View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8806_low_3 (Length: 427)
Name: NF8806_low_3
Description: NF8806
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8806_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 377; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 15 - 411
Target Start/End: Complemental strand, 22971128 - 22970732
Alignment:
| Q |
15 |
agaagaagtagttggtggaggcgagacacatagcgaggagagcgattgaagccttgtggagttgagagggaagcccagaatgtgattatcacggaggaga |
114 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
22971128 |
agaagaagtagttggtggaggtgagacacatagcgaggagagcgattgaagccttgtggagttgagagggaagccgagaatgtgattatcacggaggaga |
22971029 |
T |
|
| Q |
115 |
taacagaaacagagagagttcggcacgaacgtcgacgagaaagcgtcgcagcatttggtggaagcagtctccgtgaggttgtttggaggagacgaaacgt |
214 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22971028 |
taacagaaacagagagagttcggcacgaacgtcgaccagaaagcgtcgcagcatttggtggaagcagtctccgtgaggttgtttggaggagacgaaacgt |
22970929 |
T |
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| Q |
215 |
aagaaagacagggagagaatagaagtagctgattggtgcaaccttctcgagaggaaggtggtggcggcgccgccgctactgtaacggcggagataccgag |
314 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
22970928 |
aagaaagacagggagagaatagaagtagctgatcggtgcaaccttctcgagaggaaggtggtggcggcgccaccgctactgtaacggcggagataccgag |
22970829 |
T |
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| Q |
315 |
actcagcatgaggaagaagaagaaggtgttttccatgttggagaaaaacggttagggatttggcgggagagaaacgaagtgatgcgagtgaattatc |
411 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22970828 |
actcagcatgaggaagaagaagaaggtgttttccatgttggagaaaaacggttagggatttggcgggagagaaacgaagtgatgcgagtgaattatc |
22970732 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 372; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 12 - 411
Target Start/End: Original strand, 1131380 - 1131779
Alignment:
| Q |
12 |
gagagaagaagtagttggtggaggcgagacacatagcgaggagagcgattgaagccttgtggagttgagagggaagcccagaatgtgattatcacggagg |
111 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||| |||||||||| |||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
1131380 |
gagagaagaagtagttggtggaggtgagacacatagcgaggaaagcgattgaatccttgtggagttgagagggaagccgagaatgtgattatcacggagg |
1131479 |
T |
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| Q |
112 |
agataacagaaacagagagagttcggcacgaacgtcgacgagaaagcgtcgcagcatttggtggaagcagtctccgtgaggttgtttggaggagacgaaa |
211 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1131480 |
agataacagaaacagagagagttcggcaagaacgtcgacgagaaagcgtcgcagcatttggtggaagcagtctccgtgaggttgtttggaggagacgaaa |
1131579 |
T |
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| Q |
212 |
cgtaagaaagacagggagagaatagaagtagctgattggtgcaaccttctcgagaggaaggtggtggcggcgccgccgctactgtaacggcggagatacc |
311 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1131580 |
cgtaagaaagacagggagagaatagaagtagctgatcggtgcaaccttctcgagaggaaggtggtggcggcgccgccgctactgtaacggcggagatact |
1131679 |
T |
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| Q |
312 |
gagactcagcatgaggaagaagaagaaggtgttttccatgttggagaaaaacggttagggatttggcgggagagaaacgaagtgatgcgagtgaattatc |
411 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1131680 |
gagactcagcatgaggaagaagaagaaggtgttttccatgttggagaaaaacggttagggatttggcgggagagaaacgaagtgatgcgagtgaattatc |
1131779 |
T |
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