View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8806_low_8 (Length: 308)
Name: NF8806_low_8
Description: NF8806
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8806_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 224; Significance: 1e-123; HSPs: 8)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 14 - 285
Target Start/End: Original strand, 32263796 - 32264067
Alignment:
| Q |
14 |
agacaaagaaaatcaagatttgtgctcatctccagggacaaatacagttgtctcaggattgacagaagtcgagaacatcgacaaagaaaatcaagacttg |
113 |
Q |
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| T |
32263796 |
agacaaagaaaatcaagatttgtgctcatctccagggacaaatacggttgtctcaggattgacagaagtcgagaacatcgacaaagaaaatcaagacttg |
32263895 |
T |
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| Q |
114 |
tgttcatctccagggacaaatacggctgtctcaggattgacagaagttgagaacatcgacaaagaaaataaagactggtgctcatcgcctggggaaaata |
213 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| | ||||||||||| |
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| T |
32263896 |
tgttcatctccagggacaaatacggctgtctcaggattgacagaagttgagaacatcgacaaagaaaatcaagactggtgctcatctcttggggaaaata |
32263995 |
T |
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| Q |
214 |
cggttgtctcaggtttgacagaagttgataacatcgacaaagaaaatcaagagttgtgcttatctcctgggg |
285 |
Q |
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| T |
32263996 |
cggttgtctcgggattgacagaagttgataacatcgacaaagaaaatgaaaacgtgtgctcatctcttgggg |
32264067 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 15 - 292
Target Start/End: Original strand, 32263953 - 32264230
Alignment:
| Q |
15 |
gacaaagaaaatcaagatttgtgctcatctccagggacaaatacagttgtctcaggattgacagaagtcgagaacatcgacaaagaaaatcaagacttgt |
114 |
Q |
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| T |
32263953 |
gacaaagaaaatcaagactggtgctcatctcttggggaaaatacggttgtctcgggattgacagaagttgataacatcgacaaagaaaatgaaaacgtgt |
32264052 |
T |
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| Q |
115 |
gttcatctccagggacaaatacggctgtctcaggattgacagaagttgagaacatcgacaaagaaaataaagactggtgctcatcgcctggggaaaatac |
214 |
Q |
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| T |
32264053 |
gctcatctcttggggcgaatacggctgtctcaggattgacagaagttgagaagatcgacaaagaaaataaagactggtgctcatcgcctggggaaaatac |
32264152 |
T |
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| Q |
215 |
ggttgtctcaggtttgacagaagttgataacatcgacaaagaaaatcaagagttgtgcttatctcctggggaaaatac |
292 |
Q |
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| T |
32264153 |
ggttgtctcaggtttgacagaagttgaaaacatcgacaaagaaaatcaagagttgtgcttatctcctggggaaaatac |
32264230 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 14 - 292
Target Start/End: Original strand, 32263718 - 32263996
Alignment:
| Q |
14 |
agacaaagaaaatcaagatttgtgctcatctccagggacaaatacagttgtctcaggattgacagaagtcgagaacatcgacaaagaaaatcaagacttg |
113 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| ||||||||||||||||| ||| |
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| T |
32263718 |
agacaaagaaaatcaagatttgtgctcatctccagggacaaatacagttgtctcaggattgacagaagttgataacatagacaaagaaaatcaagatttg |
32263817 |
T |
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| Q |
114 |
tgttcatctccagggacaaatacggctgtctcaggattgacagaagttgagaacatcgacaaagaaaataaagactggtgctcatcgcctggggaaaata |
213 |
Q |
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|| |||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||| |||||| ||| ||||| || ||| ||||| |
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| T |
32263818 |
tgctcatctccagggacaaatacggttgtctcaggattgacagaagtcgagaacatcgacaaagaaaatcaagacttgtgttcatctccagggacaaata |
32263917 |
T |
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| Q |
214 |
cggttgtctcaggtttgacagaagttgataacatcgacaaagaaaatcaagagttgtgcttatctcctggggaaaatac |
292 |
Q |
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||| ||||||||| |||||||||||||| ||||||||||||||||||||||| | ||||| ||||| |||||||||||| |
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| T |
32263918 |
cggctgtctcaggattgacagaagttgagaacatcgacaaagaaaatcaagactggtgctcatctcttggggaaaatac |
32263996 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 15 - 292
Target Start/End: Original strand, 32263875 - 32264152
Alignment:
| Q |
15 |
gacaaagaaaatcaagatttgtgctcatctccagggacaaatacagttgtctcaggattgacagaagtcgagaacatcgacaaagaaaatcaagacttgt |
114 |
Q |
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||||||||||||||||| ||||| |||||||||||||||||||| | ||||||||||||||||||||| |||||||||||||||||||||||||||| || |
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| T |
32263875 |
gacaaagaaaatcaagacttgtgttcatctccagggacaaatacggctgtctcaggattgacagaagttgagaacatcgacaaagaaaatcaagactggt |
32263974 |
T |
|
| Q |
115 |
gttcatctccagggacaaatacggctgtctcaggattgacagaagttgagaacatcgacaaagaaaataaagactggtgctcatcgcctggggaaaatac |
214 |
Q |
| |
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| ||||||| ||| |||||||| |||||| ||||||||||||||||| |||||||||||||||||| || || ||||||||| | ||||| ||||| |
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| T |
32263975 |
gctcatctcttggggaaaatacggttgtctcgggattgacagaagttgataacatcgacaaagaaaatgaaaacgtgtgctcatctcttggggcgaatac |
32264074 |
T |
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| Q |
215 |
ggttgtctcaggtttgacagaagttgataacatcgacaaagaaaatcaagagttgtgcttatctcctggggaaaatac |
292 |
Q |
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|| ||||||||| |||||||||||||| || ||||||||||||||| |||| | ||||| ||| |||||||||||||| |
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| T |
32264075 |
ggctgtctcaggattgacagaagttgagaagatcgacaaagaaaataaagactggtgctcatcgcctggggaaaatac |
32264152 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 15 - 273
Target Start/End: Original strand, 32264031 - 32264289
Alignment:
| Q |
15 |
gacaaagaaaatcaagatttgtgctcatctccagggacaaatacagttgtctcaggattgacagaagtcgagaacatcgacaaagaaaatcaagacttgt |
114 |
Q |
| |
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|||||||||||| || | |||||||||||| ||| | ||||| | ||||||||||||||||||||| ||||| ||||||||||||||| |||||| || |
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| T |
32264031 |
gacaaagaaaatgaaaacgtgtgctcatctcttggggcgaatacggctgtctcaggattgacagaagttgagaagatcgacaaagaaaataaagactggt |
32264130 |
T |
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| Q |
115 |
gttcatctccagggacaaatacggctgtctcaggattgacagaagttgagaacatcgacaaagaaaataaagactggtgctcatcgcctggggaaaatac |
214 |
Q |
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| T |
32264131 |
gctcatcgcctggggaaaatacggttgtctcaggtttgacagaagttgaaaacatcgacaaagaaaatcaagagttgtgcttatctcctggggaaaatac |
32264230 |
T |
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| Q |
215 |
ggttgtctcaggtttgacagaagttgataacatcgacaaagaaaatcaagagttgtgct |
273 |
Q |
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| ||||||||| ||||||||||||||||||||||| |||||||||||||| ||||||| |
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| T |
32264231 |
agctgtctcaggattgacagaagttgataacatcgataaagaaaatcaagacttgtgct |
32264289 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 64 - 280
Target Start/End: Original strand, 32263690 - 32263906
Alignment:
| Q |
64 |
tctcaggattgacagaagtcgagaacatcgacaaagaaaatcaagacttgtgttcatctccagggacaaatacggctgtctcaggattgacagaagttga |
163 |
Q |
| |
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|||||| |||||||||||| || ||||| ||||||||||||||||| ||||| |||||||||||||||||||| | |||||||||||||||||||||||| |
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| T |
32263690 |
tctcagaattgacagaagttgataacatagacaaagaaaatcaagatttgtgctcatctccagggacaaatacagttgtctcaggattgacagaagttga |
32263789 |
T |
|
| Q |
164 |
gaacatcgacaaagaaaataaagactggtgctcatcgcctggggaaaatacggttgtctcaggtttgacagaagttgataacatcgacaaagaaaatcaa |
263 |
Q |
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||||| |||||||||||| |||| | ||||||||| || ||| |||||||||||||||||| ||||||||||| || ||||||||||||||||||||| |
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| T |
32263790 |
taacatagacaaagaaaatcaagatttgtgctcatctccagggacaaatacggttgtctcaggattgacagaagtcgagaacatcgacaaagaaaatcaa |
32263889 |
T |
|
| Q |
264 |
gagttgtgcttatctcc |
280 |
Q |
| |
|
|| ||||| | |||||| |
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| T |
32263890 |
gacttgtgttcatctcc |
32263906 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 15 - 198
Target Start/End: Original strand, 32264109 - 32264292
Alignment:
| Q |
15 |
gacaaagaaaatcaagatttgtgctcatctccagggacaaatacagttgtctcaggattgacagaagtcgagaacatcgacaaagaaaatcaagacttgt |
114 |
Q |
| |
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|||||||||||| |||| | ||||||||| || ||| |||||| ||||||||||| ||||||||||| || ||||||||||||||||||||||| |||| |
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| T |
32264109 |
gacaaagaaaataaagactggtgctcatcgcctggggaaaatacggttgtctcaggtttgacagaagttgaaaacatcgacaaagaaaatcaagagttgt |
32264208 |
T |
|
| Q |
115 |
gttcatctccagggacaaatacggctgtctcaggattgacagaagttgagaacatcgacaaagaaaataaagactggtgctcat |
198 |
Q |
| |
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| | |||||| ||| |||||| |||||||||||||||||||||||||| |||||||| ||||||||| |||||| |||||||| |
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| T |
32264209 |
gcttatctcctggggaaaatacagctgtctcaggattgacagaagttgataacatcgataaagaaaatcaagacttgtgctcat |
32264292 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 117 - 280
Target Start/End: Original strand, 32263665 - 32263828
Alignment:
| Q |
117 |
tcatctccagggacaaatacggctgtctcaggattgacagaagttgagaacatcgacaaagaaaataaagactggtgctcatcgcctggggaaaatacgg |
216 |
Q |
| |
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|||||||||||| ||||| ||| |||||| ||||||||||||||| ||||| |||||||||||| |||| | ||||||||| || ||| |||||| | |
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| T |
32263665 |
tcatctccaggggaaaatatggcaatctcagaattgacagaagttgataacatagacaaagaaaatcaagatttgtgctcatctccagggacaaatacag |
32263764 |
T |
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| Q |
217 |
ttgtctcaggtttgacagaagttgataacatcgacaaagaaaatcaagagttgtgcttatctcc |
280 |
Q |
| |
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|||||||||| |||||||||||||||||||| ||||||||||||||||| ||||||| |||||| |
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| T |
32263765 |
ttgtctcaggattgacagaagttgataacatagacaaagaaaatcaagatttgtgctcatctcc |
32263828 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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