View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8806_low_2 (Length: 441)

Name: NF8806_low_2
Description: NF8806
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8806_low_2
NF8806_low_2
[»] chr3 (12 HSPs)
chr3 (16-441)||(24617481-24617906)
chr3 (16-379)||(24105876-24106238)
chr3 (16-178)||(24113423-24113584)
chr3 (263-379)||(24113288-24113410)
chr3 (43-210)||(24101665-24101834)
chr3 (99-153)||(24616871-24616925)
chr3 (61-131)||(23359762-23359832)
chr3 (61-131)||(23364583-23364653)
chr3 (61-131)||(23695061-23695131)
chr3 (61-131)||(23713501-23713571)
chr3 (61-131)||(23731957-23732027)
chr3 (61-131)||(23750412-23750482)
[»] chr8 (3 HSPs)
chr8 (392-441)||(1343438-1343487)
chr8 (392-441)||(1356100-1356149)
chr8 (394-434)||(1349886-1349926)


Alignment Details
Target: chr3 (Bit Score: 389; Significance: 0; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 16 - 441
Target Start/End: Original strand, 24617481 - 24617906
Alignment:
Q  16 atatatattggcttaaacacaataaaggggaaaattcacagtatgaaattacctgaaaacaatgtatccatctgcatgcctgcatacataattgaattca 115  Q
    ||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  24617481 atatatattggcttaaacacaattaaggggaaaattcacagtatgacattacctgaaaacaatgtatccatctgcatgcctgcatacatgattgaattca 24617580  T
Q  116 accaaatctccatcacgagattccgatccttcccctttagtaacatctgatttcaaaactaatgtgtctctatttatgtgccaacacatgtatttcatca 215  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  24617581 accaaatctccatcacgagattccgatccttcccctttagtaacatctgatttcaaaactaatgtgtccctatttatgtgccaacacatgtatttcatca 24617680  T
Q  216 cagcatgattcaatgtaaaattcacaaggtttaattannnnnnnaaaaataacaaaccaagtatctacacttctatttgaaaagagaggcatgtaatgat 315  Q
    |||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24617681 cagcatgattcaatgtaaaattcacaaggtttaattatttttttaaaaataacaaaccaagtatctacacttctatttgaaaagagaggcatgtaatgat 24617780  T
Q  316 caaatactgttaacttatctacttgtgatgtggagaacaaagttctaaatcgagccgcaagtattagtattacaaaaaggatcttccaagacttctccaa 415  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24617781 caaatactgttaacttatctacttgtgatgtggagaacaaagttctaaatcgagccgcaagtattagtattacaaaaaggatcttccaagacttctccaa 24617880  T
Q  416 tatgtcttcctcaacaagtcactcct 441  Q
    ||||||||||||||||||||||||||    
T  24617881 tatgtcttcctcaacaagtcactcct 24617906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 16 - 379
Target Start/End: Complemental strand, 24106238 - 24105876
Alignment:
Q  16 atatatattggcttaaacacaataaaggggaaaattcacagtatgaaattacctgaaaacaatgtatccatctgcatgcctgcatacataattgaattca 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  24106238 atatatattggcttaaacacaataaaggggaaaattcacagtatgaaattacctgaaaacaaagtatccatctgcatgcctgcatacataattgaattca 24106139  T
Q  116 accaaatctccatcacgagattccgatccttcccctttagtaacatctgatttcaaaactaatgtgtctctatttatgtgccaacacatgtatttcatca 215  Q
    ||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||| |||    
T  24106138 accaaatctccatcacgagattctggtccttcccctttagtaacatctgatttcaaaactaatgtgtctctatttatgcgctaacacatgtatttcttca 24106039  T
Q  216 cagcatgattcaatgtaaaattcacaaggtttaattannnnnnnaaaaataacaaaccaagtatctacacttctatttgaaaagagaggcatgtaatgat 315  Q
    |||| ||||||||||||||||||||||||||||||||        ||||||||||||||||||||| |||||||||||||||| ||||||||||||||||    
T  24106038 cagcttgattcaatgtaaaattcacaaggtttaattattttttttaaaataacaaaccaagtatctgcacttctatttgaaaaaagaggcatgtaatgat 24105939  T
Q  316 caaatactgttaacttatctacttgtgatgtggagaacaaagttctaaatcgagccgcaagtat 379  Q
    ||||||||  |||||| |||||||||||||||||||||||||||||||||||||| ||||||||    
T  24105938 caaatactcctaactt-tctacttgtgatgtggagaacaaagttctaaatcgagcagcaagtat 24105876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 16 - 178
Target Start/End: Complemental strand, 24113584 - 24113423
Alignment:
Q  16 atatatattggcttaaacacaataaaggggaaaattcacagtatgaaattacctgaaaacaatgtatccatctgcatgcctgcatacataattgaattca 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  24113584 atatatattggcttaaacacaataaaggggaaaattcacagtatgaaattacctgaaaacaaagtatccatctgcatgcctgcatacataattgaattca 24113485  T
Q  116 accaaatctccatcacgagattccgatccttcccctttagtaacatctgatttcaaaactaat 178  Q
    ||||||||||||||||| ||||||| ||||||| ||||||||||||||||||| |||||||||    
T  24113484 accaaatctccatcacgtgattccggtccttccactttagtaacatctgattt-aaaactaat 24113423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 263 - 379
Target Start/End: Complemental strand, 24113410 - 24113288
Alignment:
Q  263 aataacaaaccaagtatctacacttctatttgaaaagagaggcatgtaatgatcaaatactgttaacttatctac---------ttgtgatgtggagaac 353  Q
    |||||||||| ||||||||||||||||||||||||   |||||||||||||||||||||||| ||||||||||||         ||||| ||||||||||    
T  24113410 aataacaaactaagtatctacacttctatttgaaa---gaggcatgtaatgatcaaatactgctaacttatctactgacatacattgtggtgtggagaac 24113314  T
Q  354 aaagttctaaatcgagccgcaagtat 379  Q
    |||||||||||| |||||||||||||    
T  24113313 aaagttctaaattgagccgcaagtat 24113288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 43 - 210
Target Start/End: Complemental strand, 24101834 - 24101665
Alignment:
Q  43 gggaaaattcacagtatgaaattacctgaaaacaatgtatccatctgcatgcctgcatacataattgaattcaaccaaatctccatcacgagattccgat 142  Q
    ||||||||||| |  ||||||| |||||||||||| |||||||| |||| | ||||||||| ||||||||||||||||||| ||  |  | | ||| | |    
T  24101834 gggaaaattcatatcatgaaatcacctgaaaacaaagtatccatttgcacgtctgcatacacaattgaattcaaccaaatcgcccccgtgtgcttctggt 24101735  T
Q  143 ccttcccctttagtaacatctgatttcaaaactaatgt--gtctctatttatgtgccaacacatgtattt 210  Q
    |||||||||| ||||||| || |||| ||||||||| |  || ||||||||||||| |||||||||||||    
T  24101734 ccttccccttcagtaacaactaatttgaaaactaatataagtatctatttatgtgctaacacatgtattt 24101665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 99 - 153
Target Start/End: Original strand, 24616871 - 24616925
Alignment:
Q  99 atacataattgaattcaaccaaatctccatcacgagattccgatccttccccttt 153  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  24616871 atacataattgaattcaaccaaatctccatcacgagattccggtccttccccttt 24616925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 61 - 131
Target Start/End: Original strand, 23359762 - 23359832
Alignment:
Q  61 aaattacctgaaaacaatgtatccatctgcatgcctgcatacataattgaattcaaccaaatctccatcac 131  Q
    ||||||||| |||||||||| ||||| |||| ||  || | |||||||||| ||||||||||||| |||||    
T  23359762 aaattacctcaaaacaatgtctccatttgcacgcaggcgtgcataattgaaatcaaccaaatctcaatcac 23359832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 61 - 131
Target Start/End: Original strand, 23364583 - 23364653
Alignment:
Q  61 aaattacctgaaaacaatgtatccatctgcatgcctgcatacataattgaattcaaccaaatctccatcac 131  Q
    ||||||||| |||||||||| ||||| |||| ||  || | |||||||||| ||||||||||||| |||||    
T  23364583 aaattacctcaaaacaatgtctccatttgcacgcaggcgtgcataattgaaatcaaccaaatctcaatcac 23364653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 61 - 131
Target Start/End: Original strand, 23695061 - 23695131
Alignment:
Q  61 aaattacctgaaaacaatgtatccatctgcatgcctgcatacataattgaattcaaccaaatctccatcac 131  Q
    ||||||||| |||||||||| ||||| |||| ||  || | |||||||||| ||||||||||||| |||||    
T  23695061 aaattacctcaaaacaatgtctccatttgcacgcaggcgtgcataattgaaatcaaccaaatctcaatcac 23695131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 61 - 131
Target Start/End: Original strand, 23713501 - 23713571
Alignment:
Q  61 aaattacctgaaaacaatgtatccatctgcatgcctgcatacataattgaattcaaccaaatctccatcac 131  Q
    ||||||||| |||||||||| ||||| |||| ||  || | |||||||||| ||||||||||||| |||||    
T  23713501 aaattacctcaaaacaatgtctccatttgcacgcaggcgtgcataattgaaatcaaccaaatctcaatcac 23713571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 61 - 131
Target Start/End: Original strand, 23731957 - 23732027
Alignment:
Q  61 aaattacctgaaaacaatgtatccatctgcatgcctgcatacataattgaattcaaccaaatctccatcac 131  Q
    ||||||||| |||||||||| ||||| |||| ||  || | |||||||||| ||||||||||||| |||||    
T  23731957 aaattacctcaaaacaatgtctccatttgcacgcaggcgtgcataattgaaatcaaccaaatctcaatcac 23732027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 61 - 131
Target Start/End: Original strand, 23750412 - 23750482
Alignment:
Q  61 aaattacctgaaaacaatgtatccatctgcatgcctgcatacataattgaattcaaccaaatctccatcac 131  Q
    ||||||||| |||||||||| ||||| |||| ||  || | |||||||||| ||||||||||||| |||||    
T  23750412 aaattacctcaaaacaatgtctccatttgcacgcaggcgtgcataattgaaatcaaccaaatctcaatcac 23750482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 50; Significance: 2e-19; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 392 - 441
Target Start/End: Original strand, 1343438 - 1343487
Alignment:
Q  392 aaggatcttccaagacttctccaatatgtcttcctcaacaagtcactcct 441  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1343438 aaggatcttccaagacttctccaatatgtcttcctcaacaagtcactcct 1343487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 392 - 441
Target Start/End: Complemental strand, 1356149 - 1356100
Alignment:
Q  392 aaggatcttccaagacttctccaatatgtcttcctcaacaagtcactcct 441  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1356149 aaggatcttccaagacttctccaatatgtcttcctcaacaagtcactcct 1356100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 394 - 434
Target Start/End: Original strand, 1349886 - 1349926
Alignment:
Q  394 ggatcttccaagacttctccaatatgtcttcctcaacaagt 434  Q
    ||||||| ||||| |||||||||||||||||||||||||||    
T  1349886 ggatcttgcaagagttctccaatatgtcttcctcaacaagt 1349926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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