View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8806_low_12 (Length: 205)
Name: NF8806_low_12
Description: NF8806
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8806_low_12 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 163; Significance: 3e-87; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 14 - 205
Target Start/End: Original strand, 39811773 - 39811960
Alignment:
| Q |
14 |
acatcacaactctattaaaagcttttggagaaaatcgttccttaagaaaactagctaatcttgtaagtaacaacttaacataattcaattgccacacttg |
113 |
Q |
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| T |
39811773 |
acataacaactctattaaaggcttttggagaaaatcgttccttaagaaaactagctaatcttgtaagtaacaacttaacataattcaattgccacacttg |
39811872 |
T |
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| Q |
114 |
gtggaaaatatgattgagcaattgtgaaatgactaatatgtttctaaacagacccttataatgggaaacagagatgacatagaagatatgtc |
205 |
Q |
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| T |
39811873 |
gtggaaaata----tgagcaattgtgaaatgacaaatatgtttctaaacagacccttataatgggaaacagagatgacatagaagatatgtc |
39811960 |
T |
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