View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8806_high_1 (Length: 459)
Name: NF8806_high_1
Description: NF8806
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8806_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 335; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 18 - 382
Target Start/End: Complemental strand, 527077 - 526711
Alignment:
| Q |
18 |
catttggtttgcttcttctcttgtccttgttgacctattctgatacatgttcttgctgtgtttttgatgtggagtattaaacatgttgcttgtttctttg |
117 |
Q |
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| T |
527077 |
catttggtttgcttcttctcttgtccttgttgacctattctgatacatgttcttgctgtgtttttgatgtggagtattaaacatgttgcttgtttctttg |
526978 |
T |
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| Q |
118 |
ttactcttataacctgccagaacaggaattcaaaaatattgattcaacaatgtgatcagaagcaaatgtgtagaagaggtaaa--atatcaattaatgta |
215 |
Q |
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| T |
526977 |
ttactcttataacctgccagaacaggaattcaaaaatattgattcaacaatgtgatcagaagcaaatgtgtagaagaggtaaaatatatcaattaatgta |
526878 |
T |
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| Q |
216 |
tttgacagtcacagttacggtcacttaattggaaaagttaatgactatgcaggacagtaactcagtaaggtactaacaatgttnnnnnnntaagaataaa |
315 |
Q |
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| T |
526877 |
tttgacagtcacagttacggtcacttaattggaaaagttaatgactatgcaggacagtaactcagtaaggtactaacaatgttcaaaaaataagaataaa |
526778 |
T |
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| Q |
316 |
atattcattctatgattatcaatttaatctatcattgagttgagtcaactagaaacagacgtagaac |
382 |
Q |
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| T |
526777 |
atattcattctatgattatcaatttaatctatcattgagttgagtcaactagaaacagacgtagaac |
526711 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 418 - 450
Target Start/End: Complemental strand, 526675 - 526643
Alignment:
| Q |
418 |
gttcagcttcaagtttaatcatcgtagaataat |
450 |
Q |
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| T |
526675 |
gttcatcttcaagtttaatcatcgtagaataat |
526643 |
T |
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