View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8806_high_4 (Length: 408)
Name: NF8806_high_4
Description: NF8806
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8806_high_4 |
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Alignment Details
Target: chr8 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 1 - 333
Target Start/End: Original strand, 12508486 - 12508818
Alignment:
| Q |
1 |
tttttgcttcatttgtttgtggtgatgattctaatccttgatcatcactgcatggtgttgtcccgtctgttgatactgctagggcgaagttggttcgagc |
100 |
Q |
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| T |
12508486 |
tttttgcttcatttgtttgtggtgatgatactaatccttgatcatcactgcatggtgttgtaccgtctgttgatactgctagggcgaagttggttcgagc |
12508585 |
T |
|
| Q |
101 |
attttctccgcgtaaagctcaagcagcttcgtcgtaagctcgagcagcttcttctggtgtgtcataggttccaagccataatcttacatgttgagatgag |
200 |
Q |
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| T |
12508586 |
attttctccgcgtaaagctcgagcagcttcgtcgtaagctcgagcagcttcttctggtgtgtcataggttccaagccataatcttacatgttgagatgag |
12508685 |
T |
|
| Q |
201 |
tctttgatctcagctacccatctacctgatggcctttgtctcacaccaatgaatcttctcatgtttggnnnnnnngatttggtcatgttgtttgtagcag |
300 |
Q |
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| T |
12508686 |
tctttgatctcagctacccatctacctgatggcctttgtctcacaccaatgaatcttctcatgttcggtttttttgatttggttatgttgtttgtagcag |
12508785 |
T |
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| Q |
301 |
aagcatattttgtagcttcagttccagacataa |
333 |
Q |
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| T |
12508786 |
aagcatattttgtagcttcagttccagacataa |
12508818 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 123 - 249
Target Start/End: Original strand, 33274267 - 33274393
Alignment:
| Q |
123 |
gcagcttcgtcgtaagctcgagcagcttcttctggtgtgtcataggttccaagccataatcttacatgttgagatgagtctttgatctcagctacccatc |
222 |
Q |
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|||||||| || ||||||| ||| ||||| || | ||| ||| | ||||||||||| | ||||| | |||| || ||||||||||||||||||||||| |
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| T |
33274267 |
gcagcttcatcataagctctagctgcttcctcagctgtctcaaatgttccaagccacattcttatcttctgagttgtgtctttgatctcagctacccatc |
33274366 |
T |
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| Q |
223 |
tacctgatggcctttgtctcacaccaa |
249 |
Q |
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| T |
33274367 |
tccctgatggcctttgcctaacaccaa |
33274393 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 201 - 249
Target Start/End: Complemental strand, 3160268 - 3160220
Alignment:
| Q |
201 |
tctttgatctcagctacccatctacctgatggcctttgtctcacaccaa |
249 |
Q |
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| T |
3160268 |
tcttttatctcagctacccatcttcctgatggcctttgtctcacaccaa |
3160220 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 195 - 244
Target Start/End: Complemental strand, 46024103 - 46024054
Alignment:
| Q |
195 |
gatgagtctttgatctcagctacccatctacctgatggcctttgtctcac |
244 |
Q |
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| T |
46024103 |
gatgagtctttgatctcagctatccatcttcctgatggcctttgcctcac |
46024054 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 195 - 244
Target Start/End: Original strand, 46265264 - 46265313
Alignment:
| Q |
195 |
gatgagtctttgatctcagctacccatctacctgatggcctttgtctcac |
244 |
Q |
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|||||||||||||||||||||| |||||| |||||||||||||| ||||| |
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| T |
46265264 |
gatgagtctttgatctcagctatccatcttcctgatggcctttgcctcac |
46265313 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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