View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8806_low_9 (Length: 307)
Name: NF8806_low_9
Description: NF8806
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8806_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 18 - 304
Target Start/End: Original strand, 12508020 - 12508306
Alignment:
| Q |
18 |
ggaggcacaagaacagaagaagataccttaaacctcttactacttgaaccttcacaaatatcagaactatcatcatcaatccaccccatgagttgttcca |
117 |
Q |
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| T |
12508020 |
ggaggcacaagaacagaagaagataccttaaacctcttactacttgaaccttcacaaatatcagaactatcatcatcaatccaccccatgagttgttcca |
12508119 |
T |
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| Q |
118 |
aaaaaccttgatcaccaacattaatattagcattattattaatctctcctatatcagatccatcagaatctaaccctagattctgaaatccaaaccattc |
217 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12508120 |
aaaaaccttgatcaccaacattaatattagcattattgttaatctctcctatatcagatccatcagaatctaaccctagattctgaaatccaaaccattc |
12508219 |
T |
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| Q |
218 |
agagctacaatcagaaaccctagaagggtcaccatcattagagggaacaatgatactaggctgcacaactttctcaatgttcttcat |
304 |
Q |
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| T |
12508220 |
agagctacaatcagaaaccctagaagggtcaccatcattagagggaacaatgatactaggctgcacaactttctctatgttcttcat |
12508306 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 161; Significance: 7e-86; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 161; E-Value: 7e-86
Query Start/End: Original strand, 18 - 243
Target Start/End: Original strand, 21279384 - 21279607
Alignment:
| Q |
18 |
ggaggcacaagaacagaagaagataccttaaacctcttactacttgaaccttcacaaatatcagaactatcatcatcaatccaccccatgagttgttcca |
117 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||| |
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| T |
21279384 |
ggaggcacaagaacagaagaagataccttaaaccttttactacttgaaccttcacaaatatcagaactatcatca---atccatcccatgagttgttcca |
21279480 |
T |
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| Q |
118 |
aaa-aaccttgatcaccaacattaatattagcattattattaatctctcctatatcagatccatcagaatctaaccctagattctgaaatccaaaccatt |
216 |
Q |
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||| |||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| ||||||||||| ||| ||| |||||||||||| |
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| T |
21279481 |
aaaaaaccttgatcaccaacattaatattagcattaatattaatctctcctatatcacatccatcataatctaaccctttattatgatatccaaaccatt |
21279580 |
T |
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| Q |
217 |
cagagctacaatcagaaaccctagaag |
243 |
Q |
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|||| |||||||||||||| ||||||| |
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| T |
21279581 |
cagaactacaatcagaaacactagaag |
21279607 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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