View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8806_low_4 (Length: 422)
Name: NF8806_low_4
Description: NF8806
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8806_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 223; Significance: 1e-122; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 71 - 406
Target Start/End: Original strand, 43535177 - 43535512
Alignment:
| Q |
71 |
gttgagtgaatgaatccatagatgtttaagcacctttaccttttctaccnnnnnnnnnnnnt-----taaatagcacttggaccgccaactttatatcaa |
165 |
Q |
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| T |
43535177 |
gttgagtgaatgaatccatagatgtttaagcacctttaccttttctaccaaaaaaaaaaaaaaaatctaaacagcacttggaccgccaactttatatcaa |
43535276 |
T |
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| Q |
166 |
accacttcgtctagtcctaagactcgtgcttggggttgtgaaccgtcaatattatattaaaggttcaacatcctctcgtaagggccaattaaccttaggg |
265 |
Q |
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| T |
43535277 |
accacttcgtctagtcctaagactcgtgtttggggttgtgaaccgtcaatattatattaaaggttcaacatcctctcgtaagggccaattaaccctaggg |
43535376 |
T |
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| Q |
266 |
cgagctcttcccatatcgccgcttcaaatgacttctagaaacatctgaaacataaaaggcgtggctt-ggggcctaagttacttctgacataagtcacag |
364 |
Q |
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| T |
43535377 |
tgagctcttcccatatcgccgcttcaaatgacttctagaaacatctgaaacataaaaggcgtggcttgggggcctaagttacttctgactt------cag |
43535470 |
T |
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| Q |
365 |
aaatacaagctcaagaaaggctataaatatccaccatgagag |
406 |
Q |
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| T |
43535471 |
aaatacaagctcaagaaaggctataaatacccaccataagag |
43535512 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 212 - 311
Target Start/End: Original strand, 43933501 - 43933600
Alignment:
| Q |
212 |
caatattatattaaaggttcaacatcctctcgtaagggccaattaaccttagggcgagctcttcccatatcgccgcttcaaatgacttctagaaacatct |
311 |
Q |
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| T |
43933501 |
caatattatattaagggctcagcatcctctcgtaaagcccgattaaccctagggcgcgcccttccctcatcaccgcctgtaatgacttctagaagcatct |
43933600 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 314 - 393
Target Start/End: Complemental strand, 22244733 - 22244654
Alignment:
| Q |
314 |
aacataaaaggcgtggcttggggcctaagttacttctgacataagtcacagaaatacaagctcaagaaaggctataaata |
393 |
Q |
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| T |
22244733 |
aacataaaaggtgtgacttagggcctaagttacttagggcctaagtcacggaaatacaagcccaaaaaaagctataaata |
22244654 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 355 - 393
Target Start/End: Complemental strand, 37519149 - 37519111
Alignment:
| Q |
355 |
taagtcacagaaatacaagctcaagaaaggctataaata |
393 |
Q |
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| T |
37519149 |
taagtcacagaaatacaagcccatgaaaggctataaata |
37519111 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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