View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8807_low_1 (Length: 498)
Name: NF8807_low_1
Description: NF8807
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8807_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 426; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 426; E-Value: 0
Query Start/End: Original strand, 1 - 480
Target Start/End: Complemental strand, 40697957 - 40697479
Alignment:
| Q |
1 |
cttccatcaatttccttaaagccggtggagggtttggtccgattcgagttaacaaccgagcagtgataagtgttccttttccaaaaccggaagcggagtt |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| |
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| T |
40697957 |
cttccatcaatttccttaaagccggtggagggtttggtccgattcgagttaacaatcgcgcagtgataagtgttccttttccaaaaccggaagcggagtt |
40697858 |
T |
|
| Q |
101 |
tgatcttttaattggtgactggtacaataggagctacatggtagtttagttcaatgctttcttatcatacaagttatttgttttggatttgctaattctg |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40697857 |
tgatcttttaattggtgactggtacaataggagctacatggtagtttagtttaatgctttcttatcatacaagttatttgttttggatttgctaattctg |
40697758 |
T |
|
| Q |
201 |
nnnnnnnatataatttcaactaggatgttagggacaggttggacactatggatattgtttccccaagttggatgttaataaacggaaaaggtccatatat |
300 |
Q |
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| T |
40697757 |
tttttt-atataatttgaactaggatgttagggacaggttggacactatggatattgtttccccaagttggatgttaataaacggaaaaggtccatatat |
40697659 |
T |
|
| Q |
301 |
aaacaatttttcaaaaacatatgagaccttcaatgttacacaaggtaagaagaagtgaataaaagtgttactgacttcaactttttatgaaaatttcatt |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40697658 |
gaacaatttttcaaaaacatatgagaccttcaatgttacacaaggtaagaagaagtgaataaaagtgttactgacttcaactttttatgaaaatttcatt |
40697559 |
T |
|
| Q |
401 |
tcatggattaaaataactaactccttttatgataatgtgtcaaaaggacaaacatatttgcttaggatatcaaatgtagg |
480 |
Q |
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||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40697558 |
tcatggattaatataactaactccttttatgataatatgtcaaaaggacaaacatatttgcttaggatatcaaatgtagg |
40697479 |
T |
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