagcaaagaactttattgaggtagtgaaaggtt |
205 |
Q |
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| T |
22416151 |
ggtgtggaagttgtcaaagattttcaggaagaaggttttcatggggttgagttttttgagccatccaaagcaaagaaatttattaagttagtgaagggct |
22416250 |
T |
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| Q |
206 |
tcat |
209 |
Q |
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|||| |
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| T |
22416251 |
tcat |
22416254 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 31 - 149
Target Start/End: Original strand, 22496359 - 22496477
Alignment:
| Q |
31 |
gtgttggtgagtatgaatggtggagatccattggttgatcgtaataaggagttggtgaaattgttggaggaaaagggtgtggaagtggtgaaggattttc |
130 |
Q |
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|||||||||||| |||||||| |||||| ||||||||||| | || ||||||| ||||| |||||||||||||||| | || ||||| || ||| |
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| T |
22496359 |
gtgttggtgagtggaaatggtggggatccagtggttgatcgtgagaaagagttggcacaattgatggaggaaaagggtgttcatgttgtgaaagactttg |
22496458 |
T |
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| Q |
131 |
aagaagatggttttcatgg |
149 |
Q |
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| T |
22496459 |
atgaagatggttgtcatgg |
22496477 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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